pycom02g04290

peroxiredoxin activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0010226
Physical Location & Seq
Forward (+)
2824084 .. 2827024
2941 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g04290.4

Sequence Viewer

Length: 735 bp
ATGCGTTCCAGCAAGCACAGCTCAAGTCATGCTTATCTTCGCCTCACTCGGTATCATGTCAGTCAGGATCCGGTGGCATCACACCGTGCTCCTTGGCCTCTGGTGCCGATCAACGGGACAATCCAGACAACCCGAAGAACGAAGGGCGCTTGCGGCCGGAGCTTCTTCGGTCGGTATTATGCTTCAGTTAGAGTGTCAGTCATGCTTGAAGCGACAGTCATAGTTTATATTCAGCAGATCAAAGCTATGGCTCCGATTGCAGTCGGCGATGTTATTCCGGACGGCACTCTCGCCTACTTCGACGAGGAGGACAAGGTCCAATCCGTCAGCGTCCACTCCCTCGCCGCCGGCAAAAAAGTCATCCTCTTCGGCGTGCCCGGTGCCTTCACCCCCACTTGCAGTTTGAAGCATGTGCCTGGATTCATTGAGAAAGCAGACGAGCTTAAATCGAAGGGTGTTGAGAAAATTCTCTGTCTTAGTGTGAATGATCCCTTTGTGATGAAGGCTTGGTCAAAAACATACCCCGAGAACAAAGACGTTCTTTTTCTTGCTGATGGCTCAGCGAAATACACCCGTGATCTTGGCCTGGAGCTAGACCTTTCAGAGAAAGGGCTCGGAATTCGTTCTAAGAGGTTTGCTCTCTTGATCGAAGACCTCAAGGTGAAGGCCGCAAATATCGAGAGTGGGGGAGAATTTACCATCTCCAGTGCCGAAGACATCCTCAAGGCTCTCTGA

Protein Analysis

245

Amino Acids

26.73

Weight (kDa)

9.12

Isoelectric Point (pI)

44.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010226)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G60740 AT1G65970 AT1G65980 AT1G65980
fragaria_vesca FvH4_1g05480
malus_domestica MD02G1062900.v1.1 MD10G1081800.v1.1 MD15G1353500.v1.1
prunus_persica Prupe.7G226400_v2.0.a1
pyrus_communis pycom02g04290 pycom15g17090
rosa_chinensis RchiOBHm_Chr2g0091161
rosa_laevigata RLG00000016187
rosa_multiflora Rmu_ssc0000457.1_g000001
rosa_roxburghii Rroxscaffold_2G00150480
rosa_rugosa Rorug02G0013900
rosa_samantha Rh2AG059800 Rh2BG058500 Rh2CG060300 Rh2DG059100
rosa_wichuraiana Rw2G005010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 103, 380
AccIII TCCGGA 1 cut(s) 277
AciI CCGC 3 cut(s) 153, 345, 669
AclWI GGATC 3 cut(s) 62, 75, 482
AcoI YGGCCR 1 cut(s) 154
AcsI RAATTY 3 cut(s) 465, 618, 692
AcuI CTGAAG 1 cut(s) 168
AdeI CACNNNGTG 1 cut(s) 86
AfiI CCNNNNNNNGG 1 cut(s) 113
AgsI TTSAA 2 cut(s) 209, 406
AjnI CCWGG 2 cut(s) 415, 585
AluBI AGCT 5 cut(s) 21, 162, 245, 442, 592
AluI AGCT 5 cut(s) 21, 162, 245, 442, 592
Alw21I GWGCWC 1 cut(s) 91
AlwI GGATC 3 cut(s) 62, 75, 482
Ama87I CYCGRG 1 cut(s) 524
Aor13HI TCCGGA 1 cut(s) 277
AoxI GGCC 4 cut(s) 95, 154, 583, 666
ApoI RAATTY 3 cut(s) 465, 618, 692
Asp700I GAANNNNTTC 1 cut(s) 622
AspLEI GCGC 1 cut(s) 149
AspS9I GGNCC 1 cut(s) 316
AsuC2I CCSGG 1 cut(s) 378
AsuHPI GGTGA 2 cut(s) 379, 673
AvaI CYCGRG 1 cut(s) 524
AvaII GGWCC 1 cut(s) 316
BaeGI GKGCMC 1 cut(s) 378
BamHI GGATCC 1 cut(s) 67
BanI GGYRCC 2 cut(s) 103, 380
BanII GRGCYC 1 cut(s) 615
BbsI GAAGAC 2 cut(s) 657, 720
Bbv12I GWGCWC 1 cut(s) 91
BccI CCATC 2 cut(s) 548, 707
BceAI ACGGC 1 cut(s) 298
BciT130I CCWGG 2 cut(s) 417, 587
BcnI CCSGG 1 cut(s) 378
BfaI CTAG 1 cut(s) 593
BfoI RGCGCY 1 cut(s) 150
BisI GCNGC 3 cut(s) 154, 345, 669
BlpI GCTNAGC 1 cut(s) 559
BlsI GCNGC 3 cut(s) 155, 346, 670
Bme1390I CCNGG 3 cut(s) 378, 417, 587
Bme18I GGWCC 1 cut(s) 316
BmeT110I CYCGRG 1 cut(s) 524
BmgT120I GGNCC 1 cut(s) 316
BmiI GGNNCC 4 cut(s) 69, 105, 252, 382
BmrFI CCNGG 3 cut(s) 378, 417, 587
BmsI GCATC 1 cut(s) 86
BpiI GAAGAC 2 cut(s) 657, 720
BplI GAGNNNNNCTC 2 cut(s) 622, 654
BpmI CTGGAG 2 cut(s) 608, 688
Bpu1102I GCTNAGC 1 cut(s) 559
BpuEI CTTGAG 3 cut(s) 7, 641, 707
BpuMI CCSGG 1 cut(s) 378
BsaJI CCNNGG 1 cut(s) 92
BsaWI WCCGGW 2 cut(s) 70, 277
Bsc4I CCNNNNNNNGG 1 cut(s) 113
Bse118I RCCGGY 1 cut(s) 347
Bse1I ACTGG 1 cut(s) 705
BseAI TCCGGA 1 cut(s) 277
BseBI CCWGG 2 cut(s) 417, 587
BseDI CCNNGG 1 cut(s) 92
BseGI GGATG 2 cut(s) 360, 717
BseLI CCNNNNNNNGG 1 cut(s) 113
BseMII CTCAG 1 cut(s) 573
BseNI ACTGG 1 cut(s) 705
BseRI GAGGAG 1 cut(s) 320
BseSI GKGCMC 1 cut(s) 378
BseX3I CGGCCG 1 cut(s) 154
Bsh1285I CGRYCG 2 cut(s) 157, 172
BshFI GGCC 4 cut(s) 97, 156, 585, 668
BshNI GGYRCC 2 cut(s) 103, 380
BsiEI CGRYCG 2 cut(s) 157, 172
BsiHKAI GWGCWC 1 cut(s) 91
BsiHKCI CYCGRG 1 cut(s) 524
BsiSI CCGG 5 cut(s) 71, 157, 278, 348, 378
BslFI GGGAC 1 cut(s) 130
BslI CCNNNNNNNGG 1 cut(s) 113
BsmFI GGGAC 1 cut(s) 130
BsnI GGCC 4 cut(s) 97, 156, 585, 668
BsoBI CYCGRG 1 cut(s) 524
Bsp1286I GDGCHC 3 cut(s) 91, 378, 615
Bsp13I TCCGGA 1 cut(s) 277
Bsp143I GATC 6 cut(s) 67, 108, 237, 487, 577, 645
Bsp1720I GCTNAGC 1 cut(s) 559
BspACI CCGC 3 cut(s) 153, 345, 669
BspANI GGCC 4 cut(s) 97, 156, 585, 668
BspCNI CTCAG 1 cut(s) 572
BspEI TCCGGA 1 cut(s) 277
BspLI GGNNCC 4 cut(s) 69, 105, 252, 382
BspPI GGATC 3 cut(s) 62, 75, 482
BspT107I GGYRCC 2 cut(s) 103, 380
BsrFI RCCGGY 1 cut(s) 347
BsrI ACTGG 1 cut(s) 705
BssAI RCCGGY 1 cut(s) 347
BssECI CCNNGG 1 cut(s) 92
BssMI GATC 6 cut(s) 67, 108, 237, 487, 577, 645
BssT1I CCWWGG 1 cut(s) 92
Bst2UI CCWGG 2 cut(s) 417, 587
Bst4CI ACNGT 2 cut(s) 86, 217
Bst6I CTCTTC 1 cut(s) 371
BstC8I GCNNGC 4 cut(s) 14, 151, 349, 374
BstDEI CTNAG 3 cut(s) 476, 559, 627
BstF5I GGATG 2 cut(s) 360, 717
BstH2I RGCGCY 1 cut(s) 150
BstHHI GCGC 1 cut(s) 149
BstKTI GATC 6 cut(s) 70, 111, 240, 490, 580, 648
BstMBI GATC 6 cut(s) 67, 108, 237, 487, 577, 645
BstMCI CGRYCG 2 cut(s) 157, 172
BstMWI GCNNNNNNNGC 5 cut(s) 18, 103, 153, 159, 257
BstNI CCWGG 2 cut(s) 417, 587
BstNSI RCATGY 1 cut(s) 413
BstSCI CCNGG 3 cut(s) 376, 415, 585
BstSLI GKGCMC 1 cut(s) 378
BstV2I GAAGAC 2 cut(s) 657, 720
BstX2I RGATCY 1 cut(s) 67
BstYI RGATCY 1 cut(s) 67
BstZI CGGCCG 1 cut(s) 154
BsuRI GGCC 4 cut(s) 97, 156, 585, 668
BtgZI GCGATG 1 cut(s) 282
BtsCI GGATG 2 cut(s) 360, 717
BtsIMutI CAGTG 1 cut(s) 712
Cac8I GCNNGC 4 cut(s) 14, 151, 349, 374
CfoI GCGC 1 cut(s) 149
Cfr10I RCCGGY 1 cut(s) 347
Cfr13I GGNCC 1 cut(s) 316
CseI GACGC 1 cut(s) 319
CviAII CATG 4 cut(s) 29, 56, 202, 410
DdeI CTNAG 3 cut(s) 476, 559, 627
DpnI GATC 6 cut(s) 69, 110, 239, 489, 579, 647
DpnII GATC 6 cut(s) 67, 108, 237, 487, 577, 645
DraIII CACNNNGTG 1 cut(s) 86
EaeI YGGCCR 1 cut(s) 154
EagI CGGCCG 1 cut(s) 154
Eam1104I CTCTTC 1 cut(s) 371
EarI CTCTTC 1 cut(s) 371
EclXI CGGCCG 1 cut(s) 154
Eco130I CCWWGG 1 cut(s) 92
Eco24I GRGCYC 1 cut(s) 615
Eco47I GGWCC 1 cut(s) 316
Eco52I CGGCCG 1 cut(s) 154
Eco57I CTGAAG 1 cut(s) 168
Eco88I CYCGRG 1 cut(s) 524
EcoRI GAATTC 1 cut(s) 618
EcoRII CCWGG 2 cut(s) 415, 585
EcoT14I CCWWGG 1 cut(s) 92
EcoT38I GRGCYC 1 cut(s) 615
ErhI CCWWGG 1 cut(s) 92
FaeI CATG 4 cut(s) 32, 59, 205, 413
FaiI YATR 9 cut(s) 30, 57, 180, 203, 221, 228, 248, 411, 520
FalI AAGNNNNNCTT 4 cut(s) 16, 48, 525, 557
FaqI GGGAC 1 cut(s) 130
FatI CATG 4 cut(s) 28, 55, 201, 409
Fnu4HI GCNGC 3 cut(s) 154, 345, 669
FokI GGATG 2 cut(s) 347, 704
FriOI GRGCYC 1 cut(s) 615
Fsp4HI GCNGC 3 cut(s) 154, 345, 669
FspBI CTAG 1 cut(s) 593
GlaI GCGC 1 cut(s) 148
GluI GCNGC 3 cut(s) 154, 345, 669
GsuI CTGGAG 2 cut(s) 608, 688
HaeII RGCGCY 1 cut(s) 150
HaeIII GGCC 4 cut(s) 97, 156, 585, 668
HapII CCGG 5 cut(s) 71, 157, 278, 348, 378
HgaI GACGC 1 cut(s) 319
HhaI GCGC 1 cut(s) 149
Hin1II CATG 4 cut(s) 32, 59, 205, 413
Hin6I GCGC 1 cut(s) 147
HinP1I GCGC 1 cut(s) 147
HinfI GANTC 1 cut(s) 420
HpaII CCGG 5 cut(s) 71, 157, 278, 348, 378
HphI GGTGA 2 cut(s) 379, 673
Hpy166II GTNNAC 1 cut(s) 334
Hpy188I TCNGA 4 cut(s) 255, 604, 617, 734
Hpy188III TCNNGA 5 cut(s) 65, 124, 278, 643, 679
Hpy8I GTNNAC 1 cut(s) 334
Hpy99I CGWCG 1 cut(s) 305
HpyAV CCTTC 5 cut(s) 136, 394, 445, 496, 658
HpyCH4III ACNGT 2 cut(s) 86, 217
HpyCH4IV ACGT 1 cut(s) 537
HpyCH4V TGCA 2 cut(s) 260, 399
HpyF10VI GCNNNNNNNGC 5 cut(s) 18, 103, 153, 159, 257
HpyF3I CTNAG 3 cut(s) 476, 559, 627
HpySE526I ACGT 1 cut(s) 537
Hsp92II CATG 4 cut(s) 32, 59, 205, 413
HspAI GCGC 1 cut(s) 147
Kpn2I TCCGGA 1 cut(s) 277
KroI GCCGGC 1 cut(s) 347
KroNI GCCGGC 1 cut(s) 349
Kzo9I GATC 6 cut(s) 67, 108, 237, 487, 577, 645
LmnI GCTCC 4 cut(s) 94, 159, 256, 589
LweI GCATC 1 cut(s) 86
MaeI CTAG 1 cut(s) 593
MaeII ACGT 1 cut(s) 537
MalI GATC 6 cut(s) 69, 110, 239, 489, 579, 647
MboI GATC 6 cut(s) 67, 108, 237, 487, 577, 645
MboII GAAGA 6 cut(s) 29, 147, 157, 358, 662, 725
MflI RGATCY 1 cut(s) 67
MhlI GDGCHC 3 cut(s) 91, 378, 615
MluCI AATT 3 cut(s) 465, 618, 692
MnlI CCTC 9 cut(s) 53, 108, 298, 301, 350, 374, 624, 665, 731
MroI TCCGGA 1 cut(s) 277
MroNI GCCGGC 1 cut(s) 347
MroXI GAANNNNTTC 1 cut(s) 622
MseI TTAA 1 cut(s) 444
MspI CCGG 5 cut(s) 71, 157, 278, 348, 378
MspR9I CCNGG 3 cut(s) 378, 417, 587
MvaI CCWGG 2 cut(s) 417, 587
MwoI GCNNNNNNNGC 5 cut(s) 18, 103, 153, 159, 257
NaeI GCCGGC 1 cut(s) 349
NciI CCSGG 1 cut(s) 378
NdeII GATC 6 cut(s) 67, 108, 237, 487, 577, 645
NgoMIV GCCGGC 1 cut(s) 347
NlaIII CATG 4 cut(s) 32, 59, 205, 413
NlaIV GGNNCC 4 cut(s) 69, 105, 252, 382
NspI RCATGY 1 cut(s) 413
PcsI WCGNNNNNNNCGW 1 cut(s) 297
PdiI GCCGGC 1 cut(s) 349
PdmI GAANNNNTTC 1 cut(s) 622
PfeI GAWTC 1 cut(s) 420
PflFI GACNNNGTC 1 cut(s) 314
PkrI GCNGC 3 cut(s) 155, 346, 670
Psp6I CCWGG 2 cut(s) 415, 585
PspGI CCWGG 2 cut(s) 415, 585
PspN4I GGNNCC 4 cut(s) 69, 105, 252, 382
PspPI GGNCC 1 cut(s) 316
PsuI RGATCY 1 cut(s) 67
PsyI GACNNNGTC 1 cut(s) 314
SaqAI TTAA 1 cut(s) 444
SatI GCNGC 3 cut(s) 154, 345, 669
Sau3AI GATC 6 cut(s) 67, 108, 237, 487, 577, 645
Sau96I GGNCC 1 cut(s) 316
ScrFI CCNGG 3 cut(s) 378, 417, 587
SduI GDGCHC 3 cut(s) 91, 378, 615
SfaNI GCATC 1 cut(s) 86
SinI GGWCC 1 cut(s) 316
SmlI CTYRAG 3 cut(s) 22, 656, 722
SmoI CTYRAG 3 cut(s) 22, 656, 722
Sse9I AATT 3 cut(s) 465, 618, 692
SsiI CCGC 3 cut(s) 153, 345, 669
SspMI CTAG 1 cut(s) 593
StyD4I CCNGG 3 cut(s) 376, 415, 585
StyI CCWWGG 1 cut(s) 92
TaaI ACNGT 2 cut(s) 86, 217
TaiI ACGT 1 cut(s) 540
TaqI TCGA 4 cut(s) 300, 449, 648, 678
TaqII GACCGA 1 cut(s) 158
TasI AATT 3 cut(s) 465, 618, 692
TauI GCSGC 3 cut(s) 156, 347, 671
TfiI GAWTC 1 cut(s) 420
Tru1I TTAA 1 cut(s) 444
Tru9I TTAA 1 cut(s) 444
TscAI CASTG 1 cut(s) 712
TspDTI ATGAA 2 cut(s) 412, 515
TspGWI ACGGA 1 cut(s) 313
TspRI CASTG 1 cut(s) 712
Tth111I GACNNNGTC 1 cut(s) 314
VpaK11BI GGWCC 1 cut(s) 316
XapI RAATTY 3 cut(s) 465, 618, 692
XceI RCATGY 1 cut(s) 413
XmnI GAANNNNTTC 1 cut(s) 622
XspI CTAG 1 cut(s) 593
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.