Rroxscaffold_1G00069220

glycine-rich cell wall structural protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0010073
Physical Location & Seq
Reverse (-)
90207454 .. 90207915
462 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00069220.1

Sequence Viewer

Length: 462 bp
ATGATCCCAACAACAAGTCTTCTCTTGGCAACTTTGATCCTCACTGCTTCACTTGGTGGCTTGTCTGCCCGACCTGAGTCCACCGGAGCCTTCTCAGCTGAGCTCAAGCACTCAAACAACAAGAACAAAGGTGGTGGAGCTGGTGGCAATAATGGTGGCGGTGGCGGTGGCGGCATGGGAGGGTTCTTTGGGCCCGGAGGTGGGTTTGACATACCCGGGTTTGGAAAGGGCTTTGGAGGCGGCTATGGTGGAGGGTACGGCGGTCCAAGCGGAGGCTCCTCCAAGGGTGGTATCGTGAGGCCTACTCAGGTGTGCAAAGCAAAGGGTCCTTGCTTCAACAAGAAGCTGACATGTCCTGCTAAGTGCTTCACCTCCTACAGCCGCTCAGGGAAGGGCTACGGCGGCGGCGGCGGAGGCGGTGGGTGCACCATCGACTGCAAGAAGTGTACTGCTTATTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

153

Amino Acids

14.61

Weight (kDa)

9.55

Isoelectric Point (pI)

42.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010073)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G61255 AT2G19000 AT4G21620 AT4G21620 AT5G60530
fragaria_vesca FvH4_3g04450
malus_domestica MD05G1323200.v1.1 MD10G1301000.v1.1
prunus_persica Prupe.4G039400_v2.0.a1
pyrus_communis pycom05g29750 pycom10g25390
rosa_chinensis RchiOBHm_Chr5g0006831
rosa_laevigata RLG00000031432
rosa_multiflora Rmu_co8368257.1_g000001 Rmu_sc0001044.1_g000036
rosa_roxburghii Rroxscaffold_1G00069220
rosa_rugosa Rorug04G0424800
rosa_samantha Rh5AG052500 Rh5BG051600 Rh5CG060100
rosa_wichuraiana Rw5G005210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 384
AclWI GGATC 1 cut(s) 31
AdeI CACNNNGTG 1 cut(s) 56
AfaI GTAC 2 cut(s) 257, 448
AfiI CCNNNNNNNGG 4 cut(s) 200, 201, 221, 272
AflIII ACRYGT 1 cut(s) 350
AgsI TTSAA 1 cut(s) 337
AluBI AGCT 4 cut(s) 98, 103, 140, 346
AluI AGCT 4 cut(s) 98, 103, 140, 346
Alw21I GWGCWC 2 cut(s) 105, 428
Alw44I GTGCAC 1 cut(s) 424
AlwI GGATC 1 cut(s) 31
Ama87I CYCGRG 1 cut(s) 215
AoxI GGCC 2 cut(s) 191, 299
ApaI GGGCCC 1 cut(s) 195
ApaLI GTGCAC 1 cut(s) 424
AspS9I GGNCC 4 cut(s) 191, 192, 263, 326
AsuC2I CCSGG 3 cut(s) 195, 216, 217
AsuHPI GGTGA 1 cut(s) 361
AvaI CYCGRG 1 cut(s) 215
AvaII GGWCC 2 cut(s) 263, 326
BaeGI GKGCMC 2 cut(s) 195, 428
BaeI ACNNNNGTAYC 2 cut(s) 247, 280
BanII GRGCYC 2 cut(s) 105, 195
BbsI GAAGAC 1 cut(s) 11
Bbv12I GWGCWC 2 cut(s) 105, 428
BccI CCATC 1 cut(s) 437
BceAI ACGGC 2 cut(s) 274, 415
BcnI CCSGG 3 cut(s) 195, 216, 217
BfaI CTAG 1 cut(s) 460
BfmI CTRYAG 1 cut(s) 376
BisI GCNGC 6 cut(s) 172, 241, 382, 403, 406, 409
BlpI GCTNAGC 1 cut(s) 99
BlsI GCNGC 6 cut(s) 173, 242, 383, 404, 407, 410
Bme1390I CCNGG 3 cut(s) 195, 216, 217
Bme18I GGWCC 2 cut(s) 263, 326
BmeT110I CYCGRG 1 cut(s) 215
BmgT120I GGNCC 4 cut(s) 191, 192, 263, 326
BmiI GGNNCC 4 cut(s) 88, 193, 277, 327
BmrFI CCNGG 3 cut(s) 195, 216, 217
BoxI GACNNNNGTC 1 cut(s) 76
BpiI GAAGAC 1 cut(s) 11
BplI GAGNNNNNCTC 2 cut(s) 289, 321
Bpu10I CCTNAGC 1 cut(s) 385
Bpu1102I GCTNAGC 1 cut(s) 99
BpuEI CTTGAG 1 cut(s) 89
BpuMI CCSGG 3 cut(s) 195, 216, 217
BsaJI CCNNGG 2 cut(s) 215, 282
BsaWI WCCGGW 1 cut(s) 83
Bsc4I CCNNNNNNNGG 4 cut(s) 200, 201, 221, 272
BseDI CCNNGG 2 cut(s) 215, 282
BseLI CCNNNNNNNGG 4 cut(s) 200, 201, 221, 272
BseMII CTCAG 5 cut(s) 66, 90, 108, 320, 399
BseRI GAGGAG 1 cut(s) 268
BseSI GKGCMC 2 cut(s) 195, 428
BshFI GGCC 2 cut(s) 193, 301
BsiHKAI GWGCWC 2 cut(s) 105, 428
BsiHKCI CYCGRG 1 cut(s) 215
BsiSI CCGG 3 cut(s) 84, 195, 216
BslI CCNNNNNNNGG 4 cut(s) 200, 201, 221, 272
BsnI GGCC 2 cut(s) 193, 301
BsoBI CYCGRG 1 cut(s) 215
Bsp120I GGGCCC 1 cut(s) 191
Bsp1286I GDGCHC 3 cut(s) 105, 195, 428
Bsp143I GATC 2 cut(s) 3, 36
Bsp1720I GCTNAGC 1 cut(s) 99
BspANI GGCC 2 cut(s) 193, 301
BspCNI CTCAG 5 cut(s) 67, 91, 107, 319, 398
BspLI GGNNCC 4 cut(s) 88, 193, 277, 327
BspPI GGATC 1 cut(s) 31
BsrBI CCGCTC 1 cut(s) 384
BssECI CCNNGG 2 cut(s) 215, 282
BssMI GATC 2 cut(s) 3, 36
BssT1I CCWWGG 1 cut(s) 282
BstDEI CTNAG 6 cut(s) 75, 94, 99, 306, 360, 385
BstKTI GATC 2 cut(s) 6, 39
BstMBI GATC 2 cut(s) 3, 36
BstMWI GCNNNNNNNGC 8 cut(s) 95, 171, 237, 267, 402, 408, 414, 423
BstNSI RCATGY 1 cut(s) 354
BstPAI GACNNNNGTC 1 cut(s) 76
BstSCI CCNGG 3 cut(s) 193, 214, 215
BstSFI CTRYAG 1 cut(s) 376
BstSLI GKGCMC 2 cut(s) 195, 428
BstV2I GAAGAC 1 cut(s) 11
BsuRI GGCC 2 cut(s) 193, 301
BtsI GCAGTG 1 cut(s) 42
BtsIMutI CAGTG 1 cut(s) 42
Cfr13I GGNCC 4 cut(s) 191, 192, 263, 326
Cfr9I CCCGGG 1 cut(s) 215
Csp6I GTAC 2 cut(s) 256, 447
CspCI CAANNNNNGTGG 4 cut(s) 115, 136, 150, 171
CviAII CATG 2 cut(s) 175, 351
CviQI GTAC 2 cut(s) 256, 447
DdeI CTNAG 6 cut(s) 75, 94, 99, 306, 360, 385
DpnI GATC 2 cut(s) 5, 38
DpnII GATC 2 cut(s) 3, 36
DraIII CACNNNGTG 1 cut(s) 56
EciI GGCGGA 1 cut(s) 426
Ecl136II GAGCTC 1 cut(s) 103
Eco130I CCWWGG 1 cut(s) 282
Eco147I AGGCCT 1 cut(s) 301
Eco24I GRGCYC 2 cut(s) 105, 195
Eco47I GGWCC 2 cut(s) 263, 326
Eco53kI GAGCTC 1 cut(s) 103
Eco88I CYCGRG 1 cut(s) 215
EcoICRI GAGCTC 1 cut(s) 103
EcoO109I RGGNCCY 1 cut(s) 326
EcoT14I CCWWGG 1 cut(s) 282
EcoT38I GRGCYC 2 cut(s) 105, 195
ErhI CCWWGG 1 cut(s) 282
FaeI CATG 2 cut(s) 178, 354
FaiI YATR 4 cut(s) 176, 212, 246, 352
FatI CATG 2 cut(s) 174, 350
Fnu4HI GCNGC 6 cut(s) 172, 241, 382, 403, 406, 409
FriOI GRGCYC 2 cut(s) 105, 195
Fsp4HI GCNGC 6 cut(s) 172, 241, 382, 403, 406, 409
FspBI CTAG 1 cut(s) 460
GluI GCNGC 6 cut(s) 172, 241, 382, 403, 406, 409
HaeIII GGCC 2 cut(s) 193, 301
HapII CCGG 3 cut(s) 84, 195, 216
Hin1II CATG 2 cut(s) 178, 354
HinfI GANTC 1 cut(s) 77
HpaII CCGG 3 cut(s) 84, 195, 216
HphI GGTGA 1 cut(s) 361
Hpy166II GTNNAC 3 cut(s) 81, 426, 447
Hpy188III TCNNGA 1 cut(s) 295
Hpy8I GTNNAC 3 cut(s) 81, 426, 447
HpyAV CCTTC 2 cut(s) 100, 385
HpyCH4V TGCA 3 cut(s) 315, 426, 438
HpyF10VI GCNNNNNNNGC 8 cut(s) 95, 171, 237, 267, 402, 408, 414, 423
HpyF3I CTNAG 6 cut(s) 75, 94, 99, 306, 360, 385
Hsp92II CATG 2 cut(s) 178, 354
Kzo9I GATC 2 cut(s) 3, 36
LmnI GCTCC 3 cut(s) 86, 137, 281
LpnPI CCDG 8 cut(s) 87, 97, 126, 208, 229, 293, 369, 372
MaeI CTAG 1 cut(s) 460
MalI GATC 2 cut(s) 5, 38
MbiI CCGCTC 1 cut(s) 384
MboI GATC 2 cut(s) 3, 36
MboII GAAGA 1 cut(s) 11
MhlI GDGCHC 3 cut(s) 105, 195, 428
MlyI GAGTC 1 cut(s) 86
MspA1I CMGCKG 1 cut(s) 98
MspI CCGG 3 cut(s) 84, 195, 216
MspR9I CCNGG 3 cut(s) 195, 216, 217
MwoI GCNNNNNNNGC 8 cut(s) 95, 171, 237, 267, 402, 408, 414, 423
NciI CCSGG 3 cut(s) 195, 216, 217
NdeII GATC 2 cut(s) 3, 36
NlaIII CATG 2 cut(s) 178, 354
NlaIV GGNNCC 4 cut(s) 88, 193, 277, 327
NspI RCATGY 1 cut(s) 354
PceI AGGCCT 1 cut(s) 301
PciI ACATGT 1 cut(s) 350
PkrI GCNGC 6 cut(s) 173, 242, 383, 404, 407, 410
PleI GAGTC 1 cut(s) 85
PpsI GAGTC 1 cut(s) 85
PpuMI RGGWCCY 1 cut(s) 326
PscI ACATGT 1 cut(s) 350
PshAI GACNNNNGTC 1 cut(s) 76
Psp124BI GAGCTC 1 cut(s) 105
Psp5II RGGWCCY 1 cut(s) 326
PspN4I GGNNCC 4 cut(s) 88, 193, 277, 327
PspOMI GGGCCC 1 cut(s) 191
PspPI GGNCC 4 cut(s) 191, 192, 263, 326
PspPPI RGGWCCY 1 cut(s) 326
PvuII CAGCTG 1 cut(s) 98
RsaI GTAC 2 cut(s) 257, 448
RsaNI GTAC 2 cut(s) 256, 447
SacI GAGCTC 1 cut(s) 105
SatI GCNGC 6 cut(s) 172, 241, 382, 403, 406, 409
Sau3AI GATC 2 cut(s) 3, 36
Sau96I GGNCC 4 cut(s) 191, 192, 263, 326
SchI GAGTC 1 cut(s) 86
ScrFI CCNGG 3 cut(s) 195, 216, 217
SduI GDGCHC 3 cut(s) 105, 195, 428
SetI ASST 9 cut(s) 76, 100, 105, 133, 142, 202, 312, 348, 374
SfcI CTRYAG 1 cut(s) 376
SinI GGWCC 2 cut(s) 263, 326
SmaI CCCGGG 1 cut(s) 217
SmlI CTYRAG 1 cut(s) 104
SmoI CTYRAG 1 cut(s) 104
SseBI AGGCCT 1 cut(s) 301
SspMI CTAG 1 cut(s) 460
SstI GAGCTC 1 cut(s) 105
StuI AGGCCT 1 cut(s) 301
StyD4I CCNGG 3 cut(s) 193, 214, 215
StyI CCWWGG 1 cut(s) 282
TaqI TCGA 1 cut(s) 432
TatI WGTACW 1 cut(s) 446
TauI GCSGC 6 cut(s) 174, 243, 384, 405, 408, 411
TscAI CASTG 1 cut(s) 49
TspMI CCCGGG 1 cut(s) 215
TspRI CASTG 1 cut(s) 49
VneI GTGCAC 1 cut(s) 424
VpaK11BI GGWCC 2 cut(s) 263, 326
XceI RCATGY 1 cut(s) 354
XmaI CCCGGG 1 cut(s) 215
XspI CTAG 1 cut(s) 460
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.