Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010226

Physical Location & Seq

Genomic Coordinates Reverse (-)

24557372 .. 24558322

Gene Structure 951 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G65970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGGCTCCAATTACTGTCGGCGATGTTGTACCAGACGGAACTATCTCTTTCTTCGATGAAAATGATCAGCTTCAGACCGTCTCCGTTCACTCTATCGCCGCCGGTAAAAAAGTCATTCTCTTTGGTGTTCCTGGTGCTTTCACTCCCACATGCAGTATGAGCCATGTGCCTGGATTCATTGGGAAAGCAGAGGAGCTGAAGTCAAAGGGTATTGATGAGATCATTTGCTTTAGTGTGAATGATCCATTTGTGATGAAGGCATGGGGAAAAACATATCCAGAGAACAAGCATGTGAAGTTTGTAGCAGATGGGTCTGGAGAATACACGCATCTTCTTGGACTTGAGCTTGACCTTAAGGACAAGGGTCTTGGTATTAGGTCAAGGAGATTCGCTTTGTTGCTTGATAACCTTAAGGTGACTGTAGCCAATGTTGAATCTGGTGGCGAGTTCACGGTTTCCAGCGCAGAGGATATTCTCAAGGCTCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0008150 GO:0009507 GO:0009536 GO:0010035 GO:0010038 GO:0016020 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050896 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04214 map04214

Pfam Domains

Protein Families

Redoxin

Protein Analysis

162

Amino Acids

17.41

Weight (kDa)

5.33

Isoelectric Point (pI)

30.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Redoxin	PF08534	6 - 159	7.7e-32	Redoxin
AhpC-TSA	PF00578	6 - 118	3.1e-10	AhpC/TSA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0010226)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60740 AT1G65970 AT1G65980 AT1G65980
fragaria_vesca	FvH4_1g05480
malus_domestica	MD02G1062900.v1.1 MD10G1081800.v1.1 MD15G1353500.v1.1
prunus_persica	Prupe.7G226400_v2.0.a1
pyrus_communis	pycom02g04290 pycom15g17090
rosa_chinensis	RchiOBHm_Chr2g0091161
rosa_laevigata	RLG00000016187
rosa_multiflora	Rmu_ssc0000457.1_g000001
rosa_roxburghii	Rroxscaffold_2G00150480
rosa_rugosa	Rorug02G0013900
rosa_samantha	Rh2AG059800 Rh2BG058500 Rh2CG060300 Rh2DG059100
rosa_wichuraiana	Rw2G005010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	99
AclWI	GGATC	1 cut(s)	236
AcuI	CTGAAG	2 cut(s)	56, 218
AfaI	GTAC	1 cut(s)	30
AflII	CTTAAG	2 cut(s)	353, 410
AgsI	TTSAA	1 cut(s)	434
AjnI	CCWGG	2 cut(s)	130, 169
AluBI	AGCT	3 cut(s)	70, 196, 346
AluI	AGCT	3 cut(s)	70, 196, 346
Alw26I	GTCTC	1 cut(s)	85
AlwI	GGATC	1 cut(s)	236
AspLEI	GCGC	1 cut(s)	464
AsuHPI	GGTGA	1 cut(s)	427
BccI	CCATC	1 cut(s)	302
BciT130I	CCWGG	2 cut(s)	132, 171
BclI	TGATCA	1 cut(s)	64
BcoDI	GTCTC	1 cut(s)	85
BfmI	CTRYAG	1 cut(s)	420
BfrI	CTTAAG	2 cut(s)	353, 410
BisI	GCNGC	1 cut(s)	99
BlsI	GCNGC	1 cut(s)	100
Bme1390I	CCNGG	2 cut(s)	132, 171
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	2 cut(s)	132, 171
BmsI	GCATC	1 cut(s)	337
BoxI	GACNNNNGTC	1 cut(s)	363
BpmI	CTGGAG	1 cut(s)	336
BpuEI	CTTGAG	2 cut(s)	362, 461
BsaXI	ACNNNNNCTCC	2 cut(s)	185, 215
Bse118I	RCCGGY	1 cut(s)	101
BseBI	CCWGG	2 cut(s)	132, 171
BseRI	GAGGAG	1 cut(s)	206
BsiSI	CCGG	1 cut(s)	102
BsmAI	GTCTC	1 cut(s)	85
BsmBI	CGTCTC	1 cut(s)	85
Bsp143I	GATC	3 cut(s)	64, 219, 241
BspACI	CCGC	1 cut(s)	99
BspLI	GGNNCC	1 cut(s)	6
BspPI	GGATC	1 cut(s)	236
BspTI	CTTAAG	2 cut(s)	353, 410
BsrFI	RCCGGY	1 cut(s)	101
BssAI	RCCGGY	1 cut(s)	101
BssMI	GATC	3 cut(s)	64, 219, 241
Bst2UI	CCWGG	2 cut(s)	132, 171
Bst4CI	ACNGT	4 cut(s)	16, 79, 421, 454
BstAFI	CTTAAG	2 cut(s)	353, 410
BstHHI	GCGC	1 cut(s)	464
BstKTI	GATC	3 cut(s)	67, 222, 244
BstMAI	GTCTC	1 cut(s)	85
BstMBI	GATC	3 cut(s)	64, 219, 241
BstMWI	GCNNNNNNNGC	1 cut(s)	159
BstNI	CCWGG	2 cut(s)	132, 171
BstNSI	RCATGY	2 cut(s)	153, 293
BstPAI	GACNNNNGTC	1 cut(s)	363
BstSCI	CCNGG	2 cut(s)	130, 169
BstSFI	CTRYAG	1 cut(s)	420
BstXI	CCANNNNNNTGG	1 cut(s)	170
BtgZI	GCGATG	1 cut(s)	36
CfoI	GCGC	1 cut(s)	464
Cfr10I	RCCGGY	1 cut(s)	101
Csp6I	GTAC	1 cut(s)	29
CviAII	CATG	4 cut(s)	150, 164, 261, 290
CviJI	RGCY	7 cut(s)	5, 70, 162, 196, 346, 425, 482
CviKI_1	RGCY	7 cut(s)	5, 70, 162, 196, 346, 425, 482
CviQI	GTAC	1 cut(s)	29
DpnI	GATC	3 cut(s)	66, 221, 243
DpnII	GATC	3 cut(s)	64, 219, 241
Eco57I	CTGAAG	2 cut(s)	56, 218
EcoRII	CCWGG	2 cut(s)	130, 169
Esp3I	CGTCTC	1 cut(s)	85
FaeI	CATG	4 cut(s)	153, 167, 264, 293
FaiI	YATR	6 cut(s)	151, 158, 165, 262, 274, 291
FatI	CATG	4 cut(s)	149, 163, 260, 289
FbaI	TGATCA	1 cut(s)	64
Fnu4HI	GCNGC	1 cut(s)	99
Fsp4HI	GCNGC	1 cut(s)	99
GlaI	GCGC	1 cut(s)	463
GluI	GCNGC	1 cut(s)	99
GsuI	CTGGAG	1 cut(s)	336
HapII	CCGG	1 cut(s)	102
HhaI	GCGC	1 cut(s)	464
Hin1II	CATG	4 cut(s)	153, 167, 264, 293
Hin6I	GCGC	1 cut(s)	462
HinP1I	GCGC	1 cut(s)	462
HinfI	GANTC	3 cut(s)	174, 387, 434
HpaII	CCGG	1 cut(s)	102
HphI	GGTGA	1 cut(s)	427
Hpy166II	GTNNAC	2 cut(s)	88, 450
Hpy188I	TCNGA	1 cut(s)	75
Hpy188III	TCNNGA	2 cut(s)	278, 315
Hpy8I	GTNNAC	2 cut(s)	88, 450
HpyAV	CCTTC	1 cut(s)	250
HpyCH4III	ACNGT	4 cut(s)	16, 79, 421, 454
HpyCH4V	TGCA	1 cut(s)	153
HpyF10VI	GCNNNNNNNGC	1 cut(s)	159
Hsp92II	CATG	4 cut(s)	153, 167, 264, 293
HspAI	GCGC	1 cut(s)	462
Ksp22I	TGATCA	1 cut(s)	64
Kzo9I	GATC	3 cut(s)	64, 219, 241
LmnI	GCTCC	2 cut(s)	10, 193
LweI	GCATC	1 cut(s)	337
MaeIII	GTNAC	1 cut(s)	415
MalI	GATC	3 cut(s)	66, 221, 243
MboI	GATC	3 cut(s)	64, 219, 241
MboII	GAAGA	2 cut(s)	43, 323
MluCI	AATT	1 cut(s)	9
MnlI	CCTC	2 cut(s)	184, 460
MseI	TTAA	3 cut(s)	354, 411, 487
MspCI	CTTAAG	2 cut(s)	353, 410
MspI	CCGG	1 cut(s)	102
MspR9I	CCNGG	2 cut(s)	132, 171
MvaI	CCWGG	2 cut(s)	132, 171
MwoI	GCNNNNNNNGC	1 cut(s)	159
NdeII	GATC	3 cut(s)	64, 219, 241
NlaIII	CATG	4 cut(s)	153, 167, 264, 293
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	1 cut(s)	415
NspI	RCATGY	2 cut(s)	153, 293
PfeI	GAWTC	3 cut(s)	174, 387, 434
PkrI	GCNGC	1 cut(s)	100
PshAI	GACNNNNGTC	1 cut(s)	363
Psp6I	CCWGG	2 cut(s)	130, 169
PspGI	CCWGG	2 cut(s)	130, 169
PspN4I	GGNNCC	1 cut(s)	6
RsaI	GTAC	1 cut(s)	30
RsaNI	GTAC	1 cut(s)	29
SaqAI	TTAA	3 cut(s)	354, 411, 487
SatI	GCNGC	1 cut(s)	99
Sau3AI	GATC	3 cut(s)	64, 219, 241
ScrFI	CCNGG	2 cut(s)	132, 171
SetI	ASST	7 cut(s)	72, 198, 348, 354, 380, 411, 417
SfaNI	GCATC	1 cut(s)	337
SfcI	CTRYAG	1 cut(s)	420
SmlI	CTYRAG	4 cut(s)	341, 353, 410, 476
SmoI	CTYRAG	4 cut(s)	341, 353, 410, 476
Sse9I	AATT	1 cut(s)	9
SsiI	CCGC	1 cut(s)	99
StyD4I	CCNGG	2 cut(s)	130, 169
TaaI	ACNGT	4 cut(s)	16, 79, 421, 454
TaqI	TCGA	1 cut(s)	54
TasI	AATT	1 cut(s)	9
TauI	GCSGC	1 cut(s)	101
TfiI	GAWTC	3 cut(s)	174, 387, 434
Tru1I	TTAA	3 cut(s)	354, 411, 487
Tru9I	TTAA	3 cut(s)	354, 411, 487
TseFI	GTSAC	1 cut(s)	415
Tsp45I	GTSAC	1 cut(s)	415
TspDTI	ATGAA	3 cut(s)	72, 166, 269
TspGWI	ACGGA	2 cut(s)	51, 73
Vha464I	CTTAAG	2 cut(s)	353, 410
XceI	RCATGY	2 cut(s)	153, 293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.