Rorug02G0013900

peroxiredoxin activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0010226
Physical Location & Seq
Forward (+)
1186396 .. 1187837
1442 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0013900.1

Sequence Viewer

Length: 1176 bp
ATGTCTTCCAAAACTAGAACCCTTTCATTTCTCTTCTCTGCCCTCCTCTTCCTTACCCACCTCAATGTCTCCACCGCCCAAACCACTGTCGTTAAAGCCGCCTACTGGTTTCCGTACAGCGGCAAAGAAGTCTCGGCCATAAACTCCACCCTCTTCACCCACCTCTTCTGCGCATTCGCCGATCTCAACCTCACAACTTACCAAGTCACCATTTCCTCCGAAGTCTCACCCCAGTTCTCAAGTTTCACACAAACAGTCCAACAGAAAAACCCTAATGTCAAAACCCTCCTCTCCATTGGCGGAGGAAACTCCAGCCCTTCCACCTTCGCCGCCATGGCCAGCCAGGCCACCCGTCGCAAAGCATTCATAGACTCATCCATCAAATTGGCGAGGAACTACTCCTTCTACGGCCTTGACCTAGATTGGGAGTACCCTTCCTCCGCCACCGAGATGACCCACTTCGGAAGCCTCCTCACCGAATGGCGGTCCGCGGTGGCCAAAGAGTCATGCACTTCCGGCAAGACGGCATTGCTGTTGACCGCTGCAGTCTTCCGCAATGCATCTTATTACCGCATAAACTATCCGTTCAAGGCTATTTCGAGCAGCCTGGACTGGATCAACCTCATGACGTATGACTACTACGGCCCTAGTTTCTTCGAAGGCAAAACCAACACTTACCCGCCAGCTGCATTATACAACGGTGGATCCACCATTCTCGTCAACGGGGACTCCGGAATCGTGACGTGGATCAACAACGCCAGAATCTCAACCAAGAAGATAGTTATTGGTCTTCCCTTTTACGGGCGCGCTTGGAAATTGTTAAACCCTAACAACCATGGATATTTCGCTCCGGCTAATGGCTCGGCTATCGGGGCTGATGGAAACCAGCTCTACAACCAGATTAGGGTTTTGATCAGCCGCGGGTTTCAGACGGTGTACAATGCCACGGTGGTTGGTAACTACTGTTACAATGGGACGACTTGGATTGGTTACGATGATACGCAGAGTATTAGGGCCAAGGTTTCGTATGCTAAAGGAAAGTCACTTCTTGGTTACATTGCTTGGCATACTGGTGCTGACACAAATACTTGGACTCTTGCTCAAACAGTACATGGGGATGAGCAGCTAGTCATTGTTGATATTAGAATGAATTACATGCATGCACTGATTTACTAA

Protein Analysis

391

Amino Acids

43.27

Weight (kDa)

9.23

Isoelectric Point (pI)

27.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_18 PF00704 34 - 360 1.9e-72 Glycosyl hydrolases family 18
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010226)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G60740 AT1G65970 AT1G65980 AT1G65980
fragaria_vesca FvH4_1g05480
malus_domestica MD02G1062900.v1.1 MD10G1081800.v1.1 MD15G1353500.v1.1
prunus_persica Prupe.7G226400_v2.0.a1
pyrus_communis pycom02g04290 pycom15g17090
rosa_chinensis RchiOBHm_Chr2g0091161
rosa_laevigata RLG00000016187
rosa_multiflora Rmu_ssc0000457.1_g000001
rosa_roxburghii Rroxscaffold_2G00150480
rosa_rugosa Rorug02G0013900
rosa_samantha Rh2AG059800 Rh2BG058500 Rh2CG060300 Rh2DG059100
rosa_wichuraiana Rw2G005010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 172
AccII CGCG 3 cut(s) 491, 807, 921
AccIII TCCGGA 1 cut(s) 731
AclWI GGATC 4 cut(s) 623, 699, 712, 755
AcoI YGGCCR 3 cut(s) 135, 336, 495
AfaI GTAC 4 cut(s) 116, 431, 938, 1110
AfiI CCNNNNNNNGG 8 cut(s) 105, 119, 424, 483, 800, 801, 857, 904
AgsI TTSAA 1 cut(s) 589
AjiI CACGTC 1 cut(s) 744
AjnI CCWGG 2 cut(s) 342, 606
AluBI AGCT 3 cut(s) 686, 889, 1126
AluI AGCT 3 cut(s) 686, 889, 1126
Alw26I GTCTC 3 cut(s) 73, 136, 229
AlwI GGATC 4 cut(s) 623, 699, 712, 755
Aor13HI TCCGGA 1 cut(s) 731
AoxI GGCC 7 cut(s) 135, 336, 345, 409, 495, 643, 1014
ApeKI GCWGC 4 cut(s) 542, 603, 686, 1123
Asp700I GAANNNNTTC 1 cut(s) 22
AspLEI GCGC 3 cut(s) 173, 807, 809
AspS9I GGNCC 3 cut(s) 486, 644, 1014
AsuHPI GGTGA 4 cut(s) 148, 199, 219, 466
AsuII TTCGAA 1 cut(s) 657
AvaII GGWCC 1 cut(s) 486
BalI TGGCCA 2 cut(s) 338, 497
BamHI GGATCC 1 cut(s) 704
BbsI GAAGAC 2 cut(s) 541, 782
BbvI GCAGC 4 cut(s) 529, 615, 673, 1135
BccI CCATC 2 cut(s) 386, 872
BceAI ACGGC 3 cut(s) 424, 540, 658
BciT130I CCWGG 2 cut(s) 344, 608
BclI TGATCA 1 cut(s) 912
BcoDI GTCTC 3 cut(s) 73, 136, 229
BfaI CTAG 4 cut(s) 15, 419, 648, 1127
BfmI CTRYAG 1 cut(s) 543
BglI GCCNNNNNGGC 2 cut(s) 335, 344
BisI GCNGC 8 cut(s) 99, 121, 330, 543, 604, 687, 919, 1124
BlsI GCNGC 8 cut(s) 100, 122, 331, 544, 605, 688, 920, 1125
Bme1390I CCNGG 2 cut(s) 344, 608
Bme18I GGWCC 1 cut(s) 486
BmgBI CACGTC 1 cut(s) 744
BmgT120I GGNCC 3 cut(s) 486, 644, 1014
BmiI GGNNCC 1 cut(s) 706
BmrFI CCNGG 2 cut(s) 344, 608
BmrI ACTGGG 1 cut(s) 226
BmsI GCATC 1 cut(s) 569
BmuI ACTGGG 1 cut(s) 226
BpiI GAAGAC 2 cut(s) 541, 782
BpmI CTGGAG 1 cut(s) 295
Bpu14I TTCGAA 1 cut(s) 657
BpuEI CTTGAG 1 cut(s) 223
BsaJI CCNNGG 6 cut(s) 333, 489, 835, 919, 945, 1017
BsaWI WCCGGW 1 cut(s) 731
BsaXI ACNNNNNCTCC 4 cut(s) 422, 452, 713, 743
Bsc4I CCNNNNNNNGG 8 cut(s) 105, 119, 424, 483, 800, 801, 857, 904
Bse1I ACTGG 4 cut(s) 110, 232, 617, 1075
Bse3DI GCAATG 3 cut(s) 527, 562, 1056
BseAI TCCGGA 1 cut(s) 731
BseBI CCWGG 2 cut(s) 344, 608
BseDI CCNNGG 6 cut(s) 333, 489, 835, 919, 945, 1017
BseGI GGATG 2 cut(s) 374, 1123
BseLI CCNNNNNNNGG 8 cut(s) 105, 119, 424, 483, 800, 801, 857, 904
BseMI GCAATG 3 cut(s) 527, 562, 1056
BseNI ACTGG 4 cut(s) 110, 232, 617, 1075
BsePI GCGCGC 1 cut(s) 805
BseRI GAGGAG 3 cut(s) 35, 278, 461
BseXI GCAGC 4 cut(s) 529, 615, 673, 1135
Bsh1236I CGCG 3 cut(s) 491, 807, 921
BshFI GGCC 7 cut(s) 137, 338, 347, 411, 497, 645, 1016
BsiSI CCGG 3 cut(s) 516, 732, 851
BslFI GGGAC 2 cut(s) 740, 988
BslI CCNNNNNNNGG 8 cut(s) 105, 119, 424, 483, 800, 801, 857, 904
BsmAI GTCTC 3 cut(s) 73, 136, 229
BsmFI GGGAC 2 cut(s) 740, 988
BsmI GAATGC 2 cut(s) 173, 362
BsnI GGCC 7 cut(s) 137, 338, 347, 411, 497, 645, 1016
Bsp119I TTCGAA 1 cut(s) 657
Bsp13I TCCGGA 1 cut(s) 731
Bsp1407I TGTACA 1 cut(s) 936
Bsp143I GATC 5 cut(s) 181, 615, 704, 747, 912
Bsp19I CCATGG 2 cut(s) 333, 835
BspANI GGCC 7 cut(s) 137, 338, 347, 411, 497, 645, 1016
BspEI TCCGGA 1 cut(s) 731
BspFNI CGCG 3 cut(s) 491, 807, 921
BspHI TCATGA 1 cut(s) 624
BspLI GGNNCC 1 cut(s) 706
BspMAI CTGCAG 1 cut(s) 547
BspPI GGATC 4 cut(s) 623, 699, 712, 755
BspT104I TTCGAA 1 cut(s) 657
BsrDI GCAATG 3 cut(s) 527, 562, 1056
BsrGI TGTACA 1 cut(s) 936
BsrI ACTGG 4 cut(s) 110, 232, 617, 1075
BssECI CCNNGG 6 cut(s) 333, 489, 835, 919, 945, 1017
BssHII GCGCGC 1 cut(s) 805
BssMI GATC 5 cut(s) 181, 615, 704, 747, 912
BssT1I CCWWGG 3 cut(s) 333, 835, 1017
Bst2UI CCWGG 2 cut(s) 344, 608
Bst4CI ACNGT 7 cut(s) 88, 256, 701, 934, 949, 965, 1108
Bst6I CTCTTC 4 cut(s) 38, 53, 158, 170
BstAUI TGTACA 1 cut(s) 936
BstBI TTCGAA 1 cut(s) 657
BstC8I GCNNGC 4 cut(s) 340, 684, 807, 1161
BstDSI CCRYGG 5 cut(s) 333, 489, 835, 919, 945
BstF5I GGATG 2 cut(s) 374, 1123
BstFNI CGCG 3 cut(s) 491, 807, 921
BstHHI GCGC 3 cut(s) 173, 807, 809
BstKTI GATC 5 cut(s) 184, 618, 707, 750, 915
BstMAI GTCTC 3 cut(s) 73, 136, 229
BstMBI GATC 5 cut(s) 181, 615, 704, 747, 912
BstMWI GCNNNNNNNGC 4 cut(s) 335, 344, 516, 872
BstNI CCWGG 2 cut(s) 344, 608
BstNSI RCATGY 2 cut(s) 1159, 1163
BstSCI CCNGG 2 cut(s) 342, 606
BstSFI CTRYAG 1 cut(s) 543
BstUI CGCG 3 cut(s) 491, 807, 921
BstV1I GCAGC 4 cut(s) 529, 615, 673, 1135
BstV2I GAAGAC 2 cut(s) 541, 782
BstX2I RGATCY 1 cut(s) 704
BstXI CCANNNNNNTGG 1 cut(s) 385
BstYI RGATCY 1 cut(s) 704
BsuRI GGCC 7 cut(s) 137, 338, 347, 411, 497, 645, 1016
BtgI CCRYGG 5 cut(s) 333, 489, 835, 919, 945
BtrI CACGTC 1 cut(s) 744
BtsCI GGATG 2 cut(s) 374, 1123
BtsIMutI CAGTG 2 cut(s) 84, 1163
Cac8I GCNNGC 4 cut(s) 340, 684, 807, 1161
CciI TCATGA 1 cut(s) 624
CfoI GCGC 3 cut(s) 173, 807, 809
Cfr13I GGNCC 3 cut(s) 486, 644, 1014
Cfr42I CCGCGG 2 cut(s) 492, 922
CpoI CGGWCCG 1 cut(s) 486
Csp6I GTAC 4 cut(s) 115, 430, 937, 1109
CspCI CAANNNNNGTGG 2 cut(s) 934, 969
CspI CGGWCCG 1 cut(s) 486
CviAII CATG 7 cut(s) 334, 507, 625, 836, 1112, 1156, 1160
CviQI GTAC 4 cut(s) 115, 430, 937, 1109
DpnI GATC 5 cut(s) 183, 617, 706, 749, 914
DpnII GATC 5 cut(s) 181, 615, 704, 747, 912
EaeI YGGCCR 3 cut(s) 135, 336, 495
Eam1104I CTCTTC 4 cut(s) 38, 53, 158, 170
EarI CTCTTC 4 cut(s) 38, 53, 158, 170
EciI GGCGGA 2 cut(s) 315, 430
Eco130I CCWWGG 3 cut(s) 333, 835, 1017
Eco47I GGWCC 1 cut(s) 486
EcoRII CCWGG 2 cut(s) 342, 606
EcoT14I CCWWGG 3 cut(s) 333, 835, 1017
EcoT22I ATGCAT 2 cut(s) 562, 1161
ErhI CCWWGG 3 cut(s) 333, 835, 1017
FaeI CATG 7 cut(s) 337, 510, 628, 839, 1115, 1159, 1163
FaqI GGGAC 2 cut(s) 740, 988
FatI CATG 7 cut(s) 333, 506, 624, 835, 1111, 1155, 1159
FauI CCCGC 2 cut(s) 687, 914
FbaI TGATCA 1 cut(s) 912
Fnu4HI GCNGC 8 cut(s) 99, 121, 330, 543, 604, 687, 919, 1124
FokI GGATG 2 cut(s) 361, 1130
Fsp4HI GCNGC 8 cut(s) 99, 121, 330, 543, 604, 687, 919, 1124
FspBI CTAG 4 cut(s) 15, 419, 648, 1127
FspI TGCGCA 1 cut(s) 172
GlaI GCGC 3 cut(s) 172, 806, 808
GluI GCNGC 8 cut(s) 99, 121, 330, 543, 604, 687, 919, 1124
GsuI CTGGAG 1 cut(s) 295
HaeIII GGCC 7 cut(s) 137, 338, 347, 411, 497, 645, 1016
HapII CCGG 3 cut(s) 516, 732, 851
HhaI GCGC 3 cut(s) 173, 807, 809
Hin1II CATG 7 cut(s) 337, 510, 628, 839, 1115, 1159, 1163
Hin6I GCGC 3 cut(s) 171, 805, 807
HinP1I GCGC 3 cut(s) 171, 805, 807
HincII GTYRAC 2 cut(s) 537, 721
HindII GTYRAC 2 cut(s) 537, 721
HinfI GANTC 6 cut(s) 371, 503, 728, 735, 762, 1093
HpaII CCGG 3 cut(s) 516, 732, 851
HphI GGTGA 4 cut(s) 148, 199, 219, 466
Hpy166II GTNNAC 3 cut(s) 537, 721, 937
Hpy188I TCNGA 3 cut(s) 220, 464, 930
Hpy188III TCNNGA 3 cut(s) 625, 732, 739
Hpy8I GTNNAC 3 cut(s) 537, 721, 937
Hpy99I CGWCG 1 cut(s) 357
HpyAV CCTTC 5 cut(s) 327, 334, 412, 444, 653
HpyCH4III ACNGT 7 cut(s) 88, 256, 701, 934, 949, 965, 1108
HpyCH4IV ACGT 2 cut(s) 629, 743
HpyCH4V TGCA 6 cut(s) 510, 545, 560, 689, 1159, 1163
HpyF10VI GCNNNNNNNGC 4 cut(s) 335, 344, 516, 872
HpySE526I ACGT 2 cut(s) 629, 743
Hsp92II CATG 7 cut(s) 337, 510, 628, 839, 1115, 1159, 1163
HspAI GCGC 3 cut(s) 171, 805, 807
Kpn2I TCCGGA 1 cut(s) 731
Ksp22I TGATCA 1 cut(s) 912
KspI CCGCGG 2 cut(s) 492, 922
Kzo9I GATC 5 cut(s) 181, 615, 704, 747, 912
LmnI GCTCC 1 cut(s) 853
Lsp1109I GCAGC 4 cut(s) 529, 615, 673, 1135
LweI GCATC 1 cut(s) 569
MaeI CTAG 4 cut(s) 15, 419, 648, 1127
MaeII ACGT 2 cut(s) 629, 743
MaeIII GTNAC 7 cut(s) 205, 739, 956, 965, 989, 1041, 1052
MalI GATC 5 cut(s) 183, 617, 706, 749, 914
MboI GATC 5 cut(s) 181, 615, 704, 747, 912
MboII GAAGA 8 cut(s) 25, 40, 145, 157, 541, 646, 782, 787
MflI RGATCY 1 cut(s) 704
MlsI TGGCCA 2 cut(s) 338, 497
MluCI AATT 3 cut(s) 383, 815, 1150
MluNI TGGCCA 2 cut(s) 338, 497
MlyI GAGTC 4 cut(s) 365, 512, 722, 1087
MmeI TCCRAC 1 cut(s) 283
Mox20I TGGCCA 2 cut(s) 338, 497
Mph1103I ATGCAT 2 cut(s) 562, 1161
MroI TCCGGA 1 cut(s) 731
MroXI GAANNNNTTC 1 cut(s) 22
MscI TGGCCA 2 cut(s) 338, 497
MseI TTAA 2 cut(s) 93, 821
MslI CAYNNNNRTG 4 cut(s) 63, 449, 1071, 1116
Msp20I TGGCCA 2 cut(s) 338, 497
MspA1I CMGCKG 5 cut(s) 120, 491, 542, 686, 921
MspI CCGG 3 cut(s) 516, 732, 851
MspR9I CCNGG 2 cut(s) 344, 608
Mva1269I GAATGC 2 cut(s) 173, 362
MvaI CCWGG 2 cut(s) 344, 608
MvnI CGCG 3 cut(s) 491, 807, 921
MwoI GCNNNNNNNGC 4 cut(s) 335, 344, 516, 872
NcoI CCATGG 2 cut(s) 333, 835
NdeII GATC 5 cut(s) 181, 615, 704, 747, 912
NlaIII CATG 7 cut(s) 337, 510, 628, 839, 1115, 1159, 1163
NlaIV GGNNCC 1 cut(s) 706
NmeAIII GCCGAG 2 cut(s) 113, 842
NmuCI GTSAC 3 cut(s) 205, 739, 1041
NsbI TGCGCA 1 cut(s) 172
NsiI ATGCAT 2 cut(s) 562, 1161
NspI RCATGY 2 cut(s) 1159, 1163
NspV TTCGAA 1 cut(s) 657
PaeI GCATGC 1 cut(s) 1163
PagI TCATGA 1 cut(s) 624
PauI GCGCGC 1 cut(s) 805
PctI GAATGC 2 cut(s) 173, 362
PdmI GAANNNNTTC 1 cut(s) 22
PfeI GAWTC 2 cut(s) 735, 762
PkrI GCNGC 8 cut(s) 100, 122, 331, 544, 605, 688, 920, 1125
PleI GAGTC 4 cut(s) 365, 511, 722, 1087
PpsI GAGTC 4 cut(s) 365, 511, 722, 1087
Psp6I CCWGG 2 cut(s) 342, 606
PspGI CCWGG 2 cut(s) 342, 606
PspN4I GGNNCC 1 cut(s) 706
PspPI GGNCC 3 cut(s) 486, 644, 1014
PstI CTGCAG 1 cut(s) 547
PsuI RGATCY 1 cut(s) 704
PteI GCGCGC 1 cut(s) 805
PvuII CAGCTG 1 cut(s) 686
RsaI GTAC 4 cut(s) 116, 431, 938, 1110
RsaNI GTAC 4 cut(s) 115, 430, 937, 1109
RseI CAYNNNNRTG 4 cut(s) 63, 449, 1071, 1116
Rsr2I CGGWCCG 1 cut(s) 486
RsrII CGGWCCG 1 cut(s) 486
SacII CCGCGG 2 cut(s) 492, 922
SaqAI TTAA 2 cut(s) 93, 821
SatI GCNGC 8 cut(s) 99, 121, 330, 543, 604, 687, 919, 1124
Sau3AI GATC 5 cut(s) 181, 615, 704, 747, 912
Sau96I GGNCC 3 cut(s) 486, 644, 1014
SchI GAGTC 4 cut(s) 365, 512, 722, 1087
ScrFI CCNGG 2 cut(s) 344, 608
SfaNI GCATC 1 cut(s) 569
SfcI CTRYAG 1 cut(s) 543
SfiI GGCCNNNNNGGCC 1 cut(s) 344
Sfr303I CCGCGG 2 cut(s) 492, 922
SfuI TTCGAA 1 cut(s) 657
SgrBI CCGCGG 2 cut(s) 492, 922
SinI GGWCC 1 cut(s) 486
SmiMI CAYNNNNRTG 4 cut(s) 63, 449, 1071, 1116
SmlI CTYRAG 1 cut(s) 238
SmoI CTYRAG 1 cut(s) 238
SphI GCATGC 1 cut(s) 1163
Sse9I AATT 3 cut(s) 383, 815, 1150
SspMI CTAG 4 cut(s) 15, 419, 648, 1127
StyD4I CCNGG 2 cut(s) 342, 606
StyI CCWWGG 3 cut(s) 333, 835, 1017
TaaI ACNGT 7 cut(s) 88, 256, 701, 934, 949, 965, 1108
TaiI ACGT 2 cut(s) 632, 746
TaqI TCGA 2 cut(s) 599, 657
TasI AATT 3 cut(s) 383, 815, 1150
TatI WGTACW 2 cut(s) 936, 1108
TauI GCSGC 4 cut(s) 101, 123, 332, 921
TfiI GAWTC 2 cut(s) 735, 762
Tru1I TTAA 2 cut(s) 93, 821
Tru9I TTAA 2 cut(s) 93, 821
TscAI CASTG 2 cut(s) 91, 1170
TseFI GTSAC 3 cut(s) 205, 739, 1041
TseI GCWGC 4 cut(s) 542, 603, 686, 1123
Tsp45I GTSAC 3 cut(s) 205, 739, 1041
TspDTI ATGAA 3 cut(s) 15, 355, 1163
TspGWI ACGGA 2 cut(s) 102, 573
TspRI CASTG 2 cut(s) 91, 1170
VpaK11BI GGWCC 1 cut(s) 486
XceI RCATGY 2 cut(s) 1159, 1163
XmnI GAANNNNTTC 1 cut(s) 22
XspI CTAG 4 cut(s) 15, 419, 648, 1127
Zsp2I ATGCAT 2 cut(s) 562, 1161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.