FvH4_3g04450

glycine-rich cell wall structural protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0010073
Physical Location & Seq
Forward (+)
2548136 .. 2549101
966 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g04450.t1

Sequence Viewer

Length: 474 bp
ATGATCCCAACTACAAGTCTTCTCTTGCTTACTTTGATCCTCGCTGCTTCACTTGCTGGCTTCTCAGCTCGACCCGACTCCTCCACCGGAGCCTTCTCAGCTGAGCTCAAGCACTCGAGCAACAAGAACAAAGGTGGTGGTGCTGGTGGGGGAAACAATGGTGGATACAATGGAGGTGGCAACAATGGTGGCATGGGAGGGTTCTTTGGGCCCGGGTTTGACATACCCGGGTTTGGAAAGGGCTTTGGAGGTGGGTACGGCGGCGGGTACGGCGGTCCGAGTGGAGGCTCCTCCAAAGGTGGTATAGTCAGGACCACTCAGGTGTGCAAAGAAAAGGGTCCTTGCTTCAACAAGAAGCTGACGTGTCCTGCTAAGTGCTTCACCTCCTACAGCCACTCGGGGAAGGGCTACGGCGGCGGTGGCGGAGGCGGTGGTTGCACCATCGACTGCAAGAAGTGTACTGCTTACTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

158

Amino Acids

15.21

Weight (kDa)

9.35

Isoelectric Point (pI)

30.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010073)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G61255 AT2G19000 AT4G21620 AT4G21620 AT5G60530
fragaria_vesca FvH4_3g04450
malus_domestica MD05G1323200.v1.1 MD10G1301000.v1.1
prunus_persica Prupe.4G039400_v2.0.a1
pyrus_communis pycom05g29750 pycom10g25390
rosa_chinensis RchiOBHm_Chr5g0006831
rosa_laevigata RLG00000031432
rosa_multiflora Rmu_co8368257.1_g000001 Rmu_sc0001044.1_g000036
rosa_roxburghii Rroxscaffold_1G00069220
rosa_rugosa Rorug04G0424800
rosa_samantha Rh5AG052500 Rh5BG051600 Rh5CG060100
rosa_wichuraiana Rw5G005210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 7 cut(s) 261, 264, 273, 414, 417, 423, 429
AclWI GGATC 1 cut(s) 31
AfaI GTAC 3 cut(s) 257, 269, 460
AfiI CCNNNNNNNGG 2 cut(s) 233, 284
AflIII ACRYGT 1 cut(s) 362
AgsI TTSAA 1 cut(s) 349
AjiI CACGTC 1 cut(s) 363
AleI CACNNNNGTG 1 cut(s) 320
AluBI AGCT 4 cut(s) 68, 101, 106, 358
AluI AGCT 4 cut(s) 68, 101, 106, 358
Alw21I GWGCWC 1 cut(s) 108
AlwI GGATC 1 cut(s) 31
Ama87I CYCGRG 4 cut(s) 115, 212, 227, 397
AoxI GGCC 1 cut(s) 209
ApaI GGGCCC 1 cut(s) 213
ApeKI GCWGC 1 cut(s) 44
AspS9I GGNCC 5 cut(s) 209, 210, 275, 312, 338
AsuC2I CCSGG 4 cut(s) 213, 214, 228, 229
AsuHPI GGTGA 1 cut(s) 373
AvaI CYCGRG 4 cut(s) 115, 212, 227, 397
AvaII GGWCC 3 cut(s) 275, 312, 338
BaeGI GKGCMC 1 cut(s) 213
BaeI ACNNNNGTAYC 2 cut(s) 259, 292
BanII GRGCYC 2 cut(s) 108, 213
BbsI GAAGAC 1 cut(s) 11
Bbv12I GWGCWC 1 cut(s) 108
BbvI GCAGC 1 cut(s) 31
BccI CCATC 1 cut(s) 449
BceAI ACGGC 3 cut(s) 274, 286, 427
BciVI GTATCC 1 cut(s) 158
BcnI CCSGG 4 cut(s) 213, 214, 228, 229
BfaI CTAG 1 cut(s) 472
BfmI CTRYAG 1 cut(s) 388
BfuI GTATCC 1 cut(s) 158
BisI GCNGC 3 cut(s) 45, 262, 415
BlpI GCTNAGC 1 cut(s) 102
BlsI GCNGC 3 cut(s) 46, 263, 416
Bme1390I CCNGG 4 cut(s) 213, 214, 228, 229
Bme18I GGWCC 3 cut(s) 275, 312, 338
BmeT110I CYCGRG 4 cut(s) 115, 212, 227, 397
BmgBI CACGTC 1 cut(s) 363
BmgT120I GGNCC 5 cut(s) 209, 210, 275, 312, 338
BmiI GGNNCC 4 cut(s) 91, 211, 289, 339
BmrFI CCNGG 4 cut(s) 213, 214, 228, 229
BpiI GAAGAC 1 cut(s) 11
Bpu1102I GCTNAGC 1 cut(s) 102
BpuEI CTTGAG 1 cut(s) 92
BpuMI CCSGG 4 cut(s) 213, 214, 228, 229
BsaJI CCNNGG 2 cut(s) 212, 227
BsaWI WCCGGW 1 cut(s) 86
Bsc4I CCNNNNNNNGG 2 cut(s) 233, 284
BseDI CCNNGG 2 cut(s) 212, 227
BseLI CCNNNNNNNGG 2 cut(s) 233, 284
BseMII CTCAG 4 cut(s) 78, 93, 111, 332
BseRI GAGGAG 2 cut(s) 70, 280
BseSI GKGCMC 1 cut(s) 213
BseXI GCAGC 1 cut(s) 31
BshFI GGCC 1 cut(s) 211
BsiHKAI GWGCWC 1 cut(s) 108
BsiHKCI CYCGRG 4 cut(s) 115, 212, 227, 397
BsiSI CCGG 3 cut(s) 87, 213, 228
BslI CCNNNNNNNGG 2 cut(s) 233, 284
BsnI GGCC 1 cut(s) 211
BsoBI CYCGRG 4 cut(s) 115, 212, 227, 397
Bsp120I GGGCCC 1 cut(s) 209
Bsp1286I GDGCHC 2 cut(s) 108, 213
Bsp143I GATC 2 cut(s) 3, 36
Bsp1720I GCTNAGC 1 cut(s) 102
BspACI CCGC 7 cut(s) 261, 264, 273, 414, 417, 423, 429
BspANI GGCC 1 cut(s) 211
BspCNI CTCAG 4 cut(s) 77, 94, 110, 331
BspLI GGNNCC 4 cut(s) 91, 211, 289, 339
BspPI GGATC 1 cut(s) 31
BssECI CCNNGG 2 cut(s) 212, 227
BssMI GATC 2 cut(s) 3, 36
BstC8I GCNNGC 1 cut(s) 58
BstDEI CTNAG 5 cut(s) 64, 97, 102, 318, 372
BstKTI GATC 2 cut(s) 6, 39
BstMBI GATC 2 cut(s) 3, 36
BstMWI GCNNNNNNNGC 6 cut(s) 53, 98, 270, 414, 420, 435
BstSCI CCNGG 4 cut(s) 211, 212, 226, 227
BstSFI CTRYAG 1 cut(s) 388
BstSLI GKGCMC 1 cut(s) 213
BstV1I GCAGC 1 cut(s) 31
BstV2I GAAGAC 1 cut(s) 11
BsuI GTATCC 1 cut(s) 158
BsuRI GGCC 1 cut(s) 211
BtrI CACGTC 1 cut(s) 363
Cac8I GCNNGC 1 cut(s) 58
Cfr13I GGNCC 5 cut(s) 209, 210, 275, 312, 338
Cfr9I CCCGGG 2 cut(s) 212, 227
CpoI CGGWCCG 1 cut(s) 275
Csp6I GTAC 3 cut(s) 256, 268, 459
CspCI CAANNNNNGTGG 6 cut(s) 118, 153, 157, 169, 192, 204
CspI CGGWCCG 1 cut(s) 275
CviAII CATG 1 cut(s) 193
CviQI GTAC 3 cut(s) 256, 268, 459
DdeI CTNAG 5 cut(s) 64, 97, 102, 318, 372
DpnI GATC 2 cut(s) 5, 38
DpnII GATC 2 cut(s) 3, 36
EciI GGCGGA 1 cut(s) 438
Ecl136II GAGCTC 1 cut(s) 106
Eco24I GRGCYC 2 cut(s) 108, 213
Eco47I GGWCC 3 cut(s) 275, 312, 338
Eco53kI GAGCTC 1 cut(s) 106
Eco88I CYCGRG 4 cut(s) 115, 212, 227, 397
EcoICRI GAGCTC 1 cut(s) 106
EcoO109I RGGNCCY 1 cut(s) 338
EcoT38I GRGCYC 2 cut(s) 108, 213
FaeI CATG 1 cut(s) 196
FaiI YATR 3 cut(s) 194, 224, 305
FatI CATG 1 cut(s) 192
FauI CCCGC 1 cut(s) 257
Fnu4HI GCNGC 3 cut(s) 45, 262, 415
FriOI GRGCYC 2 cut(s) 108, 213
Fsp4HI GCNGC 3 cut(s) 45, 262, 415
FspBI CTAG 1 cut(s) 472
GluI GCNGC 3 cut(s) 45, 262, 415
HaeIII GGCC 1 cut(s) 211
HapII CCGG 3 cut(s) 87, 213, 228
Hin1II CATG 1 cut(s) 196
HinfI GANTC 1 cut(s) 77
HpaII CCGG 3 cut(s) 87, 213, 228
HphI GGTGA 1 cut(s) 373
Hpy166II GTNNAC 1 cut(s) 459
Hpy188I TCNGA 1 cut(s) 279
Hpy188III TCNNGA 1 cut(s) 310
Hpy8I GTNNAC 1 cut(s) 459
HpyAV CCTTC 2 cut(s) 103, 397
HpyCH4IV ACGT 1 cut(s) 362
HpyCH4V TGCA 3 cut(s) 327, 438, 450
HpyF10VI GCNNNNNNNGC 6 cut(s) 53, 98, 270, 414, 420, 435
HpyF3I CTNAG 5 cut(s) 64, 97, 102, 318, 372
HpySE526I ACGT 1 cut(s) 362
Hsp92II CATG 1 cut(s) 196
Kzo9I GATC 2 cut(s) 3, 36
LmnI GCTCC 2 cut(s) 89, 293
LpnPI CCDG 8 cut(s) 42, 100, 129, 226, 241, 295, 305, 381
Lsp1109I GCAGC 1 cut(s) 31
MaeI CTAG 1 cut(s) 472
MaeII ACGT 1 cut(s) 362
MalI GATC 2 cut(s) 5, 38
MboI GATC 2 cut(s) 3, 36
MboII GAAGA 1 cut(s) 11
MhlI GDGCHC 2 cut(s) 108, 213
MlyI GAGTC 1 cut(s) 71
MnlI CCTC 9 cut(s) 50, 91, 167, 191, 242, 278, 301, 394, 419
MslI CAYNNNNRTG 1 cut(s) 320
MspA1I CMGCKG 1 cut(s) 101
MspI CCGG 3 cut(s) 87, 213, 228
MspR9I CCNGG 4 cut(s) 213, 214, 228, 229
MwoI GCNNNNNNNGC 6 cut(s) 53, 98, 270, 414, 420, 435
NciI CCSGG 4 cut(s) 213, 214, 228, 229
NdeII GATC 2 cut(s) 3, 36
NlaIII CATG 1 cut(s) 196
NlaIV GGNNCC 4 cut(s) 91, 211, 289, 339
OliI CACNNNNGTG 1 cut(s) 320
PaeR7I CTCGAG 1 cut(s) 115
PkrI GCNGC 3 cut(s) 46, 263, 416
PleI GAGTC 1 cut(s) 71
PpsI GAGTC 1 cut(s) 71
PpuMI RGGWCCY 1 cut(s) 338
Psp124BI GAGCTC 1 cut(s) 108
Psp5II RGGWCCY 1 cut(s) 338
PspN4I GGNNCC 4 cut(s) 91, 211, 289, 339
PspOMI GGGCCC 1 cut(s) 209
PspPI GGNCC 5 cut(s) 209, 210, 275, 312, 338
PspPPI RGGWCCY 1 cut(s) 338
PspXI VCTCGAGB 1 cut(s) 115
PvuII CAGCTG 1 cut(s) 101
RsaI GTAC 3 cut(s) 257, 269, 460
RsaNI GTAC 3 cut(s) 256, 268, 459
RseI CAYNNNNRTG 1 cut(s) 320
Rsr2I CGGWCCG 1 cut(s) 275
RsrII CGGWCCG 1 cut(s) 275
SacI GAGCTC 1 cut(s) 108
SatI GCNGC 3 cut(s) 45, 262, 415
Sau3AI GATC 2 cut(s) 3, 36
Sau96I GGNCC 5 cut(s) 209, 210, 275, 312, 338
SchI GAGTC 1 cut(s) 71
ScrFI CCNGG 4 cut(s) 213, 214, 228, 229
SduI GDGCHC 2 cut(s) 108, 213
SfcI CTRYAG 1 cut(s) 388
Sfr274I CTCGAG 1 cut(s) 115
SinI GGWCC 3 cut(s) 275, 312, 338
SlaI CTCGAG 1 cut(s) 115
SmaI CCCGGG 2 cut(s) 214, 229
SmiMI CAYNNNNRTG 1 cut(s) 320
SmlI CTYRAG 2 cut(s) 107, 115
SmoI CTYRAG 2 cut(s) 107, 115
SsiI CCGC 7 cut(s) 261, 264, 273, 414, 417, 423, 429
SspMI CTAG 1 cut(s) 472
SstI GAGCTC 1 cut(s) 108
StyD4I CCNGG 4 cut(s) 211, 212, 226, 227
TaiI ACGT 1 cut(s) 365
TaqI TCGA 3 cut(s) 70, 116, 444
TatI WGTACW 1 cut(s) 458
TauI GCSGC 2 cut(s) 264, 417
TseI GCWGC 1 cut(s) 44
TspMI CCCGGG 2 cut(s) 212, 227
VpaK11BI GGWCC 3 cut(s) 275, 312, 338
XhoI CTCGAG 1 cut(s) 115
XmaI CCCGGG 2 cut(s) 212, 227
XspI CTAG 1 cut(s) 472
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.