Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0010073

Physical Location & Seq

Genomic Coordinates Forward (+)

1844717 .. 1845860

Gene Structure 1144 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G039400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGATCCCAATATCATGTCTTTTCTTATCCACTCTGCTCCTCTCTGCTTCACTTGTTATCTCAGCCCGACCCGAATCCAGTTTCTCAGCTGAACTCAAGCACTCAAATGACAAACCCACCAACCAGAACAACAAAAACAACAACAAAGGTGGTGGTAGTGGTGGTAGTGGTGGTAATGGCGGTAATGATGGTAGTGGTGGCATGGGCGGGTTCTTTGGACCCGGCTTCGACATACCCGGGTTTGGAAAGGGTTTTGGCAGCGGTGTGGGTGGCGGATATGGAGGCGGGTATGGGGGTCCGAATGGAGGGTACTCCAGGGGTGGTACTGTGAGGACTTCTCTGGTGTGTAAAGAAAAGGGTCCATGCTACAAGAAGAAGTTGACTTGCCCTGCTAAGTGCTTCACCTCCTACAGCCGATCAGGAAAGGGATACGGTGGCGGCGGCGGTGGCGGTGGGTGCACCATTGATTGCAAGAAGAAGTGTAGTGCTTATTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

166

Amino Acids

16.32

Weight (kDa)

9.41

Isoelectric Point (pI)

31.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010073)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61255 AT2G19000 AT4G21620 AT4G21620 AT5G60530
fragaria_vesca	FvH4_3g04450
malus_domestica	MD05G1323200.v1.1 MD10G1301000.v1.1
prunus_persica	Prupe.4G039400_v2.0.a1
pyrus_communis	pycom05g29750 pycom10g25390
rosa_chinensis	RchiOBHm_Chr5g0006831
rosa_laevigata	RLG00000031432
rosa_multiflora	Rmu_co8368257.1_g000001 Rmu_sc0001044.1_g000036
rosa_roxburghii	Rroxscaffold_1G00069220
rosa_rugosa	Rorug04G0424800
rosa_samantha	Rh5AG052500 Rh5BG051600 Rh5CG060100
rosa_wichuraiana	Rw5G005210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	9 cut(s)	180, 207, 261, 273, 285, 438, 441, 444, 450
AfaI	GTAC	2 cut(s)	311, 325
AfiI	CCNNNNNNNGG	2 cut(s)	242, 305
AjnI	CCWGG	1 cut(s)	314
AluBI	AGCT	1 cut(s)	89
AluI	AGCT	1 cut(s)	89
Alw21I	GWGCWC	1 cut(s)	461
Alw44I	GTGCAC	1 cut(s)	457
Ama87I	CYCGRG	1 cut(s)	236
ApaLI	GTGCAC	1 cut(s)	457
ApeKI	GCWGC	1 cut(s)	258
AspS9I	GGNCC	3 cut(s)	218, 296, 359
AsuC2I	CCSGG	3 cut(s)	222, 237, 238
AsuHPI	GGTGA	1 cut(s)	394
AvaI	CYCGRG	1 cut(s)	236
AvaII	GGWCC	3 cut(s)	218, 296, 359
BaeGI	GKGCMC	1 cut(s)	461
Bbv12I	GWGCWC	1 cut(s)	461
BbvI	GCAGC	1 cut(s)	270
BccI	CCATC	1 cut(s)	182
BciT130I	CCWGG	1 cut(s)	316
BciVI	GTATCC	1 cut(s)	422
BcnI	CCSGG	3 cut(s)	222, 237, 238
BfaI	CTAG	1 cut(s)	496
BfmI	CTRYAG	1 cut(s)	409
BfuI	GTATCC	1 cut(s)	422
BisI	GCNGC	3 cut(s)	259, 439, 442
BlsI	GCNGC	3 cut(s)	260, 440, 443
Bme1390I	CCNGG	4 cut(s)	222, 237, 238, 316
Bme18I	GGWCC	3 cut(s)	218, 296, 359
BmeT110I	CYCGRG	1 cut(s)	236
BmgT120I	GGNCC	3 cut(s)	218, 296, 359
BmiI	GGNNCC	3 cut(s)	220, 297, 360
BmrFI	CCNGG	4 cut(s)	222, 237, 238, 316
BplI	GAGNNNNNCTC	2 cut(s)	322, 354
BpmI	CTGGAG	1 cut(s)	298
BpuEI	CTTGAG	1 cut(s)	80
BpuMI	CCSGG	3 cut(s)	222, 237, 238
BsaJI	CCNNGG	2 cut(s)	236, 315
Bsc4I	CCNNNNNNNGG	2 cut(s)	242, 305
Bse1I	ACTGG	1 cut(s)	78
BseBI	CCWGG	1 cut(s)	316
BseDI	CCNNGG	2 cut(s)	236, 315
BseLI	CCNNNNNNNGG	2 cut(s)	242, 305
BseMII	CTCAG	2 cut(s)	75, 99
BseNI	ACTGG	1 cut(s)	78
BseRI	GAGGAG	1 cut(s)	29
BseSI	GKGCMC	1 cut(s)	461
BseXI	GCAGC	1 cut(s)	270
BsiHKAI	GWGCWC	1 cut(s)	461
BsiHKCI	CYCGRG	1 cut(s)	236
BsiSI	CCGG	2 cut(s)	222, 237
BslI	CCNNNNNNNGG	2 cut(s)	242, 305
BsoBI	CYCGRG	1 cut(s)	236
Bsp1286I	GDGCHC	1 cut(s)	461
Bsp143I	GATC	2 cut(s)	3, 416
BspACI	CCGC	9 cut(s)	180, 207, 261, 273, 285, 438, 441, 444, 450
BspCNI	CTCAG	2 cut(s)	74, 98
BspLI	GGNNCC	3 cut(s)	220, 297, 360
BsrI	ACTGG	1 cut(s)	78
BssECI	CCNNGG	2 cut(s)	236, 315
BssMI	GATC	2 cut(s)	3, 416
Bst2UI	CCWGG	1 cut(s)	316
Bst4CI	ACNGT	2 cut(s)	328, 434
BstDEI	CTNAG	3 cut(s)	61, 85, 393
BstKTI	GATC	2 cut(s)	6, 419
BstMBI	GATC	2 cut(s)	3, 416
BstMWI	GCNNNNNNNGC	2 cut(s)	447, 456
BstNI	CCWGG	1 cut(s)	316
BstSCI	CCNGG	4 cut(s)	220, 235, 236, 314
BstSFI	CTRYAG	1 cut(s)	409
BstSLI	GKGCMC	1 cut(s)	461
BstV1I	GCAGC	1 cut(s)	270
BsuI	GTATCC	1 cut(s)	422
Cfr13I	GGNCC	3 cut(s)	218, 296, 359
Cfr9I	CCCGGG	1 cut(s)	236
Csp6I	GTAC	2 cut(s)	310, 324
CspCI	CAANNNNNGTGG	4 cut(s)	130, 133, 165, 168
CviAII	CATG	3 cut(s)	15, 202, 363
CviJI	RGCY	4 cut(s)	65, 89, 225, 414
CviKI_1	RGCY	4 cut(s)	65, 89, 225, 414
CviQI	GTAC	2 cut(s)	310, 324
DdeI	CTNAG	3 cut(s)	61, 85, 393
DpnI	GATC	2 cut(s)	5, 418
DpnII	GATC	2 cut(s)	3, 416
EciI	GGCGGA	1 cut(s)	288
Eco47I	GGWCC	3 cut(s)	218, 296, 359
Eco88I	CYCGRG	1 cut(s)	236
EcoRII	CCWGG	1 cut(s)	314
FaeI	CATG	3 cut(s)	18, 205, 366
FaiI	YATR	6 cut(s)	16, 203, 233, 279, 291, 364
FatI	CATG	3 cut(s)	14, 201, 362
FauI	CCCGC	2 cut(s)	200, 278
Fnu4HI	GCNGC	3 cut(s)	259, 439, 442
Fsp4HI	GCNGC	3 cut(s)	259, 439, 442
FspBI	CTAG	1 cut(s)	496
GluI	GCNGC	3 cut(s)	259, 439, 442
GsuI	CTGGAG	1 cut(s)	298
HapII	CCGG	2 cut(s)	222, 237
Hin1II	CATG	3 cut(s)	18, 205, 366
HincII	GTYRAC	1 cut(s)	381
HindII	GTYRAC	1 cut(s)	381
HinfI	GANTC	1 cut(s)	74
HpaII	CCGG	2 cut(s)	222, 237
HphI	GGTGA	1 cut(s)	394
Hpy166II	GTNNAC	2 cut(s)	381, 459
Hpy188I	TCNGA	1 cut(s)	300
Hpy188III	TCNNGA	1 cut(s)	420
Hpy8I	GTNNAC	2 cut(s)	381, 459
HpyCH4III	ACNGT	2 cut(s)	328, 434
HpyCH4V	TGCA	2 cut(s)	459, 471
HpyF10VI	GCNNNNNNNGC	2 cut(s)	447, 456
HpyF3I	CTNAG	3 cut(s)	61, 85, 393
Hsp92II	CATG	3 cut(s)	18, 205, 366
Kzo9I	GATC	2 cut(s)	3, 416
LmnI	GCTCC	1 cut(s)	42
LpnPI	CCDG	9 cut(s)	91, 137, 235, 250, 301, 326, 328, 402, 405
Lsp1109I	GCAGC	1 cut(s)	270
MaeI	CTAG	1 cut(s)	496
MalI	GATC	2 cut(s)	5, 418
MboI	GATC	2 cut(s)	3, 416
MboII	GAAGA	2 cut(s)	385, 487
MhlI	GDGCHC	1 cut(s)	461
MnlI	CCTC	5 cut(s)	50, 275, 299, 324, 415
MslI	CAYNNNNRTG	1 cut(s)	105
MspA1I	CMGCKG	2 cut(s)	89, 261
MspI	CCGG	2 cut(s)	222, 237
MspR9I	CCNGG	4 cut(s)	222, 237, 238, 316
MvaI	CCWGG	1 cut(s)	316
MwoI	GCNNNNNNNGC	2 cut(s)	447, 456
NciI	CCSGG	3 cut(s)	222, 237, 238
NdeII	GATC	2 cut(s)	3, 416
NlaIII	CATG	3 cut(s)	18, 205, 366
NlaIV	GGNNCC	3 cut(s)	220, 297, 360
PfeI	GAWTC	1 cut(s)	74
PkrI	GCNGC	3 cut(s)	260, 440, 443
Psp6I	CCWGG	1 cut(s)	314
PspGI	CCWGG	1 cut(s)	314
PspN4I	GGNNCC	3 cut(s)	220, 297, 360
PspPI	GGNCC	3 cut(s)	218, 296, 359
PvuII	CAGCTG	1 cut(s)	89
RsaI	GTAC	2 cut(s)	311, 325
RsaNI	GTAC	2 cut(s)	310, 324
RseI	CAYNNNNRTG	1 cut(s)	105
SatI	GCNGC	3 cut(s)	259, 439, 442
Sau3AI	GATC	2 cut(s)	3, 416
Sau96I	GGNCC	3 cut(s)	218, 296, 359
ScrFI	CCNGG	4 cut(s)	222, 237, 238, 316
SduI	GDGCHC	1 cut(s)	461
SetI	ASST	3 cut(s)	91, 151, 407
SfcI	CTRYAG	1 cut(s)	409
SinI	GGWCC	3 cut(s)	218, 296, 359
SmaI	CCCGGG	1 cut(s)	238
SmiMI	CAYNNNNRTG	1 cut(s)	105
SmlI	CTYRAG	1 cut(s)	95
SmoI	CTYRAG	1 cut(s)	95
SsiI	CCGC	9 cut(s)	180, 207, 261, 273, 285, 438, 441, 444, 450
SspMI	CTAG	1 cut(s)	496
StyD4I	CCNGG	4 cut(s)	220, 235, 236, 314
TaaI	ACNGT	2 cut(s)	328, 434
TaqI	TCGA	1 cut(s)	228
TauI	GCSGC	2 cut(s)	441, 444
TfiI	GAWTC	1 cut(s)	74
TseI	GCWGC	1 cut(s)	258
TspMI	CCCGGG	1 cut(s)	236
VneI	GTGCAC	1 cut(s)	457
VpaK11BI	GGWCC	3 cut(s)	218, 296, 359
XmaI	CCCGGG	1 cut(s)	236
XspI	CTAG	1 cut(s)	496

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.