AT1G61255

glycine-rich protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0010073
Physical Location & Seq
Reverse (-)
22589098 .. 22589789
692 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G61255.1

Sequence Viewer

Length: 432 bp
ATGGCTACAAAACTCAATCTCCTCTTCACGATTTTGCTTCTCACACTAACACTCTCTCACTCACGCCCGGCCCGACCCGAATCATCATCATCAACCGGATCCTACTCGGATCAGCTCAAGAAACACTCTAAAGATAACTATAACAAGGGCTATGGATCAGGAGGATACCCTGGCCTTACAACCGAACCAGCAACCGGTTTTATTTTACCGGGTTCCGGTCCTGGCGGTAGTTACAGCGAACTTAGCGGCGGATATAGCAAAGGACGTGGGGTGAGACTAACGGTGATGTGTGAAGAGAAAGGTCATTGTTACATGAAGAAGCTGACTTGTCCGGCAAAGTGTTTCAAGTCTTTAAGCCGGAAAGGCAAAGGATACGGTGGTGGTGGTGGTGGTTGCACCATTGATTGTAAGAAGTGTGTGGCTTATTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

143

Amino Acids

15.05

Weight (kDa)

9.44

Isoelectric Point (pI)

41.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010073)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G61255 AT2G19000 AT4G21620 AT4G21620 AT5G60530
fragaria_vesca FvH4_3g04450
malus_domestica MD05G1323200.v1.1 MD10G1301000.v1.1
prunus_persica Prupe.4G039400_v2.0.a1
pyrus_communis pycom05g29750 pycom10g25390
rosa_chinensis RchiOBHm_Chr5g0006831
rosa_laevigata RLG00000031432
rosa_multiflora Rmu_co8368257.1_g000001 Rmu_sc0001044.1_g000036
rosa_roxburghii Rroxscaffold_1G00069220
rosa_rugosa Rorug04G0424800
rosa_samantha Rh5AG052500 Rh5BG051600 Rh5CG060100
rosa_wichuraiana Rw5G005210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 225, 246, 249
AclWI GGATC 4 cut(s) 93, 106, 117, 163
AfiI CCNNNNNNNGG 2 cut(s) 194, 215
AgeI ACCGGT 1 cut(s) 194
AgsI TTSAA 1 cut(s) 346
AjiI CACGTC 1 cut(s) 266
AjnI CCWGG 2 cut(s) 169, 220
AluBI AGCT 2 cut(s) 115, 322
AluI AGCT 2 cut(s) 115, 322
Alw26I GTCTC 1 cut(s) 268
AlwI GGATC 4 cut(s) 93, 106, 117, 163
AoxI GGCC 2 cut(s) 69, 172
AsiGI ACCGGT 1 cut(s) 194
AspS9I GGNCC 2 cut(s) 70, 218
AsuC2I CCSGG 2 cut(s) 68, 210
AsuHPI GGTGA 2 cut(s) 283, 295
AvaII GGWCC 1 cut(s) 218
BaeI ACNNNNGTAYC 2 cut(s) 364, 397
BamHI GGATCC 1 cut(s) 98
BciT130I CCWGG 2 cut(s) 171, 222
BciVI GTATCC 2 cut(s) 158, 365
BcnI CCSGG 2 cut(s) 68, 210
BcoDI GTCTC 1 cut(s) 268
BfuI GTATCC 2 cut(s) 158, 365
BglI GCCNNNNNGGC 1 cut(s) 363
BisI GCNGC 1 cut(s) 247
BlsI GCNGC 1 cut(s) 248
Bme1390I CCNGG 4 cut(s) 68, 171, 210, 222
Bme18I GGWCC 1 cut(s) 218
BmgBI CACGTC 1 cut(s) 266
BmgT120I GGNCC 2 cut(s) 70, 218
BmiI GGNNCC 2 cut(s) 100, 214
BmrFI CCNGG 4 cut(s) 68, 171, 210, 222
BpuEI CTTGAG 1 cut(s) 101
BpuMI CCSGG 2 cut(s) 68, 210
BsaJI CCNNGG 1 cut(s) 169
BsaWI WCCGGW 3 cut(s) 95, 194, 215
BsaXI ACNNNNNCTCC 1 cut(s) 33
Bsc4I CCNNNNNNNGG 2 cut(s) 194, 215
Bse118I RCCGGY 1 cut(s) 194
BseBI CCWGG 2 cut(s) 171, 222
BseDI CCNNGG 1 cut(s) 169
BseLI CCNNNNNNNGG 2 cut(s) 194, 215
BseRI GAGGAG 1 cut(s) 11
BshFI GGCC 2 cut(s) 71, 174
BshTI ACCGGT 1 cut(s) 194
BsiSI CCGG 7 cut(s) 68, 96, 195, 209, 216, 332, 358
BslI CCNNNNNNNGG 2 cut(s) 194, 215
BsmAI GTCTC 1 cut(s) 268
BsnI GGCC 2 cut(s) 71, 174
Bsp143I GATC 3 cut(s) 98, 109, 155
BspACI CCGC 3 cut(s) 225, 246, 249
BspANI GGCC 2 cut(s) 71, 174
BspLI GGNNCC 2 cut(s) 100, 214
BspPI GGATC 4 cut(s) 93, 106, 117, 163
BsrFI RCCGGY 1 cut(s) 194
BssAI RCCGGY 1 cut(s) 194
BssECI CCNNGG 1 cut(s) 169
BssMI GATC 3 cut(s) 98, 109, 155
Bst2UI CCWGG 2 cut(s) 171, 222
Bst4CI ACNGT 2 cut(s) 283, 377
Bst6I CTCTTC 2 cut(s) 29, 288
BstDEI CTNAG 1 cut(s) 242
BstKTI GATC 3 cut(s) 101, 112, 158
BstMAI GTCTC 1 cut(s) 268
BstMBI GATC 3 cut(s) 98, 109, 155
BstMWI GCNNNNNNNGC 3 cut(s) 243, 255, 363
BstNI CCWGG 2 cut(s) 171, 222
BstSCI CCNGG 4 cut(s) 66, 169, 208, 220
BstX2I RGATCY 1 cut(s) 98
BstYI RGATCY 1 cut(s) 98
BsuI GTATCC 2 cut(s) 158, 365
BsuRI GGCC 2 cut(s) 71, 174
BtrI CACGTC 1 cut(s) 266
Cfr10I RCCGGY 1 cut(s) 194
Cfr13I GGNCC 2 cut(s) 70, 218
CspAI ACCGGT 1 cut(s) 194
CspCI CAANNNNNGTGG 2 cut(s) 247, 282
CviAII CATG 1 cut(s) 313
CviJI RGCY 8 cut(s) 5, 71, 115, 150, 174, 322, 357, 422
CviKI_1 RGCY 8 cut(s) 5, 71, 115, 150, 174, 322, 357, 422
DdeI CTNAG 1 cut(s) 242
DpnI GATC 3 cut(s) 100, 111, 157
DpnII GATC 3 cut(s) 98, 109, 155
Eam1104I CTCTTC 2 cut(s) 29, 288
EarI CTCTTC 2 cut(s) 29, 288
EciI GGCGGA 1 cut(s) 264
Eco47I GGWCC 1 cut(s) 218
EcoRII CCWGG 2 cut(s) 169, 220
FaeI CATG 1 cut(s) 316
FaiI YATR 4 cut(s) 141, 153, 255, 314
FatI CATG 1 cut(s) 312
Fnu4HI GCNGC 1 cut(s) 247
Fsp4HI GCNGC 1 cut(s) 247
GluI GCNGC 1 cut(s) 247
HaeIII GGCC 2 cut(s) 71, 174
HapII CCGG 7 cut(s) 68, 96, 195, 209, 216, 332, 358
Hin1II CATG 1 cut(s) 316
HinfI GANTC 1 cut(s) 80
HpaII CCGG 7 cut(s) 68, 96, 195, 209, 216, 332, 358
HphI GGTGA 2 cut(s) 283, 295
Hpy188I TCNGA 1 cut(s) 109
Hpy188III TCNNGA 3 cut(s) 28, 118, 159
HpyCH4III ACNGT 2 cut(s) 283, 377
HpyCH4IV ACGT 1 cut(s) 265
HpyCH4V TGCA 1 cut(s) 396
HpyF10VI GCNNNNNNNGC 3 cut(s) 243, 255, 363
HpyF3I CTNAG 1 cut(s) 242
HpySE526I ACGT 1 cut(s) 265
Hsp92II CATG 1 cut(s) 316
Kzo9I GATC 3 cut(s) 98, 109, 155
MaeII ACGT 1 cut(s) 265
MaeIII GTNAC 2 cut(s) 230, 308
MalI GATC 3 cut(s) 100, 111, 157
MboI GATC 3 cut(s) 98, 109, 155
MboII GAAGA 3 cut(s) 16, 305, 328
MflI RGATCY 1 cut(s) 98
MnlI CCTC 2 cut(s) 32, 155
MseI TTAA 1 cut(s) 353
MspI CCGG 7 cut(s) 68, 96, 195, 209, 216, 332, 358
MspR9I CCNGG 4 cut(s) 68, 171, 210, 222
MvaI CCWGG 2 cut(s) 171, 222
MwoI GCNNNNNNNGC 3 cut(s) 243, 255, 363
NciI CCSGG 2 cut(s) 68, 210
NdeII GATC 3 cut(s) 98, 109, 155
NlaIII CATG 1 cut(s) 316
NlaIV GGNNCC 2 cut(s) 100, 214
PcsI WCGNNNNNNNCGW 1 cut(s) 70
PfeI GAWTC 1 cut(s) 80
PinAI ACCGGT 1 cut(s) 194
PkrI GCNGC 1 cut(s) 248
Psp6I CCWGG 2 cut(s) 169, 220
PspGI CCWGG 2 cut(s) 169, 220
PspN4I GGNNCC 2 cut(s) 100, 214
PspPI GGNCC 2 cut(s) 70, 218
PsuI RGATCY 1 cut(s) 98
SaqAI TTAA 1 cut(s) 353
SatI GCNGC 1 cut(s) 247
Sau3AI GATC 3 cut(s) 98, 109, 155
Sau96I GGNCC 2 cut(s) 70, 218
ScrFI CCNGG 4 cut(s) 68, 171, 210, 222
SetI ASST 4 cut(s) 117, 268, 304, 324
SinI GGWCC 1 cut(s) 218
SmlI CTYRAG 1 cut(s) 116
SmoI CTYRAG 1 cut(s) 116
SsiI CCGC 3 cut(s) 225, 246, 249
StyD4I CCNGG 4 cut(s) 66, 169, 208, 220
TaaI ACNGT 2 cut(s) 283, 377
TaiI ACGT 1 cut(s) 268
TauI GCSGC 1 cut(s) 249
TfiI GAWTC 1 cut(s) 80
Tru1I TTAA 1 cut(s) 353
Tru9I TTAA 1 cut(s) 353
TspDTI ATGAA 1 cut(s) 329
VpaK11BI GGWCC 1 cut(s) 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.