AT1G60740

thioredoxin-dependent peroxidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0010226
Physical Location & Seq
Forward (+)
22360977 .. 22362003
1027 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G60740.1

Sequence Viewer

Length: 489 bp
ATGGCTCCAATTACTGTCGGCGATGTTGTACCAGACGGAACTATCTCTTTCTTCGATGAAAATGATCAGCTTCAGACCGTCTCTGTTCACTCTATCGCCGCCGGTAAAAAAGTCATTCTCTTTGGTGTTCCTGGTGCTTTCACTCCCACATGCAGCATGAGCCATGTGCCTGGATTCATTGGGAAAGCAGAGGAGCTGAAGTCAAAGGGTATCGATGAGATCATTTGCTTTAGTGTGAATGATCCATTTGTGATGAAGGCATGGGGAAAGACATACCAAGAGAACAAGCATGTGAAGTTTGTAGCAGATGGGTCTGGAGAATACACACATCTTCTTGGACTTGAGCTTGATCTCAAGGACAAGGGTCTTGGTATTAGGTCAAGGAGATTTGCTCTGTTGCTTGATAACCTTAAGGTAACTGTAGCCAATGTCGAAAATGGTGGCGAGTTCACGGTTTCCAGCGCAGAGGATATCCTTAAGGCTCTCTAA

Protein Analysis

162

Amino Acids

17.47

Weight (kDa)

5.33

Isoelectric Point (pI)

27.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Redoxin PF08534 6 - 159 6.4e-32 Redoxin
AhpC-TSA PF00578 6 - 118 8.5e-11 AhpC/TSA family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010226)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G60740 AT1G65970 AT1G65980 AT1G65980
fragaria_vesca FvH4_1g05480
malus_domestica MD02G1062900.v1.1 MD10G1081800.v1.1 MD15G1353500.v1.1
prunus_persica Prupe.7G226400_v2.0.a1
pyrus_communis pycom02g04290 pycom15g17090
rosa_chinensis RchiOBHm_Chr2g0091161
rosa_laevigata RLG00000016187
rosa_multiflora Rmu_ssc0000457.1_g000001
rosa_roxburghii Rroxscaffold_2G00150480
rosa_rugosa Rorug02G0013900
rosa_samantha Rh2AG059800 Rh2BG058500 Rh2CG060300 Rh2DG059100
rosa_wichuraiana Rw2G005010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 99
AclWI GGATC 1 cut(s) 236
AcuI CTGAAG 2 cut(s) 56, 218
AfaI GTAC 1 cut(s) 30
AflII CTTAAG 2 cut(s) 410, 476
AjnI CCWGG 2 cut(s) 130, 169
AluBI AGCT 3 cut(s) 70, 196, 346
AluI AGCT 3 cut(s) 70, 196, 346
Alw26I GTCTC 1 cut(s) 85
AlwI GGATC 1 cut(s) 236
ApeKI GCWGC 1 cut(s) 153
AspLEI GCGC 1 cut(s) 464
BbvI GCAGC 1 cut(s) 165
BccI CCATC 1 cut(s) 302
BciT130I CCWGG 2 cut(s) 132, 171
BclI TGATCA 1 cut(s) 64
BcoDI GTCTC 1 cut(s) 85
BfmI CTRYAG 1 cut(s) 420
BfrI CTTAAG 2 cut(s) 410, 476
BisI GCNGC 2 cut(s) 99, 154
BlsI GCNGC 2 cut(s) 100, 155
Bme1390I CCNGG 2 cut(s) 132, 171
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 2 cut(s) 132, 171
BoxI GACNNNNGTC 1 cut(s) 363
BplI GAGNNNNNCTC 2 cut(s) 376, 408
BpmI CTGGAG 1 cut(s) 336
BpuEI CTTGAG 2 cut(s) 338, 362
Bsa29I ATCGAT 1 cut(s) 213
BsaXI ACNNNNNCTCC 2 cut(s) 185, 215
Bse118I RCCGGY 1 cut(s) 101
BseBI CCWGG 2 cut(s) 132, 171
BseCI ATCGAT 1 cut(s) 213
BseRI GAGGAG 1 cut(s) 206
BseXI GCAGC 1 cut(s) 165
BshVI ATCGAT 1 cut(s) 213
BsiSI CCGG 1 cut(s) 102
BsmAI GTCTC 1 cut(s) 85
BsmBI CGTCTC 1 cut(s) 85
Bsp143I GATC 4 cut(s) 64, 219, 241, 349
BspACI CCGC 1 cut(s) 99
BspDI ATCGAT 1 cut(s) 213
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 1 cut(s) 236
BspTI CTTAAG 2 cut(s) 410, 476
BsrFI RCCGGY 1 cut(s) 101
BssAI RCCGGY 1 cut(s) 101
BssMI GATC 4 cut(s) 64, 219, 241, 349
Bst2UI CCWGG 2 cut(s) 132, 171
Bst4CI ACNGT 4 cut(s) 16, 79, 421, 454
BstAFI CTTAAG 2 cut(s) 410, 476
BstHHI GCGC 1 cut(s) 464
BstKTI GATC 4 cut(s) 67, 222, 244, 352
BstMAI GTCTC 1 cut(s) 85
BstMBI GATC 4 cut(s) 64, 219, 241, 349
BstMWI GCNNNNNNNGC 1 cut(s) 159
BstNI CCWGG 2 cut(s) 132, 171
BstNSI RCATGY 2 cut(s) 153, 293
BstPAI GACNNNNGTC 1 cut(s) 363
BstSCI CCNGG 2 cut(s) 130, 169
BstSFI CTRYAG 1 cut(s) 420
BstV1I GCAGC 1 cut(s) 165
BstXI CCANNNNNNTGG 1 cut(s) 170
Bsu15I ATCGAT 1 cut(s) 213
BsuTUI ATCGAT 1 cut(s) 213
BtgZI GCGATG 1 cut(s) 36
CfoI GCGC 1 cut(s) 464
Cfr10I RCCGGY 1 cut(s) 101
ClaI ATCGAT 1 cut(s) 213
Csp6I GTAC 1 cut(s) 29
CviAII CATG 5 cut(s) 150, 157, 164, 261, 290
CviJI RGCY 7 cut(s) 5, 70, 162, 196, 346, 425, 482
CviKI_1 RGCY 7 cut(s) 5, 70, 162, 196, 346, 425, 482
CviQI GTAC 1 cut(s) 29
DpnI GATC 4 cut(s) 66, 221, 243, 351
DpnII GATC 4 cut(s) 64, 219, 241, 349
Eco32I GATATC 1 cut(s) 472
Eco57I CTGAAG 2 cut(s) 56, 218
EcoRII CCWGG 2 cut(s) 130, 169
EcoRV GATATC 1 cut(s) 472
Esp3I CGTCTC 1 cut(s) 85
FaeI CATG 5 cut(s) 153, 160, 167, 264, 293
FaiI YATR 6 cut(s) 151, 158, 165, 262, 274, 291
FatI CATG 5 cut(s) 149, 156, 163, 260, 289
FbaI TGATCA 1 cut(s) 64
Fnu4HI GCNGC 2 cut(s) 99, 154
Fsp4HI GCNGC 2 cut(s) 99, 154
GlaI GCGC 1 cut(s) 463
GluI GCNGC 2 cut(s) 99, 154
GsuI CTGGAG 1 cut(s) 336
HapII CCGG 1 cut(s) 102
HhaI GCGC 1 cut(s) 464
Hin1II CATG 5 cut(s) 153, 160, 167, 264, 293
Hin6I GCGC 1 cut(s) 462
HinP1I GCGC 1 cut(s) 462
HinfI GANTC 1 cut(s) 174
HpaII CCGG 1 cut(s) 102
Hpy166II GTNNAC 2 cut(s) 88, 450
Hpy188I TCNGA 1 cut(s) 75
Hpy188III TCNNGA 1 cut(s) 315
Hpy8I GTNNAC 2 cut(s) 88, 450
HpyAV CCTTC 1 cut(s) 250
HpyCH4III ACNGT 4 cut(s) 16, 79, 421, 454
HpyCH4V TGCA 1 cut(s) 153
HpyF10VI GCNNNNNNNGC 1 cut(s) 159
Hsp92II CATG 5 cut(s) 153, 160, 167, 264, 293
HspAI GCGC 1 cut(s) 462
Ksp22I TGATCA 1 cut(s) 64
Kzo9I GATC 4 cut(s) 64, 219, 241, 349
LmnI GCTCC 2 cut(s) 10, 193
LpnPI CCDG 8 cut(s) 45, 115, 117, 144, 156, 183, 300, 472
Lsp1109I GCAGC 1 cut(s) 165
MaeIII GTNAC 1 cut(s) 415
MalI GATC 4 cut(s) 66, 221, 243, 351
MboI GATC 4 cut(s) 64, 219, 241, 349
MboII GAAGA 2 cut(s) 43, 323
MluCI AATT 1 cut(s) 9
MnlI CCTC 2 cut(s) 184, 460
MseI TTAA 2 cut(s) 411, 477
MspCI CTTAAG 2 cut(s) 410, 476
MspI CCGG 1 cut(s) 102
MspR9I CCNGG 2 cut(s) 132, 171
MvaI CCWGG 2 cut(s) 132, 171
MwoI GCNNNNNNNGC 1 cut(s) 159
NdeII GATC 4 cut(s) 64, 219, 241, 349
NlaIII CATG 5 cut(s) 153, 160, 167, 264, 293
NlaIV GGNNCC 1 cut(s) 6
NspI RCATGY 2 cut(s) 153, 293
PfeI GAWTC 1 cut(s) 174
PkrI GCNGC 2 cut(s) 100, 155
PshAI GACNNNNGTC 1 cut(s) 363
Psp6I CCWGG 2 cut(s) 130, 169
PspGI CCWGG 2 cut(s) 130, 169
PspN4I GGNNCC 1 cut(s) 6
RsaI GTAC 1 cut(s) 30
RsaNI GTAC 1 cut(s) 29
SaqAI TTAA 2 cut(s) 411, 477
SatI GCNGC 2 cut(s) 99, 154
Sau3AI GATC 4 cut(s) 64, 219, 241, 349
ScrFI CCNGG 2 cut(s) 132, 171
SetI ASST 6 cut(s) 72, 198, 348, 380, 411, 417
SfcI CTRYAG 1 cut(s) 420
SmlI CTYRAG 4 cut(s) 341, 353, 410, 476
SmoI CTYRAG 4 cut(s) 341, 353, 410, 476
Sse9I AATT 1 cut(s) 9
SsiI CCGC 1 cut(s) 99
StyD4I CCNGG 2 cut(s) 130, 169
TaaI ACNGT 4 cut(s) 16, 79, 421, 454
TaqI TCGA 3 cut(s) 54, 213, 432
TasI AATT 1 cut(s) 9
TauI GCSGC 1 cut(s) 101
TfiI GAWTC 1 cut(s) 174
Tru1I TTAA 2 cut(s) 411, 477
Tru9I TTAA 2 cut(s) 411, 477
TseI GCWGC 1 cut(s) 153
TspDTI ATGAA 3 cut(s) 72, 166, 269
TspGWI ACGGA 1 cut(s) 51
Vha464I CTTAAG 2 cut(s) 410, 476
XceI RCATGY 2 cut(s) 153, 293
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.