AT4G21620

glycine-rich protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0010073
Physical Location & Seq
Forward (+)
11491264 .. 11492216
953 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G21620.1

Sequence Viewer

Length: 396 bp
ATGTTCACAAAATCTATCCTTTTGGCTTCTCTTCTTATCATCATCCTCGTCTCTGCAACTGAATCAGCTCGTCAAAAGAGCGGGAACGATGGTTTAGGATTCGGTGGTGTACCCGGATCCGGATTTATACCCGGGTTTGGAAACGGGTTTCCGGGGACTGGAGTTGGTGGTGGATACGGTGGAGGGTTTGGTGGTCCTAGCGGAGGGTTTGGGAAAGGAGGTGTGGTGAGACCAACGGTTACTTGCAAAGAGAAAGGACCTTGTAACGGCAAGAAGCTTAGGTGTCCTGCTAAGTGTTTCAAATCTTTTAGCCGCTCCGGGAAAGGATACGGCGGTGGAGGTGGCGGTGGAGGATGTACTATGGATTGTAAGAAGAAGTGTATCGCTTATTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

131

Amino Acids

12.86

Weight (kDa)

9.7

Isoelectric Point (pI)

33.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010073)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G61255 AT2G19000 AT4G21620 AT4G21620 AT5G60530
fragaria_vesca FvH4_3g04450
malus_domestica MD05G1323200.v1.1 MD10G1301000.v1.1
prunus_persica Prupe.4G039400_v2.0.a1
pyrus_communis pycom05g29750 pycom10g25390
rosa_chinensis RchiOBHm_Chr5g0006831
rosa_laevigata RLG00000031432
rosa_multiflora Rmu_co8368257.1_g000001 Rmu_sc0001044.1_g000036
rosa_roxburghii Rroxscaffold_1G00069220
rosa_rugosa Rorug04G0424800
rosa_samantha Rh5AG052500 Rh5BG051600 Rh5CG060100
rosa_wichuraiana Rw5G005210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 81, 315
AccIII TCCGGA 1 cut(s) 119
AciI CCGC 5 cut(s) 81, 201, 313, 333, 345
AclWI GGATC 2 cut(s) 111, 124
AfaI GTAC 2 cut(s) 111, 358
AfiI CCNNNNNNNGG 5 cut(s) 119, 137, 158, 203, 266
AgsI TTSAA 1 cut(s) 301
AluBI AGCT 2 cut(s) 68, 277
AluI AGCT 2 cut(s) 68, 277
Alw26I GTCTC 2 cut(s) 55, 223
AlwI GGATC 2 cut(s) 111, 124
Ama87I CYCGRG 1 cut(s) 131
Aor13HI TCCGGA 1 cut(s) 119
AspS9I GGNCC 2 cut(s) 194, 257
AsuC2I CCSGG 5 cut(s) 114, 132, 133, 153, 319
AsuHPI GGTGA 1 cut(s) 238
AvaI CYCGRG 1 cut(s) 131
AvaII GGWCC 2 cut(s) 194, 257
BaeI ACNNNNGTAYC 2 cut(s) 319, 352
BamHI GGATCC 1 cut(s) 116
BccI CCATC 1 cut(s) 83
BceAI ACGGC 2 cut(s) 283, 346
BciVI GTATCC 2 cut(s) 167, 320
BcnI CCSGG 5 cut(s) 114, 132, 133, 153, 319
BcoDI GTCTC 2 cut(s) 55, 223
BfaI CTAG 1 cut(s) 198
BfuI GTATCC 2 cut(s) 167, 320
BisI GCNGC 1 cut(s) 313
BlsI GCNGC 1 cut(s) 314
Bme1390I CCNGG 5 cut(s) 114, 132, 133, 153, 319
Bme18I GGWCC 2 cut(s) 194, 257
BmeT110I CYCGRG 1 cut(s) 131
BmgT120I GGNCC 2 cut(s) 194, 257
BmiI GGNNCC 1 cut(s) 118
BmrFI CCNGG 5 cut(s) 114, 132, 133, 153, 319
BpmI CTGGAG 1 cut(s) 180
Bpu10I CCTNAGC 1 cut(s) 278
BpuMI CCSGG 5 cut(s) 114, 132, 133, 153, 319
BsaI GGTCTC 1 cut(s) 223
BsaJI CCNNGG 2 cut(s) 131, 152
BsaWI WCCGGW 1 cut(s) 119
BsaXI ACNNNNNCTCC 2 cut(s) 210, 240
Bsc4I CCNNNNNNNGG 5 cut(s) 119, 137, 158, 203, 266
Bse1I ACTGG 1 cut(s) 163
BseAI TCCGGA 1 cut(s) 119
BseDI CCNNGG 2 cut(s) 131, 152
BseGI GGATG 2 cut(s) 42, 359
BseLI CCNNNNNNNGG 5 cut(s) 119, 137, 158, 203, 266
BseNI ACTGG 1 cut(s) 163
BsiHKCI CYCGRG 1 cut(s) 131
BsiSI CCGG 5 cut(s) 114, 120, 132, 152, 318
BslFI GGGAC 1 cut(s) 169
BslI CCNNNNNNNGG 5 cut(s) 119, 137, 158, 203, 266
BsmAI GTCTC 2 cut(s) 55, 223
BsmBI CGTCTC 1 cut(s) 55
BsmFI GGGAC 1 cut(s) 169
Bso31I GGTCTC 1 cut(s) 223
BsoBI CYCGRG 1 cut(s) 131
Bsp13I TCCGGA 1 cut(s) 119
Bsp143I GATC 1 cut(s) 116
BspACI CCGC 5 cut(s) 81, 201, 313, 333, 345
BspEI TCCGGA 1 cut(s) 119
BspLI GGNNCC 1 cut(s) 118
BspPI GGATC 2 cut(s) 111, 124
BspTNI GGTCTC 1 cut(s) 223
BsrBI CCGCTC 2 cut(s) 81, 315
BsrI ACTGG 1 cut(s) 163
BssECI CCNNGG 2 cut(s) 131, 152
BssMI GATC 1 cut(s) 116
Bst4CI ACNGT 2 cut(s) 179, 238
Bst6I CTCTTC 1 cut(s) 36
BstDEI CTNAG 2 cut(s) 278, 291
BstENI CCTNNNNNAGG 1 cut(s) 201
BstF5I GGATG 2 cut(s) 42, 359
BstKTI GATC 1 cut(s) 119
BstMAI GTCTC 2 cut(s) 55, 223
BstMBI GATC 1 cut(s) 116
BstSCI CCNGG 5 cut(s) 112, 130, 131, 151, 317
BstX2I RGATCY 1 cut(s) 116
BstYI RGATCY 1 cut(s) 116
BsuI GTATCC 2 cut(s) 167, 320
BtsCI GGATG 2 cut(s) 42, 359
Cfr13I GGNCC 2 cut(s) 194, 257
Cfr9I CCCGGG 1 cut(s) 131
Csp6I GTAC 2 cut(s) 110, 357
CviJI RGCY 4 cut(s) 26, 68, 277, 312
CviKI_1 RGCY 4 cut(s) 26, 68, 277, 312
CviQI GTAC 2 cut(s) 110, 357
DdeI CTNAG 2 cut(s) 278, 291
DpnI GATC 1 cut(s) 118
DpnII GATC 1 cut(s) 116
Eam1104I CTCTTC 1 cut(s) 36
EarI CTCTTC 1 cut(s) 36
Eco31I GGTCTC 1 cut(s) 223
Eco47I GGWCC 2 cut(s) 194, 257
Eco88I CYCGRG 1 cut(s) 131
EcoNI CCTNNNNNAGG 1 cut(s) 201
EcoO109I RGGNCCY 1 cut(s) 257
Esp3I CGTCTC 1 cut(s) 55
FaiI YATR 2 cut(s) 128, 362
FaqI GGGAC 1 cut(s) 169
FauI CCCGC 1 cut(s) 74
Fnu4HI GCNGC 1 cut(s) 313
FokI GGATG 2 cut(s) 29, 366
Fsp4HI GCNGC 1 cut(s) 313
FspBI CTAG 1 cut(s) 198
GluI GCNGC 1 cut(s) 313
GsuI CTGGAG 1 cut(s) 180
HapII CCGG 5 cut(s) 114, 120, 132, 152, 318
HindIII AAGCTT 1 cut(s) 275
HinfI GANTC 2 cut(s) 62, 99
HpaII CCGG 5 cut(s) 114, 120, 132, 152, 318
HphI GGTGA 1 cut(s) 238
Hpy166II GTNNAC 2 cut(s) 6, 110
Hpy188III TCNNGA 1 cut(s) 120
Hpy8I GTNNAC 2 cut(s) 6, 110
HpyCH4III ACNGT 2 cut(s) 179, 238
HpyCH4V TGCA 2 cut(s) 56, 246
HpyF3I CTNAG 2 cut(s) 278, 291
Kpn2I TCCGGA 1 cut(s) 119
Kzo9I GATC 1 cut(s) 116
LmnI GCTCC 1 cut(s) 320
LpnPI CCDG 7 cut(s) 127, 133, 144, 145, 165, 300, 331
MaeI CTAG 1 cut(s) 198
MaeIII GTNAC 2 cut(s) 238, 263
MalI GATC 1 cut(s) 118
MbiI CCGCTC 2 cut(s) 81, 315
MboI GATC 1 cut(s) 116
MboII GAAGA 2 cut(s) 23, 385
MflI RGATCY 1 cut(s) 116
MnlI CCTC 6 cut(s) 56, 176, 197, 212, 332, 344
MroI TCCGGA 1 cut(s) 119
MseI TTAA 1 cut(s) 394
MspI CCGG 5 cut(s) 114, 120, 132, 152, 318
MspR9I CCNGG 5 cut(s) 114, 132, 133, 153, 319
NciI CCSGG 5 cut(s) 114, 132, 133, 153, 319
NdeII GATC 1 cut(s) 116
NlaIV GGNNCC 1 cut(s) 118
PfeI GAWTC 2 cut(s) 62, 99
PfoI TCCNGGA 1 cut(s) 317
PkrI GCNGC 1 cut(s) 314
PpuMI RGGWCCY 1 cut(s) 257
Psp5II RGGWCCY 1 cut(s) 257
PspN4I GGNNCC 1 cut(s) 118
PspPI GGNCC 2 cut(s) 194, 257
PspPPI RGGWCCY 1 cut(s) 257
PsuI RGATCY 1 cut(s) 116
RsaI GTAC 2 cut(s) 111, 358
RsaNI GTAC 2 cut(s) 110, 357
SaqAI TTAA 1 cut(s) 394
SatI GCNGC 1 cut(s) 313
Sau3AI GATC 1 cut(s) 116
Sau96I GGNCC 2 cut(s) 194, 257
ScrFI CCNGG 5 cut(s) 114, 132, 133, 153, 319
SetI ASST 6 cut(s) 70, 223, 262, 279, 284, 343
SinI GGWCC 2 cut(s) 194, 257
SmaI CCCGGG 1 cut(s) 133
SsiI CCGC 5 cut(s) 81, 201, 313, 333, 345
SspMI CTAG 1 cut(s) 198
StyD4I CCNGG 5 cut(s) 112, 130, 131, 151, 317
TaaI ACNGT 2 cut(s) 179, 238
TatI WGTACW 1 cut(s) 356
TauI GCSGC 1 cut(s) 315
TfiI GAWTC 2 cut(s) 62, 99
Tru1I TTAA 1 cut(s) 394
Tru9I TTAA 1 cut(s) 394
TspMI CCCGGG 1 cut(s) 131
VpaK11BI GGWCC 2 cut(s) 194, 257
XagI CCTNNNNNAGG 1 cut(s) 201
XmaI CCCGGG 1 cut(s) 131
XspI CTAG 1 cut(s) 198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.