pycom15g17090

peroxiredoxin activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0010226
Physical Location & Seq
Reverse (-)
11993267 .. 11994037
771 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g17090.3

Sequence Viewer

Length: 303 bp
ATGGCTCCGATTGCAGTCGGCGATGTTATTCCAGACGGCACTCTCGCCTACCTCGACGAGGAAGACAAGGTCCAATCCGTCAACATCCACTCCCTCGCCGCCGGCAAAAAAGTCATCCTCTTCGGCGTCCCCGGTGCCTTCACCCCCACTTGCAGTTTGAAGCATGTGCCTGGATTCATTGAGAAAGCAGAGGTACTTAAATCAAAGGGTGTTGAGAAAATTCTCTGCCTTAGCGGATCCCTTTGTGATGAAGGCTTGGGCTTAAACATACCCCGAGAACAAAGATGTTCTTTTCCTTGCTGA

Protein Analysis

101

Amino Acids

10.58

Weight (kDa)

5.59

Isoelectric Point (pI)

40.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010226)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G60740 AT1G65970 AT1G65980 AT1G65980
fragaria_vesca FvH4_1g05480
malus_domestica MD02G1062900.v1.1 MD10G1081800.v1.1 MD15G1353500.v1.1
prunus_persica Prupe.7G226400_v2.0.a1
pyrus_communis pycom02g04290 pycom15g17090
rosa_chinensis RchiOBHm_Chr2g0091161
rosa_laevigata RLG00000016187
rosa_multiflora Rmu_ssc0000457.1_g000001
rosa_roxburghii Rroxscaffold_2G00150480
rosa_rugosa Rorug02G0013900
rosa_samantha Rh2AG059800 Rh2BG058500 Rh2CG060300 Rh2DG059100
rosa_wichuraiana Rw2G005010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 134
AciI CCGC 2 cut(s) 99, 234
AclWI GGATC 2 cut(s) 231, 244
AcsI RAATTY 1 cut(s) 219
AcyI GRCGYC 1 cut(s) 126
AfaI GTAC 1 cut(s) 195
AfiI CCNNNNNNNGG 1 cut(s) 58
AgsI TTSAA 1 cut(s) 160
AjnI CCWGG 1 cut(s) 169
AlwI GGATC 2 cut(s) 231, 244
Ama87I CYCGRG 1 cut(s) 273
ApoI RAATTY 1 cut(s) 219
AspS9I GGNCC 1 cut(s) 70
AsuC2I CCSGG 1 cut(s) 132
AsuHPI GGTGA 1 cut(s) 133
AvaI CYCGRG 1 cut(s) 273
AvaII GGWCC 1 cut(s) 70
BamHI GGATCC 1 cut(s) 236
BanI GGYRCC 1 cut(s) 134
BbsI GAAGAC 1 cut(s) 69
BceAI ACGGC 1 cut(s) 52
BciT130I CCWGG 1 cut(s) 171
BcnI CCSGG 1 cut(s) 132
BisI GCNGC 1 cut(s) 99
BlsI GCNGC 1 cut(s) 100
Bme1390I CCNGG 2 cut(s) 132, 171
Bme18I GGWCC 1 cut(s) 70
BmeT110I CYCGRG 1 cut(s) 273
BmgT120I GGNCC 1 cut(s) 70
BmiI GGNNCC 3 cut(s) 6, 136, 238
BmrFI CCNGG 2 cut(s) 132, 171
BpiI GAAGAC 1 cut(s) 69
Bpu10I CCTNAGC 1 cut(s) 230
BpuMI CCSGG 1 cut(s) 132
BsaHI GRCGYC 1 cut(s) 126
BsaJI CCNNGG 1 cut(s) 130
BsaXI ACNNNNNCTCC 2 cut(s) 74, 104
Bsc4I CCNNNNNNNGG 1 cut(s) 58
Bse118I RCCGGY 1 cut(s) 101
BseBI CCWGG 1 cut(s) 171
BseDI CCNNGG 1 cut(s) 130
BseGI GGATG 2 cut(s) 84, 114
BseLI CCNNNNNNNGG 1 cut(s) 58
BshNI GGYRCC 1 cut(s) 134
BsiHKCI CYCGRG 1 cut(s) 273
BsiSI CCGG 2 cut(s) 102, 132
BslFI GGGAC 1 cut(s) 113
BslI CCNNNNNNNGG 1 cut(s) 58
BsmFI GGGAC 1 cut(s) 113
BsoBI CYCGRG 1 cut(s) 273
Bsp143I GATC 1 cut(s) 236
BspACI CCGC 2 cut(s) 99, 234
BspLI GGNNCC 3 cut(s) 6, 136, 238
BspPI GGATC 2 cut(s) 231, 244
BspT107I GGYRCC 1 cut(s) 134
BsrFI RCCGGY 1 cut(s) 101
BssAI RCCGGY 1 cut(s) 101
BssECI CCNNGG 1 cut(s) 130
BssMI GATC 1 cut(s) 236
BssNI GRCGYC 1 cut(s) 126
Bst2UI CCWGG 1 cut(s) 171
Bst6I CTCTTC 1 cut(s) 125
BstACI GRCGYC 1 cut(s) 126
BstC8I GCNNGC 1 cut(s) 103
BstDEI CTNAG 1 cut(s) 230
BstENI CCTNNNNNAGG 1 cut(s) 56
BstF5I GGATG 2 cut(s) 84, 114
BstKTI GATC 1 cut(s) 239
BstMBI GATC 1 cut(s) 236
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstNI CCWGG 1 cut(s) 171
BstNSI RCATGY 1 cut(s) 167
BstSCI CCNGG 2 cut(s) 130, 169
BstV2I GAAGAC 1 cut(s) 69
BstX2I RGATCY 1 cut(s) 236
BstYI RGATCY 1 cut(s) 236
BtgZI GCGATG 1 cut(s) 36
BtsCI GGATG 2 cut(s) 84, 114
Cac8I GCNNGC 1 cut(s) 103
Cfr10I RCCGGY 1 cut(s) 101
Cfr13I GGNCC 1 cut(s) 70
CseI GACGC 1 cut(s) 115
Csp6I GTAC 1 cut(s) 194
CviAII CATG 1 cut(s) 164
CviJI RGCY 3 cut(s) 5, 255, 261
CviKI_1 RGCY 3 cut(s) 5, 255, 261
CviQI GTAC 1 cut(s) 194
DdeI CTNAG 1 cut(s) 230
DpnI GATC 1 cut(s) 238
DpnII GATC 1 cut(s) 236
Eam1104I CTCTTC 1 cut(s) 125
EarI CTCTTC 1 cut(s) 125
Eco47I GGWCC 1 cut(s) 70
Eco88I CYCGRG 1 cut(s) 273
EcoNI CCTNNNNNAGG 1 cut(s) 56
EcoRII CCWGG 1 cut(s) 169
FaeI CATG 1 cut(s) 167
FaiI YATR 2 cut(s) 165, 269
FalI AAGNNNNNCTT 1 cut(s) 274
FaqI GGGAC 1 cut(s) 113
FatI CATG 1 cut(s) 163
Fnu4HI GCNGC 1 cut(s) 99
FokI GGATG 2 cut(s) 71, 101
Fsp4HI GCNGC 1 cut(s) 99
GluI GCNGC 1 cut(s) 99
HapII CCGG 2 cut(s) 102, 132
HgaI GACGC 1 cut(s) 115
Hin1I GRCGYC 1 cut(s) 126
Hin1II CATG 1 cut(s) 167
HincII GTYRAC 1 cut(s) 82
HindII GTYRAC 1 cut(s) 82
HinfI GANTC 1 cut(s) 174
HpaII CCGG 2 cut(s) 102, 132
HphI GGTGA 1 cut(s) 133
Hpy166II GTNNAC 1 cut(s) 82
Hpy188I TCNGA 1 cut(s) 9
Hpy188III TCNNGA 1 cut(s) 32
Hpy8I GTNNAC 1 cut(s) 82
Hpy99I CGWCG 1 cut(s) 59
HpyAV CCTTC 2 cut(s) 148, 245
HpyCH4V TGCA 2 cut(s) 14, 153
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 1 cut(s) 230
Hsp92I GRCGYC 1 cut(s) 126
Hsp92II CATG 1 cut(s) 167
KroI GCCGGC 1 cut(s) 101
KroNI GCCGGC 1 cut(s) 103
Kzo9I GATC 1 cut(s) 236
LmnI GCTCC 1 cut(s) 10
LpnPI CCDG 5 cut(s) 45, 115, 145, 156, 183
MalI GATC 1 cut(s) 238
MboI GATC 1 cut(s) 236
MboII GAAGA 2 cut(s) 74, 112
MflI RGATCY 1 cut(s) 236
MluCI AATT 1 cut(s) 219
MnlI CCTC 5 cut(s) 52, 62, 104, 128, 184
MroNI GCCGGC 1 cut(s) 101
MseI TTAA 2 cut(s) 198, 263
MspI CCGG 2 cut(s) 102, 132
MspR9I CCNGG 2 cut(s) 132, 171
MvaI CCWGG 1 cut(s) 171
MwoI GCNNNNNNNGC 1 cut(s) 11
NaeI GCCGGC 1 cut(s) 103
NciI CCSGG 1 cut(s) 132
NdeII GATC 1 cut(s) 236
NgoMIV GCCGGC 1 cut(s) 101
NlaIII CATG 1 cut(s) 167
NlaIV GGNNCC 3 cut(s) 6, 136, 238
NspI RCATGY 1 cut(s) 167
PcsI WCGNNNNNNNCGW 1 cut(s) 51
PdiI GCCGGC 1 cut(s) 103
PfeI GAWTC 1 cut(s) 174
PflFI GACNNNGTC 1 cut(s) 68
PkrI GCNGC 1 cut(s) 100
Psp6I CCWGG 1 cut(s) 169
PspGI CCWGG 1 cut(s) 169
PspN4I GGNNCC 3 cut(s) 6, 136, 238
PspPI GGNCC 1 cut(s) 70
PsuI RGATCY 1 cut(s) 236
PsyI GACNNNGTC 1 cut(s) 68
RsaI GTAC 1 cut(s) 195
RsaNI GTAC 1 cut(s) 194
SaqAI TTAA 2 cut(s) 198, 263
SatI GCNGC 1 cut(s) 99
Sau3AI GATC 1 cut(s) 236
Sau96I GGNCC 1 cut(s) 70
ScrFI CCNGG 2 cut(s) 132, 171
SetI ASST 3 cut(s) 54, 72, 195
SinI GGWCC 1 cut(s) 70
Sse9I AATT 1 cut(s) 219
SsiI CCGC 2 cut(s) 99, 234
StyD4I CCNGG 2 cut(s) 130, 169
TaqI TCGA 1 cut(s) 54
TasI AATT 1 cut(s) 219
TauI GCSGC 1 cut(s) 101
TfiI GAWTC 1 cut(s) 174
Tru1I TTAA 2 cut(s) 198, 263
Tru9I TTAA 2 cut(s) 198, 263
TspDTI ATGAA 2 cut(s) 166, 264
TspGWI ACGGA 1 cut(s) 67
Tth111I GACNNNGTC 1 cut(s) 68
VpaK11BI GGWCC 1 cut(s) 70
XagI CCTNNNNNAGG 1 cut(s) 56
XapI RAATTY 1 cut(s) 219
XceI RCATGY 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.