Rmu_ssc0000457.1_g000001

peroxiredoxin activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000457.1
OG0010226
Physical Location & Seq
Reverse (-)
209 .. 1137
929 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000457.1_g000001.1.cds

Sequence Viewer

Length: 462 bp
atggccccgattgccgtcggcgattcaattccgggcggtactctgtcctacttcgacgaccaagaccagatgcaaacggtcaacagtcactccctcgccgccggcaagaagatcatcctcttcggcgtccccggcgccttcccccccacttgcagtttgaagcatgttcctggatatattgagaaagcagatgagctgaaatccaaggtgaatgacccctttgtgatgaaggcatgggccaaatcctaccctgagaacaagcatgtcctttttgttgctgatggctcagcgaaatacacccatgcccttggtcttgagcttgacctctcggagaaaggacttggaactcgttccaggaggtttgctctcttggtcgatgacctcaaggtgaaggctgcaaatgttgaagctggaggagagttcaccgtctctagtgctgatgacatcctcaaggctctttga

Protein Analysis

153

Amino Acids

16.38

Weight (kDa)

6.06

Isoelectric Point (pI)

29.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010226)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G60740 AT1G65970 AT1G65980 AT1G65980
fragaria_vesca FvH4_1g05480
malus_domestica MD02G1062900.v1.1 MD10G1081800.v1.1 MD15G1353500.v1.1
prunus_persica Prupe.7G226400_v2.0.a1
pyrus_communis pycom02g04290 pycom15g17090
rosa_chinensis RchiOBHm_Chr2g0091161
rosa_laevigata RLG00000016187
rosa_multiflora Rmu_ssc0000457.1_g000001
rosa_roxburghii Rroxscaffold_2G00150480
rosa_rugosa Rorug02G0013900
rosa_samantha Rh2AG059800 Rh2BG058500 Rh2CG060300 Rh2DG059100
rosa_wichuraiana Rw2G005010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 134
AciI CCGC 2 cut(s) 36, 99
AcyI GRCGYC 2 cut(s) 126, 135
AfaI GTAC 1 cut(s) 40
AgsI TTSAA 3 cut(s) 27, 160, 407
AjnI CCWGG 2 cut(s) 169, 353
AluBI AGCT 3 cut(s) 196, 319, 410
AluI AGCT 3 cut(s) 196, 319, 410
Alw26I GTCTC 1 cut(s) 433
AoxI GGCC 2 cut(s) 3, 237
ApeKI GCWGC 1 cut(s) 395
Asp700I GAANNNNTTC 1 cut(s) 349
AspLEI GCGC 1 cut(s) 137
AspS9I GGNCC 2 cut(s) 4, 237
AsuC2I CCSGG 2 cut(s) 33, 132
AsuHPI GGTGA 3 cut(s) 220, 400, 415
BanI GGYRCC 1 cut(s) 134
BbvI GCAGC 1 cut(s) 382
BccI CCATC 1 cut(s) 275
BciT130I CCWGG 2 cut(s) 171, 355
BcnI CCSGG 2 cut(s) 33, 132
BcoDI GTCTC 1 cut(s) 433
BfaI CTAG 1 cut(s) 432
BfoI RGCGCY 1 cut(s) 138
BisI GCNGC 2 cut(s) 99, 396
BlpI GCTNAGC 1 cut(s) 286
BlsI GCNGC 2 cut(s) 100, 397
Bme1390I CCNGG 4 cut(s) 33, 132, 171, 355
BmgT120I GGNCC 2 cut(s) 4, 237
BmiI GGNNCC 2 cut(s) 6, 136
BmrFI CCNGG 4 cut(s) 33, 132, 171, 355
BmsI GCATC 1 cut(s) 60
BplI GAGNNNNNCTC 2 cut(s) 349, 381
BpmI CTGGAG 1 cut(s) 432
Bpu1102I GCTNAGC 1 cut(s) 286
BpuEI CTTGAG 3 cut(s) 335, 368, 434
BpuMI CCSGG 2 cut(s) 33, 132
BsaHI GRCGYC 2 cut(s) 126, 135
BsaJI CCNNGG 3 cut(s) 130, 204, 307
BsaXI ACNNNNNCTCC 2 cut(s) 74, 104
Bse118I RCCGGY 1 cut(s) 101
BseBI CCWGG 2 cut(s) 171, 355
BseDI CCNNGG 3 cut(s) 130, 204, 307
BseGI GGATG 2 cut(s) 114, 444
BseMII CTCAG 2 cut(s) 243, 300
BseRI GAGGAG 1 cut(s) 429
BseXI GCAGC 1 cut(s) 382
BshFI GGCC 2 cut(s) 5, 239
BshNI GGYRCC 1 cut(s) 134
BsiSI CCGG 3 cut(s) 32, 102, 132
BslFI GGGAC 1 cut(s) 113
BsmAI GTCTC 1 cut(s) 433
BsmBI CGTCTC 1 cut(s) 433
BsmFI GGGAC 1 cut(s) 113
BsnI GGCC 2 cut(s) 5, 239
Bsp143I GATC 1 cut(s) 111
Bsp1720I GCTNAGC 1 cut(s) 286
BspACI CCGC 2 cut(s) 36, 99
BspANI GGCC 2 cut(s) 5, 239
BspCNI CTCAG 2 cut(s) 244, 299
BspLI GGNNCC 2 cut(s) 6, 136
BspT107I GGYRCC 1 cut(s) 134
BsrFI RCCGGY 1 cut(s) 101
BssAI RCCGGY 1 cut(s) 101
BssECI CCNNGG 3 cut(s) 130, 204, 307
BssMI GATC 1 cut(s) 111
BssNI GRCGYC 2 cut(s) 126, 135
BssT1I CCWWGG 2 cut(s) 204, 307
Bst2UI CCWGG 2 cut(s) 171, 355
Bst4CI ACNGT 3 cut(s) 79, 86, 427
Bst6I CTCTTC 1 cut(s) 125
BstACI GRCGYC 2 cut(s) 126, 135
BstC8I GCNNGC 1 cut(s) 103
BstDEI CTNAG 2 cut(s) 252, 286
BstF5I GGATG 2 cut(s) 114, 444
BstH2I RGCGCY 1 cut(s) 138
BstHHI GCGC 1 cut(s) 137
BstKTI GATC 1 cut(s) 114
BstMAI GTCTC 1 cut(s) 433
BstMBI GATC 1 cut(s) 111
BstMWI GCNNNNNNNGC 2 cut(s) 11, 132
BstNI CCWGG 2 cut(s) 171, 355
BstNSI RCATGY 2 cut(s) 167, 266
BstSCI CCNGG 4 cut(s) 31, 130, 169, 353
BstV1I GCAGC 1 cut(s) 382
BstXI CCANNNNNNTGG 1 cut(s) 308
BsuRI GGCC 2 cut(s) 5, 239
BtsCI GGATG 2 cut(s) 114, 444
Cac8I GCNNGC 1 cut(s) 103
CfoI GCGC 1 cut(s) 137
Cfr10I RCCGGY 1 cut(s) 101
Cfr13I GGNCC 2 cut(s) 4, 237
CseI GACGC 1 cut(s) 115
Csp6I GTAC 1 cut(s) 39
CviAII CATG 4 cut(s) 164, 234, 263, 302
CviJI RGCY 8 cut(s) 5, 196, 239, 285, 319, 395, 410, 455
CviKI_1 RGCY 8 cut(s) 5, 196, 239, 285, 319, 395, 410, 455
CviQI GTAC 1 cut(s) 39
DdeI CTNAG 2 cut(s) 252, 286
DinI GGCGCC 1 cut(s) 136
DpnI GATC 1 cut(s) 113
DpnII GATC 1 cut(s) 111
Eam1104I CTCTTC 1 cut(s) 125
EarI CTCTTC 1 cut(s) 125
Eco130I CCWWGG 2 cut(s) 204, 307
EcoRII CCWGG 2 cut(s) 169, 353
EcoT14I CCWWGG 2 cut(s) 204, 307
EgeI GGCGCC 1 cut(s) 136
EheI GGCGCC 1 cut(s) 136
ErhI CCWWGG 2 cut(s) 204, 307
Esp3I CGTCTC 1 cut(s) 433
FaeI CATG 4 cut(s) 167, 237, 266, 305
FaiI YATR 5 cut(s) 165, 177, 235, 264, 303
FaqI GGGAC 1 cut(s) 113
FatI CATG 4 cut(s) 163, 233, 262, 301
Fnu4HI GCNGC 2 cut(s) 99, 396
FokI GGATG 2 cut(s) 101, 431
Fsp4HI GCNGC 2 cut(s) 99, 396
FspBI CTAG 1 cut(s) 432
GlaI GCGC 1 cut(s) 136
GluI GCNGC 2 cut(s) 99, 396
GsuI CTGGAG 1 cut(s) 432
HaeII RGCGCY 1 cut(s) 138
HaeIII GGCC 2 cut(s) 5, 239
HapII CCGG 3 cut(s) 32, 102, 132
HgaI GACGC 1 cut(s) 115
HhaI GCGC 1 cut(s) 137
Hin1I GRCGYC 2 cut(s) 126, 135
Hin1II CATG 4 cut(s) 167, 237, 266, 305
Hin6I GCGC 1 cut(s) 135
HinP1I GCGC 1 cut(s) 135
HincII GTYRAC 1 cut(s) 82
HindII GTYRAC 1 cut(s) 82
HinfI GANTC 1 cut(s) 23
HpaII CCGG 3 cut(s) 32, 102, 132
HphI GGTGA 3 cut(s) 220, 400, 415
Hpy166II GTNNAC 2 cut(s) 82, 423
Hpy188I TCNGA 1 cut(s) 331
Hpy188III TCNNGA 1 cut(s) 314
Hpy8I GTNNAC 2 cut(s) 82, 423
Hpy99I CGWCG 2 cut(s) 20, 59
HpyAV CCTTC 3 cut(s) 148, 223, 385
HpyCH4III ACNGT 3 cut(s) 79, 86, 427
HpyCH4V TGCA 3 cut(s) 73, 153, 398
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 132
HpyF3I CTNAG 2 cut(s) 252, 286
Hsp92I GRCGYC 2 cut(s) 126, 135
Hsp92II CATG 4 cut(s) 167, 237, 266, 305
HspAI GCGC 1 cut(s) 135
KasI GGCGCC 1 cut(s) 134
KroI GCCGGC 1 cut(s) 101
KroNI GCCGGC 1 cut(s) 103
Kzo9I GATC 1 cut(s) 111
Lsp1109I GCAGC 1 cut(s) 382
LweI GCATC 1 cut(s) 60
MaeI CTAG 1 cut(s) 432
MaeIII GTNAC 1 cut(s) 86
MalI GATC 1 cut(s) 113
MboI GATC 1 cut(s) 111
MboII GAAGA 2 cut(s) 112, 121
MluCI AATT 1 cut(s) 27
Mly113I GGCGCC 1 cut(s) 135
MnlI CCTC 7 cut(s) 104, 128, 335, 351, 392, 407, 458
MroNI GCCGGC 1 cut(s) 101
MroXI GAANNNNTTC 1 cut(s) 349
MspI CCGG 3 cut(s) 32, 102, 132
MspR9I CCNGG 4 cut(s) 33, 132, 171, 355
MvaI CCWGG 2 cut(s) 171, 355
MwoI GCNNNNNNNGC 2 cut(s) 11, 132
NaeI GCCGGC 1 cut(s) 103
NarI GGCGCC 1 cut(s) 135
NciI CCSGG 2 cut(s) 33, 132
NdeII GATC 1 cut(s) 111
NgoMIV GCCGGC 1 cut(s) 101
NlaIII CATG 4 cut(s) 167, 237, 266, 305
NlaIV GGNNCC 2 cut(s) 6, 136
NmuCI GTSAC 1 cut(s) 86
NspI RCATGY 2 cut(s) 167, 266
PdiI GCCGGC 1 cut(s) 103
PdmI GAANNNNTTC 1 cut(s) 349
PfeI GAWTC 1 cut(s) 23
PfoI TCCNGGA 2 cut(s) 169, 353
PkrI GCNGC 2 cut(s) 100, 397
PluTI GGCGCC 1 cut(s) 138
Psp6I CCWGG 2 cut(s) 169, 353
PspGI CCWGG 2 cut(s) 169, 353
PspN4I GGNNCC 2 cut(s) 6, 136
PspPI GGNCC 2 cut(s) 4, 237
RsaI GTAC 1 cut(s) 40
RsaNI GTAC 1 cut(s) 39
SatI GCNGC 2 cut(s) 99, 396
Sau3AI GATC 1 cut(s) 111
Sau96I GGNCC 2 cut(s) 4, 237
ScrFI CCNGG 4 cut(s) 33, 132, 171, 355
SetI ASST 8 cut(s) 198, 210, 321, 327, 362, 384, 390, 412
SfaNI GCATC 1 cut(s) 60
SfoI GGCGCC 1 cut(s) 136
SmlI CTYRAG 3 cut(s) 314, 383, 449
SmoI CTYRAG 3 cut(s) 314, 383, 449
Sse9I AATT 1 cut(s) 27
SsiI CCGC 2 cut(s) 36, 99
SspDI GGCGCC 1 cut(s) 134
SspMI CTAG 1 cut(s) 432
StyD4I CCNGG 4 cut(s) 31, 130, 169, 353
StyI CCWWGG 2 cut(s) 204, 307
TaaI ACNGT 3 cut(s) 79, 86, 427
TaqI TCGA 2 cut(s) 54, 375
TasI AATT 1 cut(s) 27
TauI GCSGC 1 cut(s) 101
TfiI GAWTC 1 cut(s) 23
TseFI GTSAC 1 cut(s) 86
TseI GCWGC 1 cut(s) 395
Tsp45I GTSAC 1 cut(s) 86
TspDTI ATGAA 1 cut(s) 242
XceI RCATGY 2 cut(s) 167, 266
XmnI GAANNNNTTC 1 cut(s) 349
XspI CTAG 1 cut(s) 432
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.