Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0010226

Physical Location & Seq

Genomic Coordinates Reverse (-)

12036179 .. 12036337

Gene Structure 159 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1081800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 159 bp

ATGGCTCCGATTGCAGTTGGCGATGTTATTCCAGACGACACTCTCGCCTACTTCGACGAGGACAAGGTCCAATCCATCAACATCCACTCCCTCGCCGCCGGTAAAAAAGCCATCCTCTTCGGCGTCTTCGGTGCCTTCACCCCTACTTGCAGTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0008150 GO:0009507 GO:0009536 GO:0010035 GO:0010038 GO:0016020 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050896 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Redoxin

Protein Analysis

53

Amino Acids

5.49

Weight (kDa)

4.46

Isoelectric Point (pI)

35.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Redoxin	PF08534	6 - 52	1.8e-06	Redoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010226)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60740 AT1G65970 AT1G65980 AT1G65980
fragaria_vesca	FvH4_1g05480
malus_domestica	MD02G1062900.v1.1 MD10G1081800.v1.1 MD15G1353500.v1.1
prunus_persica	Prupe.7G226400_v2.0.a1
pyrus_communis	pycom02g04290 pycom15g17090
rosa_chinensis	RchiOBHm_Chr2g0091161
rosa_laevigata	RLG00000016187
rosa_multiflora	Rmu_ssc0000457.1_g000001
rosa_roxburghii	Rroxscaffold_2G00150480
rosa_rugosa	Rorug02G0013900
rosa_samantha	Rh2AG059800 Rh2BG058500 Rh2CG060300 Rh2DG059100
rosa_wichuraiana	Rw2G005010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	131
AciI	CCGC	1 cut(s)	96
AcyI	GRCGYC	1 cut(s)	123
AspS9I	GGNCC	1 cut(s)	67
AsuHPI	GGTGA	1 cut(s)	130
AvaII	GGWCC	1 cut(s)	67
BanI	GGYRCC	1 cut(s)	131
BbsI	GAAGAC	1 cut(s)	118
BccI	CCATC	2 cut(s)	83, 119
BisI	GCNGC	1 cut(s)	96
BlsI	GCNGC	1 cut(s)	97
Bme18I	GGWCC	1 cut(s)	67
BmgT120I	GGNCC	1 cut(s)	67
BmiI	GGNNCC	2 cut(s)	6, 133
BpiI	GAAGAC	1 cut(s)	118
BsaHI	GRCGYC	1 cut(s)	123
BsaXI	ACNNNNNCTCC	2 cut(s)	71, 101
Bse118I	RCCGGY	1 cut(s)	98
BseGI	GGATG	2 cut(s)	81, 111
BshNI	GGYRCC	1 cut(s)	131
BsiSI	CCGG	1 cut(s)	99
BspACI	CCGC	1 cut(s)	96
BspLI	GGNNCC	2 cut(s)	6, 133
BspT107I	GGYRCC	1 cut(s)	131
BsrFI	RCCGGY	1 cut(s)	98
BssAI	RCCGGY	1 cut(s)	98
BssNI	GRCGYC	1 cut(s)	123
Bst6I	CTCTTC	1 cut(s)	122
BstACI	GRCGYC	1 cut(s)	123
BstF5I	GGATG	2 cut(s)	81, 111
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstV2I	GAAGAC	1 cut(s)	118
BtgZI	GCGATG	1 cut(s)	36
BtsCI	GGATG	2 cut(s)	81, 111
BtsI	GCAGTG	1 cut(s)	157
BtsIMutI	CAGTG	1 cut(s)	157
Cfr10I	RCCGGY	1 cut(s)	98
Cfr13I	GGNCC	1 cut(s)	67
CseI	GACGC	1 cut(s)	112
CviJI	RGCY	2 cut(s)	5, 110
CviKI_1	RGCY	2 cut(s)	5, 110
Eam1104I	CTCTTC	1 cut(s)	122
EarI	CTCTTC	1 cut(s)	122
Eco47I	GGWCC	1 cut(s)	67
Fnu4HI	GCNGC	1 cut(s)	96
FokI	GGATG	2 cut(s)	68, 98
Fsp4HI	GCNGC	1 cut(s)	96
GluI	GCNGC	1 cut(s)	96
HapII	CCGG	1 cut(s)	99
HgaI	GACGC	1 cut(s)	112
Hin1I	GRCGYC	1 cut(s)	123
HpaII	CCGG	1 cut(s)	99
HphI	GGTGA	1 cut(s)	130
Hpy188I	TCNGA	1 cut(s)	9
Hpy188III	TCNNGA	1 cut(s)	32
Hpy99I	CGWCG	1 cut(s)	59
HpyAV	CCTTC	1 cut(s)	145
HpyCH4V	TGCA	2 cut(s)	14, 150
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
Hsp92I	GRCGYC	1 cut(s)	123
LmnI	GCTCC	1 cut(s)	10
LpnPI	CCDG	2 cut(s)	45, 112
MboII	GAAGA	2 cut(s)	109, 118
MnlI	CCTC	3 cut(s)	52, 101, 125
MspI	CCGG	1 cut(s)	99
MwoI	GCNNNNNNNGC	1 cut(s)	11
NlaIV	GGNNCC	2 cut(s)	6, 133
PcsI	WCGNNNNNNNCGW	1 cut(s)	51
PflFI	GACNNNGTC	1 cut(s)	65
PkrI	GCNGC	1 cut(s)	97
PspN4I	GGNNCC	2 cut(s)	6, 133
PspPI	GGNCC	1 cut(s)	67
PsyI	GACNNNGTC	1 cut(s)	65
SatI	GCNGC	1 cut(s)	96
Sau96I	GGNCC	1 cut(s)	67
SetI	ASST	1 cut(s)	69
SgeI	CNNG	6 cut(s)	44, 56, 70, 76, 104, 111
SinI	GGWCC	1 cut(s)	67
SsiI	CCGC	1 cut(s)	96
TaqI	TCGA	1 cut(s)	54
TauI	GCSGC	1 cut(s)	98
TscAI	CASTG	1 cut(s)	157
TspRI	CASTG	1 cut(s)	157
Tth111I	GACNNNGTC	1 cut(s)	65
VpaK11BI	GGWCC	1 cut(s)	67

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.