RLG00000016187

peroxiredoxin activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0010226
Physical Location & Seq
Reverse (-)
4573479 .. 4574630
1152 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000016187

Sequence Viewer

Length: 489 bp
ATGGCCCCGATTGCCGTCGGCGATTCAATTCCGGACGGTACTCTGTCCTACTTCGACGACCAAGACCAGATGCAAACGGTCAACATTCACTCCCTCGCCGCCGGCAAGAAGATCATCCTCTTCGGCGTCCCCGGCGCCTTCACCCCCACTTGCAGTTTGAAGCATGTTCCTGGATATATTGAGAAAGCAGATGAGCTGAAATCCAAGGGTGTTGACAAGATTATCTGCCTCAGTGTGAATGACCCCTTTGTGATGAAGGCATGGGCCAAATCCTACCCTGAGAACAAGCATGTCCTTTTTGTTGCTGATGGCTCAGCAAAATACACCCATGCCCTTGGTCTTGAGCTTGACCTCTCGGAGAAAGGACTTGGAACTCGTTCCAGGAGGTTTGCTCTCTTGGTCGATGACCTCAAGGTGAAGGCTGCAAATGTTGAAGCTGGAGGAGAGTTCACCGTCTCTAGTGCTGATGAAATCCTCAAGGCTCTTTGA

Protein Analysis

163

Amino Acids

17.41

Weight (kDa)

5.78

Isoelectric Point (pI)

28.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Redoxin PF08534 6 - 159 1.5e-36 Redoxin
AhpC-TSA PF00578 6 - 123 2e-11 AhpC/TSA family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010226)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G60740 AT1G65970 AT1G65980 AT1G65980
fragaria_vesca FvH4_1g05480
malus_domestica MD02G1062900.v1.1 MD10G1081800.v1.1 MD15G1353500.v1.1
prunus_persica Prupe.7G226400_v2.0.a1
pyrus_communis pycom02g04290 pycom15g17090
rosa_chinensis RchiOBHm_Chr2g0091161
rosa_laevigata RLG00000016187
rosa_multiflora Rmu_ssc0000457.1_g000001
rosa_roxburghii Rroxscaffold_2G00150480
rosa_rugosa Rorug02G0013900
rosa_samantha Rh2AG059800 Rh2BG058500 Rh2CG060300 Rh2DG059100
rosa_wichuraiana Rw2G005010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 134
AccIII TCCGGA 1 cut(s) 31
AciI CCGC 1 cut(s) 99
AcyI GRCGYC 2 cut(s) 126, 135
AfaI GTAC 1 cut(s) 40
AgsI TTSAA 3 cut(s) 27, 160, 434
AjnI CCWGG 2 cut(s) 169, 380
AluBI AGCT 3 cut(s) 196, 346, 437
AluI AGCT 3 cut(s) 196, 346, 437
Alw26I GTCTC 1 cut(s) 460
Aor13HI TCCGGA 1 cut(s) 31
AoxI GGCC 2 cut(s) 3, 264
ApeKI GCWGC 1 cut(s) 422
Asp700I GAANNNNTTC 1 cut(s) 376
AspLEI GCGC 1 cut(s) 137
AspS9I GGNCC 2 cut(s) 4, 264
AsuC2I CCSGG 1 cut(s) 132
AsuHPI GGTGA 3 cut(s) 133, 427, 442
BanI GGYRCC 1 cut(s) 134
BbvI GCAGC 1 cut(s) 409
BccI CCATC 1 cut(s) 302
BciT130I CCWGG 2 cut(s) 171, 382
BcnI CCSGG 1 cut(s) 132
BcoDI GTCTC 1 cut(s) 460
BfaI CTAG 1 cut(s) 459
BfoI RGCGCY 1 cut(s) 138
BisI GCNGC 2 cut(s) 99, 423
BlpI GCTNAGC 1 cut(s) 313
BlsI GCNGC 2 cut(s) 100, 424
Bme1390I CCNGG 3 cut(s) 132, 171, 382
BmgT120I GGNCC 2 cut(s) 4, 264
BmiI GGNNCC 2 cut(s) 6, 136
BmrFI CCNGG 3 cut(s) 132, 171, 382
BmsI GCATC 1 cut(s) 60
BplI GAGNNNNNCTC 2 cut(s) 376, 408
BpmI CTGGAG 1 cut(s) 459
Bpu1102I GCTNAGC 1 cut(s) 313
BpuEI CTTGAG 3 cut(s) 362, 395, 461
BpuMI CCSGG 1 cut(s) 132
BsaHI GRCGYC 2 cut(s) 126, 135
BsaJI CCNNGG 3 cut(s) 130, 204, 334
BsaWI WCCGGW 1 cut(s) 31
BsaXI ACNNNNNCTCC 2 cut(s) 74, 104
Bse118I RCCGGY 1 cut(s) 101
BseAI TCCGGA 1 cut(s) 31
BseBI CCWGG 2 cut(s) 171, 382
BseDI CCNNGG 3 cut(s) 130, 204, 334
BseGI GGATG 1 cut(s) 114
BseMII CTCAG 3 cut(s) 244, 270, 327
BseRI GAGGAG 1 cut(s) 456
BseXI GCAGC 1 cut(s) 409
BshFI GGCC 2 cut(s) 5, 266
BshNI GGYRCC 1 cut(s) 134
BsiSI CCGG 3 cut(s) 32, 102, 132
BslFI GGGAC 1 cut(s) 113
BsmAI GTCTC 1 cut(s) 460
BsmBI CGTCTC 1 cut(s) 460
BsmFI GGGAC 1 cut(s) 113
BsnI GGCC 2 cut(s) 5, 266
Bsp13I TCCGGA 1 cut(s) 31
Bsp143I GATC 1 cut(s) 111
Bsp1720I GCTNAGC 1 cut(s) 313
BspACI CCGC 1 cut(s) 99
BspANI GGCC 2 cut(s) 5, 266
BspCNI CTCAG 3 cut(s) 243, 271, 326
BspEI TCCGGA 1 cut(s) 31
BspLI GGNNCC 2 cut(s) 6, 136
BspT107I GGYRCC 1 cut(s) 134
BsrFI RCCGGY 1 cut(s) 101
BssAI RCCGGY 1 cut(s) 101
BssECI CCNNGG 3 cut(s) 130, 204, 334
BssMI GATC 1 cut(s) 111
BssNI GRCGYC 2 cut(s) 126, 135
BssT1I CCWWGG 2 cut(s) 204, 334
Bst2UI CCWGG 2 cut(s) 171, 382
Bst4CI ACNGT 3 cut(s) 38, 79, 454
Bst6I CTCTTC 1 cut(s) 125
BstACI GRCGYC 2 cut(s) 126, 135
BstC8I GCNNGC 1 cut(s) 103
BstDEI CTNAG 3 cut(s) 230, 279, 313
BstF5I GGATG 1 cut(s) 114
BstH2I RGCGCY 1 cut(s) 138
BstHHI GCGC 1 cut(s) 137
BstKTI GATC 1 cut(s) 114
BstMAI GTCTC 1 cut(s) 460
BstMBI GATC 1 cut(s) 111
BstMWI GCNNNNNNNGC 2 cut(s) 11, 132
BstNI CCWGG 2 cut(s) 171, 382
BstNSI RCATGY 2 cut(s) 167, 293
BstSCI CCNGG 3 cut(s) 130, 169, 380
BstV1I GCAGC 1 cut(s) 409
BstXI CCANNNNNNTGG 1 cut(s) 335
BsuRI GGCC 2 cut(s) 5, 266
BtsCI GGATG 1 cut(s) 114
BtsIMutI CAGTG 1 cut(s) 238
Cac8I GCNNGC 1 cut(s) 103
CfoI GCGC 1 cut(s) 137
Cfr10I RCCGGY 1 cut(s) 101
Cfr13I GGNCC 2 cut(s) 4, 264
CseI GACGC 1 cut(s) 115
Csp6I GTAC 1 cut(s) 39
CviAII CATG 4 cut(s) 164, 261, 290, 329
CviJI RGCY 8 cut(s) 5, 196, 266, 312, 346, 422, 437, 482
CviKI_1 RGCY 8 cut(s) 5, 196, 266, 312, 346, 422, 437, 482
CviQI GTAC 1 cut(s) 39
DdeI CTNAG 3 cut(s) 230, 279, 313
DinI GGCGCC 1 cut(s) 136
DpnI GATC 1 cut(s) 113
DpnII GATC 1 cut(s) 111
Eam1104I CTCTTC 1 cut(s) 125
EarI CTCTTC 1 cut(s) 125
Eco130I CCWWGG 2 cut(s) 204, 334
EcoRII CCWGG 2 cut(s) 169, 380
EcoT14I CCWWGG 2 cut(s) 204, 334
EgeI GGCGCC 1 cut(s) 136
EheI GGCGCC 1 cut(s) 136
ErhI CCWWGG 2 cut(s) 204, 334
Esp3I CGTCTC 1 cut(s) 460
FaeI CATG 4 cut(s) 167, 264, 293, 332
FaiI YATR 5 cut(s) 165, 177, 262, 291, 330
FaqI GGGAC 1 cut(s) 113
FatI CATG 4 cut(s) 163, 260, 289, 328
Fnu4HI GCNGC 2 cut(s) 99, 423
FokI GGATG 1 cut(s) 101
Fsp4HI GCNGC 2 cut(s) 99, 423
FspBI CTAG 1 cut(s) 459
GlaI GCGC 1 cut(s) 136
GluI GCNGC 2 cut(s) 99, 423
GsuI CTGGAG 1 cut(s) 459
HaeII RGCGCY 1 cut(s) 138
HaeIII GGCC 2 cut(s) 5, 266
HapII CCGG 3 cut(s) 32, 102, 132
HgaI GACGC 1 cut(s) 115
HhaI GCGC 1 cut(s) 137
Hin1I GRCGYC 2 cut(s) 126, 135
Hin1II CATG 4 cut(s) 167, 264, 293, 332
Hin6I GCGC 1 cut(s) 135
HinP1I GCGC 1 cut(s) 135
HincII GTYRAC 2 cut(s) 82, 214
HindII GTYRAC 2 cut(s) 82, 214
HinfI GANTC 1 cut(s) 23
HpaII CCGG 3 cut(s) 32, 102, 132
HphI GGTGA 3 cut(s) 133, 427, 442
Hpy166II GTNNAC 3 cut(s) 82, 214, 450
Hpy188I TCNGA 1 cut(s) 358
Hpy188III TCNNGA 2 cut(s) 32, 341
Hpy8I GTNNAC 3 cut(s) 82, 214, 450
Hpy99I CGWCG 2 cut(s) 20, 59
HpyAV CCTTC 3 cut(s) 148, 250, 412
HpyCH4III ACNGT 3 cut(s) 38, 79, 454
HpyCH4V TGCA 3 cut(s) 73, 153, 425
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 132
HpyF3I CTNAG 3 cut(s) 230, 279, 313
Hsp92I GRCGYC 2 cut(s) 126, 135
Hsp92II CATG 4 cut(s) 167, 264, 293, 332
HspAI GCGC 1 cut(s) 135
KasI GGCGCC 1 cut(s) 134
Kpn2I TCCGGA 1 cut(s) 31
KroI GCCGGC 1 cut(s) 101
KroNI GCCGGC 1 cut(s) 103
Kzo9I GATC 1 cut(s) 111
Lsp1109I GCAGC 1 cut(s) 409
LweI GCATC 1 cut(s) 60
MaeI CTAG 1 cut(s) 459
MalI GATC 1 cut(s) 113
MboI GATC 1 cut(s) 111
MboII GAAGA 2 cut(s) 112, 121
MluCI AATT 1 cut(s) 27
Mly113I GGCGCC 1 cut(s) 135
MnlI CCTC 8 cut(s) 104, 128, 239, 362, 378, 419, 434, 485
MroI TCCGGA 1 cut(s) 31
MroNI GCCGGC 1 cut(s) 101
MroXI GAANNNNTTC 1 cut(s) 376
MspI CCGG 3 cut(s) 32, 102, 132
MspR9I CCNGG 3 cut(s) 132, 171, 382
MvaI CCWGG 2 cut(s) 171, 382
MwoI GCNNNNNNNGC 2 cut(s) 11, 132
NaeI GCCGGC 1 cut(s) 103
NarI GGCGCC 1 cut(s) 135
NciI CCSGG 1 cut(s) 132
NdeII GATC 1 cut(s) 111
NgoMIV GCCGGC 1 cut(s) 101
NlaIII CATG 4 cut(s) 167, 264, 293, 332
NlaIV GGNNCC 2 cut(s) 6, 136
NspI RCATGY 2 cut(s) 167, 293
PdiI GCCGGC 1 cut(s) 103
PdmI GAANNNNTTC 1 cut(s) 376
PfeI GAWTC 1 cut(s) 23
PfoI TCCNGGA 2 cut(s) 169, 380
PkrI GCNGC 2 cut(s) 100, 424
PluTI GGCGCC 1 cut(s) 138
Psp6I CCWGG 2 cut(s) 169, 380
PspGI CCWGG 2 cut(s) 169, 380
PspN4I GGNNCC 2 cut(s) 6, 136
PspPI GGNCC 2 cut(s) 4, 264
RsaI GTAC 1 cut(s) 40
RsaNI GTAC 1 cut(s) 39
SatI GCNGC 2 cut(s) 99, 423
Sau3AI GATC 1 cut(s) 111
Sau96I GGNCC 2 cut(s) 4, 264
ScrFI CCNGG 3 cut(s) 132, 171, 382
SetI ASST 7 cut(s) 198, 348, 354, 389, 411, 417, 439
SfaNI GCATC 1 cut(s) 60
SfoI GGCGCC 1 cut(s) 136
SmlI CTYRAG 3 cut(s) 341, 410, 476
SmoI CTYRAG 3 cut(s) 341, 410, 476
Sse9I AATT 1 cut(s) 27
SsiI CCGC 1 cut(s) 99
SspDI GGCGCC 1 cut(s) 134
SspMI CTAG 1 cut(s) 459
StyD4I CCNGG 3 cut(s) 130, 169, 380
StyI CCWWGG 2 cut(s) 204, 334
TaaI ACNGT 3 cut(s) 38, 79, 454
TaqI TCGA 2 cut(s) 54, 402
TasI AATT 1 cut(s) 27
TauI GCSGC 1 cut(s) 101
TfiI GAWTC 1 cut(s) 23
TscAI CASTG 1 cut(s) 238
TseI GCWGC 1 cut(s) 422
TspDTI ATGAA 2 cut(s) 269, 483
TspRI CASTG 1 cut(s) 238
XceI RCATGY 2 cut(s) 167, 293
XmnI GAANNNNTTC 1 cut(s) 376
XspI CTAG 1 cut(s) 459
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.