Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0011823

Physical Location & Seq

Genomic Coordinates Reverse (-)

4791788 .. 4793096

Gene Structure 1309 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g07330.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGGTGGATTTGAGGATCTCAGCAGAAACCCCCACACTCCGTGACGCAGACAGAAAACTTTCACCTCGCCATTTCTCTCCACCATTTGTCCACTGTATAAAACTTCAGCCACAGAAAGCAGAGCAACCCTTGTTTTTAACTTCTCCGATTCCAATCCGGAAGATGGCGAGGAACGGTGTCGCTTCGTGGCGGAGGAAGTCGGAGAAGCTCGATCTCTCGCCGCCGTTGGTTTCGGAGGAAGCTCACGTTCTCGCCGTCGACGACAGCCTCGTCGATCGCAAGGTCATCGAGCGATTGCTCAAAATTTCCTCCTGCAAAGTGACGACTGTTGACAGCGGAAGAAGAGCTCTGCAGTTCCTCGGCCTGGACGAGGAGAAGAGCTCCACCGCCGGATTCGACGGCTTGAAGGTGGACCTGATCATAACGGATTACTGTATGCCTGGGATGACCGGCTACGAATTGCTCAAGAAAATCAAAGAATCTTCCACATTCAAAGCAACTCCCGTCGTGATTATGTCATCCGAGAACGTTTTGGCGCGCATAGACCGGTGTTTGGAAGAAGGTGCGGAGGACTTCATAGTTAAACCGGTGAAGTTGGCTGACGTCAAGAGGCTGAAGGATTACATGACGACGGCGAGGGATGTCGGAGTGGAAGAGAGCGGTGGAGGAATGAACAAGAGAAAGCTACGCGAGCCGTGTGATCCGACGATGCCTTCATCACCGCCGTCCCTTTTTCCGTCGTCGCCGTCGTCGTCCTCATCGTCTCCGTCTAAATCCCCGTCGCCTCCTTTGTCATCGTCGTTCTCGGCTCCGGCGTCGCCCTCGTCGCCCTCGTCGCTTGGTTCTCCGATCCGACGGTTGAAAATGACCAACGCTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000156 GO:0000160 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0007623 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009987 GO:0010017 GO:0010033 GO:0010114 GO:0010154 GO:0010161 GO:0010468 GO:0010556 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019219 GO:0019222 GO:0019538 GO:0022414 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0048316 GO:0048511 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071214 GO:0071310 GO:0071368 GO:0071478 GO:0071482 GO:0071489 GO:0071491 GO:0071495 GO:0071704 GO:0080090 GO:0104004 GO:0140096 GO:1901564 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Response_reg

Protein Analysis

294

Amino Acids

32.01

Weight (kDa)

9.13

Isoelectric Point (pI)

76.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011823)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G59940 AT1G59940
fragaria_vesca	FvH4_4g35230
malus_domestica	MD13G1085200.v1.1 MD16G1084400.v1.1
prunus_persica	Prupe.1G261500_v2.0.a1
pyrus_communis	pycom13g07370 pycom16g07330
rosa_chinensis	RchiOBHm_Chr4g0444831
rosa_laevigata	RLG00000005797
rosa_multiflora	Rmu_sc0000096.1_g000023
rosa_roxburghii	Rroxscaffold_5G00385320
rosa_rugosa	Rorug04G0355400 Rorug04G0355500
rosa_samantha	Rh4AG416800 Rh4BG428700 Rh4CG443400 Rh4DG424500
rosa_wichuraiana	Rw4G035730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	269
AatII	GACGTC	1 cut(s)	606
AccBSI	CCGCTC	1 cut(s)	660
AccI	GTMKAC	1 cut(s)	258
AccII	CGCG	2 cut(s)	538, 690
AccIII	TCCGGA	1 cut(s)	156
AciI	CCGC	7 cut(s)	190, 221, 336, 387, 566, 660, 722
AclI	AACGTT	1 cut(s)	528
AclWI	GGATC	3 cut(s)	23, 695, 844
AcsI	RAATTY	1 cut(s)	303
AcuI	CTGAAG	2 cut(s)	89, 635
AcyI	GRCGYC	2 cut(s)	603, 815
AdeI	CACNNNGTG	1 cut(s)	41
AfiI	CCNNNNNNNGG	4 cut(s)	163, 364, 370, 553
AgeI	ACCGGT	2 cut(s)	546, 586
AgsI	TTSAA	3 cut(s)	406, 493, 862
AjnI	CCWGG	2 cut(s)	363, 439
AluBI	AGCT	5 cut(s)	208, 242, 347, 381, 685
AluI	AGCT	5 cut(s)	208, 242, 347, 381, 685
Alw21I	GWGCWC	2 cut(s)	349, 383
Alw26I	GTCTC	1 cut(s)	768
AlwI	GGATC	3 cut(s)	23, 695, 844
Aor13HI	TCCGGA	1 cut(s)	156
AoxI	GGCC	1 cut(s)	361
ApoI	RAATTY	1 cut(s)	303
AsiGI	ACCGGT	2 cut(s)	546, 586
Asp700I	GAANNNNTTC	1 cut(s)	58
AspLEI	GCGC	2 cut(s)	538, 540
AspS9I	GGNCC	1 cut(s)	412
AsuHPI	GGTGA	3 cut(s)	54, 601, 711
AvaII	GGWCC	1 cut(s)	412
BanII	GRGCYC	2 cut(s)	349, 383
Bbv12I	GWGCWC	2 cut(s)	349, 383
BccI	CCATC	1 cut(s)	157
BceAI	ACGGC	7 cut(s)	208, 239, 415, 648, 679, 709, 730
BcgI	CGANNNNNNTGC	2 cut(s)	268, 302
BciT130I	CCWGG	2 cut(s)	365, 441
BclI	TGATCA	1 cut(s)	417
BcoDI	GTCTC	1 cut(s)	768
BfmI	CTRYAG	1 cut(s)	350
BisI	GCNGC	1 cut(s)	221
BlsI	GCNGC	1 cut(s)	222
Bme1390I	CCNGG	2 cut(s)	365, 441
Bme18I	GGWCC	1 cut(s)	412
BmgT120I	GGNCC	1 cut(s)	412
BmiI	GGNNCC	1 cut(s)	810
BmrFI	CCNGG	2 cut(s)	365, 441
BmsI	GCATC	1 cut(s)	699
BplI	GAGNNNNNCTC	2 cut(s)	365, 397
BpuEI	CTTGAG	1 cut(s)	449
BsaBI	GATNNNNATC	1 cut(s)	152
BsaHI	GRCGYC	2 cut(s)	603, 815
BsaJI	CCNNGG	2 cut(s)	358, 440
BsaWI	WCCGGW	3 cut(s)	156, 546, 586
Bsc4I	CCNNNNNNNGG	4 cut(s)	163, 364, 370, 553
Bse118I	RCCGGY	3 cut(s)	449, 546, 586
Bse8I	GATNNNNATC	1 cut(s)	152
BseAI	TCCGGA	1 cut(s)	156
BseBI	CCWGG	2 cut(s)	365, 441
BseDI	CCNNGG	2 cut(s)	358, 440
BseGI	GGATG	3 cut(s)	450, 518, 646
BseJI	GATNNNNATC	1 cut(s)	152
BseLI	CCNNNNNNNGG	4 cut(s)	163, 364, 370, 553
BseMII	CTCAG	1 cut(s)	33
BsePI	GCGCGC	1 cut(s)	536
BseRI	GAGGAG	1 cut(s)	386
Bsh1236I	CGCG	2 cut(s)	538, 690
Bsh1285I	CGRYCG	1 cut(s)	277
BshFI	GGCC	1 cut(s)	363
BshTI	ACCGGT	2 cut(s)	546, 586
BsiEI	CGRYCG	1 cut(s)	277
BsiHKAI	GWGCWC	2 cut(s)	349, 383
BsiSI	CCGG	6 cut(s)	157, 390, 450, 547, 587, 812
BslFI	GGGAC	1 cut(s)	712
BslI	CCNNNNNNNGG	4 cut(s)	163, 364, 370, 553
BsmAI	GTCTC	1 cut(s)	768
BsmBI	CGTCTC	1 cut(s)	768
BsmFI	GGGAC	1 cut(s)	712
BsnI	GGCC	1 cut(s)	363
Bsp1286I	GDGCHC	2 cut(s)	349, 383
Bsp13I	TCCGGA	1 cut(s)	156
Bsp143I	GATC	6 cut(s)	15, 211, 274, 417, 700, 849
BspACI	CCGC	7 cut(s)	190, 221, 336, 387, 566, 660, 722
BspANI	GGCC	1 cut(s)	363
BspCNI	CTCAG	1 cut(s)	32
BspEI	TCCGGA	1 cut(s)	156
BspFNI	CGCG	2 cut(s)	538, 690
BspLI	GGNNCC	1 cut(s)	810
BspMAI	CTGCAG	1 cut(s)	354
BspPI	GGATC	3 cut(s)	23, 695, 844
BspQI	GCTCTTC	2 cut(s)	337, 371
BsrBI	CCGCTC	1 cut(s)	660
BsrFI	RCCGGY	3 cut(s)	449, 546, 586
BssAI	RCCGGY	3 cut(s)	449, 546, 586
BssECI	CCNNGG	2 cut(s)	358, 440
BssHII	GCGCGC	1 cut(s)	536
BssMI	GATC	6 cut(s)	15, 211, 274, 417, 700, 849
BssNI	GRCGYC	2 cut(s)	603, 815
Bst2UI	CCWGG	2 cut(s)	365, 441
Bst4CI	ACNGT	5 cut(s)	95, 176, 328, 434, 858
Bst6I	CTCTTC	3 cut(s)	337, 371, 648
BstACI	GRCGYC	2 cut(s)	603, 815
BstC8I	GCNNGC	2 cut(s)	538, 692
BstDEI	CTNAG	1 cut(s)	19
BstENI	CCTNNNNNAGG	1 cut(s)	368
BstF5I	GGATG	3 cut(s)	450, 518, 646
BstFNI	CGCG	2 cut(s)	538, 690
BstHHI	GCGC	2 cut(s)	538, 540
BstKTI	GATC	6 cut(s)	18, 214, 277, 420, 703, 852
BstMAI	GTCTC	1 cut(s)	768
BstMBI	GATC	6 cut(s)	15, 211, 274, 417, 700, 849
BstMCI	CGRYCG	1 cut(s)	277
BstMWI	GCNNNNNNNGC	3 cut(s)	691, 826, 835
BstNI	CCWGG	2 cut(s)	365, 441
BstSCI	CCNGG	2 cut(s)	363, 439
BstSFI	CTRYAG	1 cut(s)	350
BstUI	CGCG	2 cut(s)	538, 690
BstX2I	RGATCY	1 cut(s)	15
BstYI	RGATCY	1 cut(s)	15
BsuRI	GGCC	1 cut(s)	363
BtsCI	GGATG	3 cut(s)	450, 518, 646
BtsIMutI	CAGTG	1 cut(s)	91
Cac8I	GCNNGC	2 cut(s)	538, 692
CfoI	GCGC	2 cut(s)	538, 540
Cfr10I	RCCGGY	3 cut(s)	449, 546, 586
Cfr13I	GGNCC	1 cut(s)	412
CseI	GACGC	2 cut(s)	53, 804
CspAI	ACCGGT	2 cut(s)	546, 586
CviAII	CATG	1 cut(s)	625
DdeI	CTNAG	1 cut(s)	19
DpnI	GATC	6 cut(s)	17, 213, 276, 419, 702, 851
DpnII	GATC	6 cut(s)	15, 211, 274, 417, 700, 849
DraIII	CACNNNGTG	1 cut(s)	41
DrdI	GACNNNNNNGTC	1 cut(s)	269
DseDI	GACNNNNNNGTC	1 cut(s)	269
Eam1104I	CTCTTC	3 cut(s)	337, 371, 648
EarI	CTCTTC	3 cut(s)	337, 371, 648
EciI	GGCGGA	1 cut(s)	205
Ecl136II	GAGCTC	2 cut(s)	347, 381
Eco24I	GRGCYC	2 cut(s)	349, 383
Eco47I	GGWCC	1 cut(s)	412
Eco53kI	GAGCTC	2 cut(s)	347, 381
Eco57I	CTGAAG	2 cut(s)	89, 635
EcoICRI	GAGCTC	2 cut(s)	347, 381
EcoNI	CCTNNNNNAGG	1 cut(s)	368
EcoRII	CCWGG	2 cut(s)	363, 439
EcoT38I	GRGCYC	2 cut(s)	349, 383
Esp3I	CGTCTC	1 cut(s)	768
FaeI	CATG	1 cut(s)	628
FaiI	YATR	7 cut(s)	98, 422, 437, 515, 542, 578, 626
FaqI	GGGAC	1 cut(s)	712
FatI	CATG	1 cut(s)	624
FbaI	TGATCA	1 cut(s)	417
FblI	GTMKAC	1 cut(s)	258
Fnu4HI	GCNGC	1 cut(s)	221
FokI	GGATG	3 cut(s)	457, 505, 653
FriOI	GRGCYC	2 cut(s)	349, 383
Fsp4HI	GCNGC	1 cut(s)	221
GlaI	GCGC	2 cut(s)	537, 539
GluI	GCNGC	1 cut(s)	221
HaeIII	GGCC	1 cut(s)	363
HapII	CCGG	6 cut(s)	157, 390, 450, 547, 587, 812
HgaI	GACGC	2 cut(s)	53, 804
HhaI	GCGC	2 cut(s)	538, 540
Hin1I	GRCGYC	2 cut(s)	603, 815
Hin1II	CATG	1 cut(s)	628
Hin6I	GCGC	2 cut(s)	536, 538
HinP1I	GCGC	2 cut(s)	536, 538
HincII	GTYRAC	2 cut(s)	259, 331
HindII	GTYRAC	2 cut(s)	259, 331
HinfI	GANTC	3 cut(s)	148, 393, 479
HpaII	CCGG	6 cut(s)	157, 390, 450, 547, 587, 812
HphI	GGTGA	3 cut(s)	54, 601, 711
Hpy166II	GTNNAC	4 cut(s)	91, 259, 331, 412
Hpy188I	TCNGA	8 cut(s)	147, 202, 235, 523, 647, 705, 849, 854
Hpy188III	TCNNGA	4 cut(s)	157, 466, 508, 607
Hpy8I	GTNNAC	4 cut(s)	91, 259, 331, 412
HpyAV	CCTTC	4 cut(s)	400, 554, 610, 723
HpyCH4III	ACNGT	5 cut(s)	95, 176, 328, 434, 858
HpyCH4IV	ACGT	3 cut(s)	246, 528, 603
HpyCH4V	TGCA	2 cut(s)	315, 352
HpyF10VI	GCNNNNNNNGC	3 cut(s)	691, 826, 835
HpyF3I	CTNAG	1 cut(s)	19
HpySE526I	ACGT	3 cut(s)	246, 528, 603
Hsp92I	GRCGYC	2 cut(s)	603, 815
Hsp92II	CATG	1 cut(s)	628
HspAI	GCGC	2 cut(s)	536, 538
Kpn2I	TCCGGA	1 cut(s)	156
Ksp22I	TGATCA	1 cut(s)	417
Kzo9I	GATC	6 cut(s)	15, 211, 274, 417, 700, 849
LguI	GCTCTTC	2 cut(s)	337, 371
LmnI	GCTCC	2 cut(s)	386, 814
LweI	GCATC	1 cut(s)	699
MaeII	ACGT	3 cut(s)	246, 528, 603
MaeIII	GTNAC	2 cut(s)	41, 319
MalI	GATC	6 cut(s)	17, 213, 276, 419, 702, 851
MbiI	CCGCTC	1 cut(s)	660
MboI	GATC	6 cut(s)	15, 211, 274, 417, 700, 849
MboII	GAAGA	7 cut(s)	172, 351, 354, 388, 474, 569, 665
MflI	RGATCY	1 cut(s)	15
MhlI	GDGCHC	2 cut(s)	349, 383
MluCI	AATT	2 cut(s)	303, 458
MmeI	TCCRAC	4 cut(s)	180, 625, 728, 877
MroI	TCCGGA	1 cut(s)	156
MroXI	GAANNNNTTC	1 cut(s)	58
MseI	TTAA	2 cut(s)	137, 582
MspA1I	CMGCKG	1 cut(s)	336
MspI	CCGG	6 cut(s)	157, 390, 450, 547, 587, 812
MspR9I	CCNGG	2 cut(s)	365, 441
MvaI	CCWGG	2 cut(s)	365, 441
MvnI	CGCG	2 cut(s)	538, 690
MwoI	GCNNNNNNNGC	3 cut(s)	691, 826, 835
NdeII	GATC	6 cut(s)	15, 211, 274, 417, 700, 849
NlaIII	CATG	1 cut(s)	628
NlaIV	GGNNCC	1 cut(s)	810
NmeAIII	GCCGAG	2 cut(s)	339, 785
NmuCI	GTSAC	2 cut(s)	41, 319
PauI	GCGCGC	1 cut(s)	536
PciSI	GCTCTTC	2 cut(s)	337, 371
PcsI	WCGNNNNNNNCGW	9 cut(s)	252, 258, 267, 366, 746, 749, 758, 812, 830
PdmI	GAANNNNTTC	1 cut(s)	58
PfeI	GAWTC	3 cut(s)	148, 393, 479
PinAI	ACCGGT	2 cut(s)	546, 586
PkrI	GCNGC	1 cut(s)	222
Ple19I	CGATCG	1 cut(s)	277
Psp124BI	GAGCTC	2 cut(s)	349, 383
Psp1406I	AACGTT	1 cut(s)	528
Psp6I	CCWGG	2 cut(s)	363, 439
PspGI	CCWGG	2 cut(s)	363, 439
PspN4I	GGNNCC	1 cut(s)	810
PspPI	GGNCC	1 cut(s)	412
PstI	CTGCAG	1 cut(s)	354
PsuI	RGATCY	1 cut(s)	15
PteI	GCGCGC	1 cut(s)	536
PvuI	CGATCG	1 cut(s)	277
SacI	GAGCTC	2 cut(s)	349, 383
SalI	GTCGAC	1 cut(s)	257
SapI	GCTCTTC	2 cut(s)	337, 371
SaqAI	TTAA	2 cut(s)	137, 582
SatI	GCNGC	1 cut(s)	221
Sau3AI	GATC	6 cut(s)	15, 211, 274, 417, 700, 849
Sau96I	GGNCC	1 cut(s)	412
ScrFI	CCNGG	2 cut(s)	365, 441
SduI	GDGCHC	2 cut(s)	349, 383
SfaNI	GCATC	1 cut(s)	699
SfcI	CTRYAG	1 cut(s)	350
SgrDI	CGTCGACG	1 cut(s)	257
SinI	GGWCC	1 cut(s)	412
SmlI	CTYRAG	1 cut(s)	464
SmoI	CTYRAG	1 cut(s)	464
Sse9I	AATT	2 cut(s)	303, 458
SsiI	CCGC	7 cut(s)	190, 221, 336, 387, 566, 660, 722
SstI	GAGCTC	2 cut(s)	349, 383
StyD4I	CCNGG	2 cut(s)	363, 439
TaaI	ACNGT	5 cut(s)	95, 176, 328, 434, 858
TaiI	ACGT	3 cut(s)	249, 531, 606
TaqI	TCGA	5 cut(s)	210, 258, 273, 288, 396
TasI	AATT	2 cut(s)	303, 458
TauI	GCSGC	1 cut(s)	223
TfiI	GAWTC	3 cut(s)	148, 393, 479
Tru1I	TTAA	2 cut(s)	137, 582
Tru9I	TTAA	2 cut(s)	137, 582
TscAI	CASTG	1 cut(s)	98
TseFI	GTSAC	2 cut(s)	41, 319
Tsp45I	GTSAC	2 cut(s)	41, 319
TspDTI	ATGAA	3 cut(s)	565, 686, 705
TspGWI	ACGGA	4 cut(s)	29, 440, 726, 756
TspRI	CASTG	1 cut(s)	98
VpaK11BI	GGWCC	1 cut(s)	412
XagI	CCTNNNNNAGG	1 cut(s)	368
XapI	RAATTY	1 cut(s)	303
XmiI	GTMKAC	1 cut(s)	258
XmnI	GAANNNNTTC	1 cut(s)	58
ZraI	GACGTC	1 cut(s)	604

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.