Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0011823

Physical Location & Seq

Genomic Coordinates Reverse (-)

52756159 .. 52759114

Gene Structure 2956 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0355400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGCAGATTTTACCGAAGAACTCGAACCCCTTTTCGATTACAGCCGTGTGCAGCCTCTCAATGTCATCTCCCTCGACGACGACGACGACGACGAGGCGTCGGCTTCTCCTCCGAGCAAGAAGAGGAAGAAGGCTTCGAATCCAGCAGTTGAAAAGGTTGATGACAGTGTGAAGGTTACAGTTATTGAGGAAGACGACGAGGACTGGTTGCTTCCTCCGCCCAAACTTACCAAGAAATTGGGTGATGATTCCATCTTAAAGGCGTTGAGGTTACAGAAGCAAGAGCTGGCATCAGCTGAGTCGGCTGAAAATGTGGTCCGAGCTGTGGAGGAGTCTGTGAGACGAGAACTTCTTAGTTCCCTCCAATCTTCACCAGATGCTACGGCAGCGCCACCTCCAAATCCCCAAGTTGAAAGAAACAAAGTAGTTATATCTATTCAAGACAAGGATGGAGTCAAGCAATTTCGCATATACATGGATGACAAGTTTGAGCGGCTATTCAAAATGTATGCAGATAAAGCTAAGATTGACATTCAGAGTTTGGTTTTTAGTTTTGATGGAGATAAAATAGGTCCAGATGCCACACCTGAATCACTCCGGATGGAGGATGATGACATGATCGAAGTGCATGATACTTCAAACAAAAAAGGTGTTTCTTCAACCAAGGCAACTCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000156 GO:0000160 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0007623 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009987 GO:0010017 GO:0010033 GO:0010114 GO:0010154 GO:0010161 GO:0010468 GO:0010556 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019219 GO:0019222 GO:0019538 GO:0022414 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0048316 GO:0048511 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071214 GO:0071310 GO:0071368 GO:0071478 GO:0071482 GO:0071489 GO:0071491 GO:0071495 GO:0071704 GO:0080090 GO:0104004 GO:0140096 GO:1901564 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Response_reg

Protein Analysis

225

Amino Acids

25.18

Weight (kDa)

4.61

Isoelectric Point (pI)

61.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rad60-SLD	PF11976	142 - 209	1.3e-13	Ubiquitin-2 like Rad60 SUMO-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011823)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G59940 AT1G59940
fragaria_vesca	FvH4_4g35230
malus_domestica	MD13G1085200.v1.1 MD16G1084400.v1.1
prunus_persica	Prupe.1G261500_v2.0.a1
pyrus_communis	pycom13g07370 pycom16g07330
rosa_chinensis	RchiOBHm_Chr4g0444831
rosa_laevigata	RLG00000005797
rosa_multiflora	Rmu_sc0000096.1_g000023
rosa_roxburghii	Rroxscaffold_5G00385320
rosa_rugosa	Rorug04G0355400 Rorug04G0355500
rosa_samantha	Rh4AG416800 Rh4BG428700 Rh4CG443400 Rh4DG424500
rosa_wichuraiana	Rw4G035730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	493
AccIII	TCCGGA	1 cut(s)	597
AciI	CCGC	2 cut(s)	218, 493
AcyI	GRCGYC	1 cut(s)	98
AfiI	CCNNNNNNNGG	2 cut(s)	325, 604
AgsI	TTSAA	6 cut(s)	152, 413, 440, 502, 639, 660
AhdI	GACNNNNNGTC	1 cut(s)	97
AluBI	AGCT	4 cut(s)	286, 296, 323, 521
AluI	AGCT	4 cut(s)	286, 296, 323, 521
Alw26I	GTCTC	1 cut(s)	334
Aor13HI	TCCGGA	1 cut(s)	597
ApeKI	GCWGC	2 cut(s)	52, 386
AspLEI	GCGC	1 cut(s)	391
AspS9I	GGNCC	2 cut(s)	316, 572
AsuHPI	GGTGA	2 cut(s)	254, 363
AsuII	TTCGAA	1 cut(s)	137
AvaII	GGWCC	2 cut(s)	316, 572
BbsI	GAAGAC	1 cut(s)	198
BbvI	GCAGC	2 cut(s)	64, 398
BccI	CCATC	4 cut(s)	260, 443, 551, 595
BceAI	ACGGC	2 cut(s)	30, 399
BcoDI	GTCTC	1 cut(s)	334
BfoI	RGCGCY	1 cut(s)	392
BisI	GCNGC	3 cut(s)	53, 387, 494
BlsI	GCNGC	3 cut(s)	54, 388, 495
Bme18I	GGWCC	2 cut(s)	316, 572
BmeRI	GACNNNNNGTC	1 cut(s)	97
BmgT120I	GGNCC	2 cut(s)	316, 572
BmsI	GCATC	3 cut(s)	299, 367, 568
BpiI	GAAGAC	1 cut(s)	198
Bpu14I	TTCGAA	1 cut(s)	137
BsaHI	GRCGYC	1 cut(s)	98
BsaJI	CCNNGG	1 cut(s)	663
BsaWI	WCCGGW	1 cut(s)	597
Bsc4I	CCNNNNNNNGG	2 cut(s)	325, 604
Bse1I	ACTGG	1 cut(s)	209
BseAI	TCCGGA	1 cut(s)	597
BseDI	CCNNGG	1 cut(s)	663
BseGI	GGATG	4 cut(s)	454, 484, 606, 613
BseLI	CCNNNNNNNGG	2 cut(s)	325, 604
BseMII	CTCAG	1 cut(s)	288
BseNI	ACTGG	1 cut(s)	209
BseRI	GAGGAG	2 cut(s)	99, 344
BseXI	GCAGC	2 cut(s)	64, 398
BsgI	GTGCAG	1 cut(s)	71
BsiSI	CCGG	1 cut(s)	598
BslI	CCNNNNNNNGG	2 cut(s)	325, 604
BsmAI	GTCTC	1 cut(s)	334
BsmBI	CGTCTC	1 cut(s)	334
Bsp119I	TTCGAA	1 cut(s)	137
Bsp13I	TCCGGA	1 cut(s)	597
Bsp143I	GATC	1 cut(s)	618
BspACI	CCGC	2 cut(s)	218, 493
BspCNI	CTCAG	1 cut(s)	289
BspEI	TCCGGA	1 cut(s)	597
BspT104I	TTCGAA	1 cut(s)	137
BsrBI	CCGCTC	1 cut(s)	493
BsrI	ACTGG	1 cut(s)	209
BssECI	CCNNGG	1 cut(s)	663
BssMI	GATC	1 cut(s)	618
BssNI	GRCGYC	1 cut(s)	98
BssT1I	CCWWGG	1 cut(s)	663
Bst4CI	ACNGT	2 cut(s)	167, 181
Bst6I	CTCTTC	1 cut(s)	116
BstACI	GRCGYC	1 cut(s)	98
BstBI	TTCGAA	1 cut(s)	137
BstC8I	GCNNGC	1 cut(s)	288
BstDEI	CTNAG	3 cut(s)	297, 353, 522
BstF5I	GGATG	4 cut(s)	454, 484, 606, 613
BstH2I	RGCGCY	1 cut(s)	392
BstHHI	GCGC	1 cut(s)	391
BstKTI	GATC	1 cut(s)	621
BstMAI	GTCTC	1 cut(s)	334
BstMBI	GATC	1 cut(s)	618
BstMWI	GCNNNNNNNGC	4 cut(s)	217, 302, 386, 518
BstV1I	GCAGC	2 cut(s)	64, 398
BstV2I	GAAGAC	1 cut(s)	198
BstXI	CCANNNNNNTGG	1 cut(s)	238
BtsCI	GGATG	4 cut(s)	454, 484, 606, 613
BtsIMutI	CAGTG	1 cut(s)	172
Cac8I	GCNNGC	1 cut(s)	288
CfoI	GCGC	1 cut(s)	391
Cfr13I	GGNCC	2 cut(s)	316, 572
CseI	GACGC	1 cut(s)	87
CviAII	CATG	3 cut(s)	475, 616, 629
DdeI	CTNAG	3 cut(s)	297, 353, 522
DpnI	GATC	1 cut(s)	620
DpnII	GATC	1 cut(s)	618
DriI	GACNNNNNGTC	1 cut(s)	97
Eam1104I	CTCTTC	1 cut(s)	116
Eam1105I	GACNNNNNGTC	1 cut(s)	97
EarI	CTCTTC	1 cut(s)	116
EciI	GGCGGA	1 cut(s)	207
Eco130I	CCWWGG	1 cut(s)	663
Eco47I	GGWCC	2 cut(s)	316, 572
EcoT14I	CCWWGG	1 cut(s)	663
ErhI	CCWWGG	1 cut(s)	663
Esp3I	CGTCTC	1 cut(s)	334
FaeI	CATG	3 cut(s)	478, 619, 632
FaiI	YATR	7 cut(s)	431, 470, 472, 476, 510, 617, 630
FatI	CATG	3 cut(s)	474, 615, 628
Fnu4HI	GCNGC	3 cut(s)	53, 387, 494
FokI	GGATG	4 cut(s)	461, 491, 613, 620
Fsp4HI	GCNGC	3 cut(s)	53, 387, 494
GlaI	GCGC	1 cut(s)	390
GluI	GCNGC	3 cut(s)	53, 387, 494
HaeII	RGCGCY	1 cut(s)	392
HapII	CCGG	1 cut(s)	598
HgaI	GACGC	1 cut(s)	87
HhaI	GCGC	1 cut(s)	391
Hin1I	GRCGYC	1 cut(s)	98
Hin1II	CATG	3 cut(s)	478, 619, 632
Hin6I	GCGC	1 cut(s)	389
HinP1I	GCGC	1 cut(s)	389
HinfI	GANTC	6 cut(s)	139, 248, 299, 332, 453, 590
HpaII	CCGG	1 cut(s)	598
HphI	GGTGA	2 cut(s)	254, 363
Hpy188I	TCNGA	3 cut(s)	114, 320, 537
Hpy188III	TCNNGA	3 cut(s)	440, 575, 598
Hpy99I	CGWCG	8 cut(s)	80, 83, 86, 89, 92, 95, 103, 200
HpyAV	CCTTC	2 cut(s)	124, 166
HpyCH4III	ACNGT	2 cut(s)	167, 181
HpyCH4V	TGCA	3 cut(s)	52, 512, 628
HpyF10VI	GCNNNNNNNGC	4 cut(s)	217, 302, 386, 518
HpyF3I	CTNAG	3 cut(s)	297, 353, 522
Hsp92I	GRCGYC	1 cut(s)	98
Hsp92II	CATG	3 cut(s)	478, 619, 632
HspAI	GCGC	1 cut(s)	389
Kpn2I	TCCGGA	1 cut(s)	597
Kzo9I	GATC	1 cut(s)	618
LpnPI	CCDG	7 cut(s)	156, 190, 272, 387, 588, 600, 611
Lsp1109I	GCAGC	2 cut(s)	64, 398
LweI	GCATC	3 cut(s)	299, 367, 568
MaeIII	GTNAC	2 cut(s)	175, 270
MalI	GATC	1 cut(s)	620
MbiI	CCGCTC	1 cut(s)	493
MboI	GATC	1 cut(s)	618
MboII	GAAGA	6 cut(s)	29, 133, 139, 203, 360, 648
MluCI	AATT	2 cut(s)	236, 461
MlyI	GAGTC	3 cut(s)	308, 341, 462
MroI	TCCGGA	1 cut(s)	597
MseI	TTAA	1 cut(s)	257
MslI	CAYNNNNRTG	1 cut(s)	473
MspA1I	CMGCKG	1 cut(s)	296
MspI	CCGG	1 cut(s)	598
MwoI	GCNNNNNNNGC	4 cut(s)	217, 302, 386, 518
NdeII	GATC	1 cut(s)	618
NlaIII	CATG	3 cut(s)	478, 619, 632
NspV	TTCGAA	1 cut(s)	137
PcsI	WCGNNNNNNNCGW	4 cut(s)	81, 84, 87, 90
PfeI	GAWTC	3 cut(s)	139, 248, 590
PkrI	GCNGC	3 cut(s)	54, 388, 495
PleI	GAGTC	3 cut(s)	307, 340, 461
PpsI	GAGTC	3 cut(s)	307, 340, 461
PspPI	GGNCC	2 cut(s)	316, 572
PvuII	CAGCTG	1 cut(s)	296
RseI	CAYNNNNRTG	1 cut(s)	473
SaqAI	TTAA	1 cut(s)	257
SatI	GCNGC	3 cut(s)	53, 387, 494
Sau3AI	GATC	1 cut(s)	618
Sau96I	GGNCC	2 cut(s)	316, 572
SchI	GAGTC	3 cut(s)	308, 341, 462
SfaNI	GCATC	3 cut(s)	299, 367, 568
SfuI	TTCGAA	1 cut(s)	137
SinI	GGWCC	2 cut(s)	316, 572
SmiMI	CAYNNNNRTG	1 cut(s)	473
Sse9I	AATT	2 cut(s)	236, 461
SsiI	CCGC	2 cut(s)	218, 493
StyI	CCWWGG	1 cut(s)	663
TaaI	ACNGT	2 cut(s)	167, 181
TaqI	TCGA	6 cut(s)	24, 36, 75, 137, 621, 673
TasI	AATT	2 cut(s)	236, 461
TauI	GCSGC	1 cut(s)	496
TfiI	GAWTC	3 cut(s)	139, 248, 590
Tru1I	TTAA	1 cut(s)	257
Tru9I	TTAA	1 cut(s)	257
TscAI	CASTG	1 cut(s)	172
TseI	GCWGC	2 cut(s)	52, 386
TspRI	CASTG	1 cut(s)	172
VpaK11BI	GGWCC	2 cut(s)	316, 572

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.