MD02G1062900.v1.1

peroxiredoxin activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0010226
Physical Location & Seq
Reverse (-)
5033026 .. 5035272
2247 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1062900.v1.1.491

Sequence Viewer

Length: 489 bp
ATGGCTCCGATTGCAGTCGGCGATGTTATTCCGGACGGCACACTCTCCTACTTCGACGAGGAAGACAAGGTCCAATCCGTCAGCGTCCACTCCCTCGCCGCCGGCAAAAAAGTCATCCTCTTCGGCGTCCCCGGTGCCTTCACCCCCACTTGCAGTTTGAAGCATGTGCCTGGATTCATTGAGAAAGCAGATGAGCTTAAATCGAAGGGTGTTGAGAAAATTCTGTGTCTTAGCGTGAATGATCCCTTTGTGATGAAGGCTTGGTCAAAAACATACCCCGATAACAAAGATGTTCTTTTCCTTGCTGATGGCTCAGCGAAATACACCCGTGATCTCGGCCTGGAGCTAGACCTTTCAGAGAAAGGGCTCGGAATTCGTTCTAAGAGGTTTGCTCTCTTGATCGAAGACCTCAAGGTGAAGGCCGCAAATATCGAGAGTGGGGGAGAATTTACCATCTCCAGCGCCGATGACATCCTCAAGGCTCTCTGA

Protein Analysis

163

Amino Acids

17.45

Weight (kDa)

5.23

Isoelectric Point (pI)

37.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Redoxin PF08534 6 - 159 2.4e-34 Redoxin
AhpC-TSA PF00578 6 - 118 3.8e-12 AhpC/TSA family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010226)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G60740 AT1G65970 AT1G65980 AT1G65980
fragaria_vesca FvH4_1g05480
malus_domestica MD02G1062900.v1.1 MD10G1081800.v1.1 MD15G1353500.v1.1
prunus_persica Prupe.7G226400_v2.0.a1
pyrus_communis pycom02g04290 pycom15g17090
rosa_chinensis RchiOBHm_Chr2g0091161
rosa_laevigata RLG00000016187
rosa_multiflora Rmu_ssc0000457.1_g000001
rosa_roxburghii Rroxscaffold_2G00150480
rosa_rugosa Rorug02G0013900
rosa_samantha Rh2AG059800 Rh2BG058500 Rh2CG060300 Rh2DG059100
rosa_wichuraiana Rw2G005010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 134
AccIII TCCGGA 1 cut(s) 31
AciI CCGC 2 cut(s) 99, 423
AclWI GGATC 1 cut(s) 236
AcsI RAATTY 3 cut(s) 219, 372, 446
AcyI GRCGYC 1 cut(s) 126
AgsI TTSAA 1 cut(s) 160
AjnI CCWGG 2 cut(s) 169, 339
AluBI AGCT 2 cut(s) 196, 346
AluI AGCT 2 cut(s) 196, 346
AlwI GGATC 1 cut(s) 236
Aor13HI TCCGGA 1 cut(s) 31
AoxI GGCC 2 cut(s) 337, 420
ApoI RAATTY 3 cut(s) 219, 372, 446
Asp700I GAANNNNTTC 1 cut(s) 376
AspLEI GCGC 1 cut(s) 464
AspS9I GGNCC 1 cut(s) 70
AsuC2I CCSGG 1 cut(s) 132
AsuHPI GGTGA 2 cut(s) 133, 427
AvaII GGWCC 1 cut(s) 70
BanI GGYRCC 1 cut(s) 134
BanII GRGCYC 1 cut(s) 369
BbsI GAAGAC 2 cut(s) 69, 411
BccI CCATC 2 cut(s) 302, 461
BceAI ACGGC 1 cut(s) 52
BciT130I CCWGG 2 cut(s) 171, 341
BcnI CCSGG 1 cut(s) 132
BfaI CTAG 1 cut(s) 347
BfoI RGCGCY 1 cut(s) 465
BisI GCNGC 2 cut(s) 99, 423
BlpI GCTNAGC 1 cut(s) 313
BlsI GCNGC 2 cut(s) 100, 424
Bme1390I CCNGG 3 cut(s) 132, 171, 341
Bme18I GGWCC 1 cut(s) 70
BmgT120I GGNCC 1 cut(s) 70
BmiI GGNNCC 2 cut(s) 6, 136
BmrFI CCNGG 3 cut(s) 132, 171, 341
BpiI GAAGAC 2 cut(s) 69, 411
BplI GAGNNNNNCTC 2 cut(s) 376, 408
BpmI CTGGAG 2 cut(s) 362, 442
Bpu1102I GCTNAGC 1 cut(s) 313
BpuEI CTTGAG 2 cut(s) 395, 461
BpuMI CCSGG 1 cut(s) 132
BsaHI GRCGYC 1 cut(s) 126
BsaJI CCNNGG 1 cut(s) 130
BsaWI WCCGGW 1 cut(s) 31
Bse118I RCCGGY 1 cut(s) 101
BseAI TCCGGA 1 cut(s) 31
BseBI CCWGG 2 cut(s) 171, 341
BseDI CCNNGG 1 cut(s) 130
BseGI GGATG 2 cut(s) 114, 471
BseMII CTCAG 1 cut(s) 327
BshFI GGCC 2 cut(s) 339, 422
BshNI GGYRCC 1 cut(s) 134
BsiSI CCGG 3 cut(s) 32, 102, 132
BslFI GGGAC 1 cut(s) 113
BsmFI GGGAC 1 cut(s) 113
BsnI GGCC 2 cut(s) 339, 422
Bsp1286I GDGCHC 1 cut(s) 369
Bsp13I TCCGGA 1 cut(s) 31
Bsp143I GATC 3 cut(s) 241, 331, 399
Bsp1720I GCTNAGC 1 cut(s) 313
BspACI CCGC 2 cut(s) 99, 423
BspANI GGCC 2 cut(s) 339, 422
BspCNI CTCAG 1 cut(s) 326
BspEI TCCGGA 1 cut(s) 31
BspLI GGNNCC 2 cut(s) 6, 136
BspPI GGATC 1 cut(s) 236
BspT107I GGYRCC 1 cut(s) 134
BsrFI RCCGGY 1 cut(s) 101
BssAI RCCGGY 1 cut(s) 101
BssECI CCNNGG 1 cut(s) 130
BssMI GATC 3 cut(s) 241, 331, 399
BssNI GRCGYC 1 cut(s) 126
Bst2UI CCWGG 2 cut(s) 171, 341
Bst6I CTCTTC 1 cut(s) 125
BstACI GRCGYC 1 cut(s) 126
BstC8I GCNNGC 1 cut(s) 103
BstDEI CTNAG 3 cut(s) 230, 313, 381
BstF5I GGATG 2 cut(s) 114, 471
BstH2I RGCGCY 1 cut(s) 465
BstHHI GCGC 1 cut(s) 464
BstKTI GATC 3 cut(s) 244, 334, 402
BstMBI GATC 3 cut(s) 241, 331, 399
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstNI CCWGG 2 cut(s) 171, 341
BstNSI RCATGY 1 cut(s) 167
BstSCI CCNGG 3 cut(s) 130, 169, 339
BstV2I GAAGAC 2 cut(s) 69, 411
BsuRI GGCC 2 cut(s) 339, 422
BtgZI GCGATG 1 cut(s) 36
BtsCI GGATG 2 cut(s) 114, 471
Cac8I GCNNGC 1 cut(s) 103
CfoI GCGC 1 cut(s) 464
Cfr10I RCCGGY 1 cut(s) 101
Cfr13I GGNCC 1 cut(s) 70
CseI GACGC 2 cut(s) 73, 115
CviAII CATG 1 cut(s) 164
CviJI RGCY 9 cut(s) 5, 196, 260, 312, 339, 346, 367, 422, 482
CviKI_1 RGCY 9 cut(s) 5, 196, 260, 312, 339, 346, 367, 422, 482
DdeI CTNAG 3 cut(s) 230, 313, 381
DpnI GATC 3 cut(s) 243, 333, 401
DpnII GATC 3 cut(s) 241, 331, 399
Eam1104I CTCTTC 1 cut(s) 125
EarI CTCTTC 1 cut(s) 125
Eco24I GRGCYC 1 cut(s) 369
Eco47I GGWCC 1 cut(s) 70
EcoRI GAATTC 1 cut(s) 372
EcoRII CCWGG 2 cut(s) 169, 339
EcoT38I GRGCYC 1 cut(s) 369
FaeI CATG 1 cut(s) 167
FaiI YATR 2 cut(s) 165, 274
FalI AAGNNNNNCTT 2 cut(s) 279, 311
FaqI GGGAC 1 cut(s) 113
FatI CATG 1 cut(s) 163
Fnu4HI GCNGC 2 cut(s) 99, 423
FokI GGATG 2 cut(s) 101, 458
FriOI GRGCYC 1 cut(s) 369
Fsp4HI GCNGC 2 cut(s) 99, 423
FspBI CTAG 1 cut(s) 347
GlaI GCGC 1 cut(s) 463
GluI GCNGC 2 cut(s) 99, 423
GsuI CTGGAG 2 cut(s) 362, 442
HaeII RGCGCY 1 cut(s) 465
HaeIII GGCC 2 cut(s) 339, 422
HapII CCGG 3 cut(s) 32, 102, 132
HgaI GACGC 2 cut(s) 73, 115
HhaI GCGC 1 cut(s) 464
Hin1I GRCGYC 1 cut(s) 126
Hin1II CATG 1 cut(s) 167
Hin6I GCGC 1 cut(s) 462
HinP1I GCGC 1 cut(s) 462
HinfI GANTC 1 cut(s) 174
HpaII CCGG 3 cut(s) 32, 102, 132
HphI GGTGA 2 cut(s) 133, 427
Hpy166II GTNNAC 1 cut(s) 88
Hpy188I TCNGA 4 cut(s) 9, 358, 371, 488
Hpy188III TCNNGA 3 cut(s) 32, 397, 433
Hpy8I GTNNAC 1 cut(s) 88
Hpy99I CGWCG 1 cut(s) 59
HpyAV CCTTC 4 cut(s) 148, 199, 250, 412
HpyCH4V TGCA 2 cut(s) 14, 153
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 3 cut(s) 230, 313, 381
Hsp92I GRCGYC 1 cut(s) 126
Hsp92II CATG 1 cut(s) 167
HspAI GCGC 1 cut(s) 462
Kpn2I TCCGGA 1 cut(s) 31
KroI GCCGGC 1 cut(s) 101
KroNI GCCGGC 1 cut(s) 103
Kzo9I GATC 3 cut(s) 241, 331, 399
LmnI GCTCC 2 cut(s) 10, 343
LpnPI CCDG 8 cut(s) 45, 115, 145, 156, 183, 326, 353, 472
MaeI CTAG 1 cut(s) 347
MalI GATC 3 cut(s) 243, 333, 401
MboI GATC 3 cut(s) 241, 331, 399
MboII GAAGA 3 cut(s) 74, 112, 416
MhlI GDGCHC 1 cut(s) 369
MluCI AATT 3 cut(s) 219, 372, 446
MnlI CCTC 6 cut(s) 52, 104, 128, 378, 419, 485
MroI TCCGGA 1 cut(s) 31
MroNI GCCGGC 1 cut(s) 101
MroXI GAANNNNTTC 1 cut(s) 376
MseI TTAA 1 cut(s) 198
MspI CCGG 3 cut(s) 32, 102, 132
MspR9I CCNGG 3 cut(s) 132, 171, 341
MvaI CCWGG 2 cut(s) 171, 341
MwoI GCNNNNNNNGC 1 cut(s) 11
NaeI GCCGGC 1 cut(s) 103
NciI CCSGG 1 cut(s) 132
NdeII GATC 3 cut(s) 241, 331, 399
NgoMIV GCCGGC 1 cut(s) 101
NlaIII CATG 1 cut(s) 167
NlaIV GGNNCC 2 cut(s) 6, 136
NmeAIII GCCGAG 1 cut(s) 315
NspI RCATGY 1 cut(s) 167
PdiI GCCGGC 1 cut(s) 103
PdmI GAANNNNTTC 1 cut(s) 376
PfeI GAWTC 1 cut(s) 174
PflFI GACNNNGTC 1 cut(s) 68
PkrI GCNGC 2 cut(s) 100, 424
Psp6I CCWGG 2 cut(s) 169, 339
PspGI CCWGG 2 cut(s) 169, 339
PspN4I GGNNCC 2 cut(s) 6, 136
PspPI GGNCC 1 cut(s) 70
PsyI GACNNNGTC 1 cut(s) 68
SaqAI TTAA 1 cut(s) 198
SatI GCNGC 2 cut(s) 99, 423
Sau3AI GATC 3 cut(s) 241, 331, 399
Sau96I GGNCC 1 cut(s) 70
ScrFI CCNGG 3 cut(s) 132, 171, 341
SduI GDGCHC 1 cut(s) 369
SetI ASST 7 cut(s) 72, 198, 348, 354, 389, 411, 417
SinI GGWCC 1 cut(s) 70
SmlI CTYRAG 2 cut(s) 410, 476
SmoI CTYRAG 2 cut(s) 410, 476
Sse9I AATT 3 cut(s) 219, 372, 446
SsiI CCGC 2 cut(s) 99, 423
SspMI CTAG 1 cut(s) 347
StyD4I CCNGG 3 cut(s) 130, 169, 339
TaqI TCGA 4 cut(s) 54, 203, 402, 432
TasI AATT 3 cut(s) 219, 372, 446
TauI GCSGC 2 cut(s) 101, 425
TfiI GAWTC 1 cut(s) 174
Tru1I TTAA 1 cut(s) 198
Tru9I TTAA 1 cut(s) 198
TspDTI ATGAA 2 cut(s) 166, 269
TspGWI ACGGA 1 cut(s) 67
Tth111I GACNNNGTC 1 cut(s) 68
VpaK11BI GGWCC 1 cut(s) 70
XapI RAATTY 3 cut(s) 219, 372, 446
XceI RCATGY 1 cut(s) 167
XmnI GAANNNNTTC 1 cut(s) 376
XspI CTAG 1 cut(s) 347
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.