FvH4_1g05480

peroxiredoxin activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0010226
Physical Location & Seq
Reverse (-)
2893137 .. 2895369
2233 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g05480.t1

Sequence Viewer

Length: 489 bp
ATGGCCCCGATTGCCGTCGGCGATTCTCTCCCGGACGGTACTCTGTCCTACTTCGACGACCAAGACCAGATGCAGACGGTCAACATTCACTCCCTCGCCGCCGGCAAGAAGATCATCCTCTTCGGTGTCCCCGGCGCCTTCACCCCCACTTGCAGTCTGAAGCATGTTCCTGGATATATTGAGAAAGCGGACGAGCTTAAATCCAAGGGTGTGGATAAGATTCTGTGCCTCAGTGTGAATGACCCCTTTGTGATGAAGGCATGGGCTAAAACCTACCCCGAGAACAAGAATGTCCTGTTCCTTGCTGACGGCTCAGCCAAATACACCCATGAGCTTGGTCTCGAGCTTGATCTTTCGGAGAAAGGACTTGGAACTCGTTCCAGGAGGTTTGCTCTCTTGGTTGATGACCTCAAGGTGAAGGCTGCAAATGTTGAATCTGGAGGAGAATTCACCGTCTCCAGTGCTGATGACATCCTTAAGGCTCTCTGA

Protein Analysis

163

Amino Acids

17.47

Weight (kDa)

5.35

Isoelectric Point (pI)

30.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Redoxin PF08534 6 - 159 5.2e-36 Redoxin
AhpC-TSA PF00578 6 - 123 1e-11 AhpC/TSA family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010226)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G60740 AT1G65970 AT1G65980 AT1G65980
fragaria_vesca FvH4_1g05480
malus_domestica MD02G1062900.v1.1 MD10G1081800.v1.1 MD15G1353500.v1.1
prunus_persica Prupe.7G226400_v2.0.a1
pyrus_communis pycom02g04290 pycom15g17090
rosa_chinensis RchiOBHm_Chr2g0091161
rosa_laevigata RLG00000016187
rosa_multiflora Rmu_ssc0000457.1_g000001
rosa_roxburghii Rroxscaffold_2G00150480
rosa_rugosa Rorug02G0013900
rosa_samantha Rh2AG059800 Rh2BG058500 Rh2CG060300 Rh2DG059100
rosa_wichuraiana Rw2G005010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 134
AciI CCGC 2 cut(s) 99, 188
AcsI RAATTY 1 cut(s) 446
AcuI CTGAAG 1 cut(s) 179
AcyI GRCGYC 1 cut(s) 135
AfaI GTAC 1 cut(s) 40
AflII CTTAAG 1 cut(s) 476
AgsI TTSAA 1 cut(s) 434
AjnI CCWGG 2 cut(s) 169, 380
AluBI AGCT 3 cut(s) 196, 334, 346
AluI AGCT 3 cut(s) 196, 334, 346
Alw26I GTCTC 2 cut(s) 344, 460
Ama87I CYCGRG 2 cut(s) 278, 341
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 422
ApoI RAATTY 1 cut(s) 446
Asp700I GAANNNNTTC 1 cut(s) 376
AspLEI GCGC 1 cut(s) 137
AspS9I GGNCC 1 cut(s) 4
AsuC2I CCSGG 2 cut(s) 32, 132
AsuHPI GGTGA 3 cut(s) 133, 427, 442
AvaI CYCGRG 2 cut(s) 278, 341
BanI GGYRCC 1 cut(s) 134
BbvI GCAGC 1 cut(s) 409
BceAI ACGGC 1 cut(s) 325
BciT130I CCWGG 2 cut(s) 171, 382
BcnI CCSGG 2 cut(s) 32, 132
BcoDI GTCTC 2 cut(s) 344, 460
BfoI RGCGCY 1 cut(s) 138
BfrI CTTAAG 1 cut(s) 476
BisI GCNGC 2 cut(s) 99, 423
BlpI GCTNAGC 1 cut(s) 313
BlsI GCNGC 2 cut(s) 100, 424
Bme1390I CCNGG 4 cut(s) 32, 132, 171, 382
BmeT110I CYCGRG 2 cut(s) 278, 341
BmgT120I GGNCC 1 cut(s) 4
BmiI GGNNCC 2 cut(s) 6, 136
BmrFI CCNGG 4 cut(s) 32, 132, 171, 382
BmsI GCATC 1 cut(s) 60
BplI GAGNNNNNCTC 2 cut(s) 376, 408
BpmI CTGGAG 2 cut(s) 442, 459
Bpu1102I GCTNAGC 1 cut(s) 313
BpuEI CTTGAG 1 cut(s) 395
BpuMI CCSGG 2 cut(s) 32, 132
BsaHI GRCGYC 1 cut(s) 135
BsaI GGTCTC 1 cut(s) 344
BsaJI CCNNGG 2 cut(s) 130, 204
BsaXI ACNNNNNCTCC 2 cut(s) 74, 104
Bse118I RCCGGY 1 cut(s) 101
Bse1I ACTGG 1 cut(s) 459
BseBI CCWGG 2 cut(s) 171, 382
BseDI CCNNGG 2 cut(s) 130, 204
BseGI GGATG 2 cut(s) 114, 471
BseMII CTCAG 2 cut(s) 244, 327
BseNI ACTGG 1 cut(s) 459
BseRI GAGGAG 1 cut(s) 456
BseXI GCAGC 1 cut(s) 409
BshFI GGCC 1 cut(s) 5
BshNI GGYRCC 1 cut(s) 134
BsiHKCI CYCGRG 2 cut(s) 278, 341
BsiSI CCGG 3 cut(s) 32, 102, 132
BslFI GGGAC 1 cut(s) 113
BsmAI GTCTC 2 cut(s) 344, 460
BsmBI CGTCTC 1 cut(s) 460
BsmFI GGGAC 1 cut(s) 113
BsnI GGCC 1 cut(s) 5
Bso31I GGTCTC 1 cut(s) 344
BsoBI CYCGRG 2 cut(s) 278, 341
Bsp143I GATC 2 cut(s) 111, 349
Bsp1720I GCTNAGC 1 cut(s) 313
BspACI CCGC 2 cut(s) 99, 188
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 2 cut(s) 243, 326
BspLI GGNNCC 2 cut(s) 6, 136
BspT107I GGYRCC 1 cut(s) 134
BspTI CTTAAG 1 cut(s) 476
BspTNI GGTCTC 1 cut(s) 344
BsrFI RCCGGY 1 cut(s) 101
BsrI ACTGG 1 cut(s) 459
BssAI RCCGGY 1 cut(s) 101
BssECI CCNNGG 2 cut(s) 130, 204
BssMI GATC 2 cut(s) 111, 349
BssNI GRCGYC 1 cut(s) 135
BssT1I CCWWGG 1 cut(s) 204
Bst2UI CCWGG 2 cut(s) 171, 382
Bst4CI ACNGT 3 cut(s) 38, 79, 454
Bst6I CTCTTC 1 cut(s) 125
BstACI GRCGYC 1 cut(s) 135
BstAFI CTTAAG 1 cut(s) 476
BstC8I GCNNGC 1 cut(s) 103
BstDEI CTNAG 2 cut(s) 230, 313
BstF5I GGATG 2 cut(s) 114, 471
BstH2I RGCGCY 1 cut(s) 138
BstHHI GCGC 1 cut(s) 137
BstKTI GATC 2 cut(s) 114, 352
BstMAI GTCTC 2 cut(s) 344, 460
BstMBI GATC 2 cut(s) 111, 349
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstNI CCWGG 2 cut(s) 171, 382
BstNSI RCATGY 1 cut(s) 167
BstSCI CCNGG 4 cut(s) 30, 130, 169, 380
BstV1I GCAGC 1 cut(s) 409
BstXI CCANNNNNNTGG 2 cut(s) 211, 335
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 2 cut(s) 114, 471
BtsIMutI CAGTG 2 cut(s) 238, 466
Cac8I GCNNGC 1 cut(s) 103
CfoI GCGC 1 cut(s) 137
Cfr10I RCCGGY 1 cut(s) 101
Cfr13I GGNCC 1 cut(s) 4
Csp6I GTAC 1 cut(s) 39
CviAII CATG 3 cut(s) 164, 261, 329
CviJI RGCY 9 cut(s) 5, 196, 266, 312, 317, 334, 346, 422, 482
CviKI_1 RGCY 9 cut(s) 5, 196, 266, 312, 317, 334, 346, 422, 482
CviQI GTAC 1 cut(s) 39
DdeI CTNAG 2 cut(s) 230, 313
DinI GGCGCC 1 cut(s) 136
DpnI GATC 2 cut(s) 113, 351
DpnII GATC 2 cut(s) 111, 349
Eam1104I CTCTTC 1 cut(s) 125
EarI CTCTTC 1 cut(s) 125
Eco130I CCWWGG 1 cut(s) 204
Eco31I GGTCTC 1 cut(s) 344
Eco57I CTGAAG 1 cut(s) 179
Eco88I CYCGRG 2 cut(s) 278, 341
EcoRI GAATTC 1 cut(s) 446
EcoRII CCWGG 2 cut(s) 169, 380
EcoT14I CCWWGG 1 cut(s) 204
EgeI GGCGCC 1 cut(s) 136
EheI GGCGCC 1 cut(s) 136
ErhI CCWWGG 1 cut(s) 204
Esp3I CGTCTC 1 cut(s) 460
FaeI CATG 3 cut(s) 167, 264, 332
FaiI YATR 4 cut(s) 165, 177, 262, 330
FaqI GGGAC 1 cut(s) 113
FatI CATG 3 cut(s) 163, 260, 328
Fnu4HI GCNGC 2 cut(s) 99, 423
FokI GGATG 2 cut(s) 101, 458
Fsp4HI GCNGC 2 cut(s) 99, 423
GlaI GCGC 1 cut(s) 136
GluI GCNGC 2 cut(s) 99, 423
GsuI CTGGAG 2 cut(s) 442, 459
HaeII RGCGCY 1 cut(s) 138
HaeIII GGCC 1 cut(s) 5
HapII CCGG 3 cut(s) 32, 102, 132
HhaI GCGC 1 cut(s) 137
Hin1I GRCGYC 1 cut(s) 135
Hin1II CATG 3 cut(s) 167, 264, 332
Hin6I GCGC 1 cut(s) 135
HinP1I GCGC 1 cut(s) 135
HincII GTYRAC 1 cut(s) 82
HindII GTYRAC 1 cut(s) 82
HinfI GANTC 3 cut(s) 23, 220, 434
HpaII CCGG 3 cut(s) 32, 102, 132
HphI GGTGA 3 cut(s) 133, 427, 442
Hpy166II GTNNAC 1 cut(s) 82
Hpy188I TCNGA 3 cut(s) 159, 358, 488
Hpy188III TCNNGA 2 cut(s) 341, 438
Hpy8I GTNNAC 1 cut(s) 82
Hpy99I CGWCG 2 cut(s) 20, 59
HpyAV CCTTC 3 cut(s) 148, 250, 412
HpyCH4III ACNGT 3 cut(s) 38, 79, 454
HpyCH4V TGCA 3 cut(s) 73, 153, 425
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 2 cut(s) 230, 313
Hsp92I GRCGYC 1 cut(s) 135
Hsp92II CATG 3 cut(s) 167, 264, 332
HspAI GCGC 1 cut(s) 135
KasI GGCGCC 1 cut(s) 134
KroI GCCGGC 1 cut(s) 101
KroNI GCCGGC 1 cut(s) 103
Kzo9I GATC 2 cut(s) 111, 349
Lsp1109I GCAGC 1 cut(s) 409
LweI GCATC 1 cut(s) 60
MalI GATC 2 cut(s) 113, 351
MboI GATC 2 cut(s) 111, 349
MboII GAAGA 2 cut(s) 112, 121
MluCI AATT 1 cut(s) 446
Mly113I GGCGCC 1 cut(s) 135
MnlI CCTC 6 cut(s) 104, 128, 239, 378, 419, 434
MroNI GCCGGC 1 cut(s) 101
MroXI GAANNNNTTC 1 cut(s) 376
MseI TTAA 2 cut(s) 198, 477
MspCI CTTAAG 1 cut(s) 476
MspI CCGG 3 cut(s) 32, 102, 132
MspR9I CCNGG 4 cut(s) 32, 132, 171, 382
MvaI CCWGG 2 cut(s) 171, 382
MwoI GCNNNNNNNGC 1 cut(s) 11
NaeI GCCGGC 1 cut(s) 103
NarI GGCGCC 1 cut(s) 135
NciI CCSGG 2 cut(s) 32, 132
NdeII GATC 2 cut(s) 111, 349
NgoMIV GCCGGC 1 cut(s) 101
NlaIII CATG 3 cut(s) 167, 264, 332
NlaIV GGNNCC 2 cut(s) 6, 136
NspI RCATGY 1 cut(s) 167
PaeR7I CTCGAG 1 cut(s) 341
PdiI GCCGGC 1 cut(s) 103
PdmI GAANNNNTTC 1 cut(s) 376
PfeI GAWTC 3 cut(s) 23, 220, 434
PfoI TCCNGGA 3 cut(s) 30, 169, 380
PkrI GCNGC 2 cut(s) 100, 424
PluTI GGCGCC 1 cut(s) 138
Psp6I CCWGG 2 cut(s) 169, 380
PspGI CCWGG 2 cut(s) 169, 380
PspN4I GGNNCC 2 cut(s) 6, 136
PspPI GGNCC 1 cut(s) 4
RsaI GTAC 1 cut(s) 40
RsaNI GTAC 1 cut(s) 39
SaqAI TTAA 2 cut(s) 198, 477
SatI GCNGC 2 cut(s) 99, 423
Sau3AI GATC 2 cut(s) 111, 349
Sau96I GGNCC 1 cut(s) 4
ScrFI CCNGG 4 cut(s) 32, 132, 171, 382
SetI ASST 7 cut(s) 198, 275, 336, 348, 389, 411, 417
SfaNI GCATC 1 cut(s) 60
SfoI GGCGCC 1 cut(s) 136
Sfr274I CTCGAG 1 cut(s) 341
SlaI CTCGAG 1 cut(s) 341
SmlI CTYRAG 3 cut(s) 341, 410, 476
SmoI CTYRAG 3 cut(s) 341, 410, 476
Sse9I AATT 1 cut(s) 446
SsiI CCGC 2 cut(s) 99, 188
SspDI GGCGCC 1 cut(s) 134
StyD4I CCNGG 4 cut(s) 30, 130, 169, 380
StyI CCWWGG 1 cut(s) 204
TaaI ACNGT 3 cut(s) 38, 79, 454
TaqI TCGA 2 cut(s) 54, 342
TasI AATT 1 cut(s) 446
TauI GCSGC 1 cut(s) 101
TfiI GAWTC 3 cut(s) 23, 220, 434
Tru1I TTAA 2 cut(s) 198, 477
Tru9I TTAA 2 cut(s) 198, 477
TscAI CASTG 2 cut(s) 238, 466
TseI GCWGC 1 cut(s) 422
TspDTI ATGAA 1 cut(s) 269
TspRI CASTG 2 cut(s) 238, 466
Vha464I CTTAAG 1 cut(s) 476
XapI RAATTY 1 cut(s) 446
XceI RCATGY 1 cut(s) 167
XhoI CTCGAG 1 cut(s) 341
XmnI GAANNNNTTC 1 cut(s) 376
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.