AT2G19000

glycine-rich protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0010073
Physical Location & Seq
Forward (+)
8241104 .. 8241795
692 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G19000.1

Sequence Viewer

Length: 378 bp
ATGTTTACAAAATCAATCCTTTTACCTTTTCTTCTGGTAATCATCTTCGTCTCAGCATCTCAAGCTAGTCGTCAACTCTGGGATAGTGGAATCAGCGAGATGTTTGGTTCCAAATCCGGGTTTCATCATGGATTTTCCGGGTTTTCGGGGTCCTCTGGAGGTGCTGGAGGTGCTGGAGGATCATTCGGAGATATGATGAATGCTGGAGGTGCACATACATGCTCGGCGCAAGGAGCTTGTAGCGGTAAGAAGCTGACATGTCCCGAGGAGTGCTACAAATCAACCAACGTTAACAAGGATGGTTATAAAAGCACCAGCCGCAGTGGAGGATGTTCATTTGACTGTACGACCAAGTGTGCCGCGACTTGTTCAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

125

Amino Acids

12.76

Weight (kDa)

8.45

Isoelectric Point (pI)

44.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010073)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G61255 AT2G19000 AT4G21620 AT4G21620 AT5G60530
fragaria_vesca FvH4_3g04450
malus_domestica MD05G1323200.v1.1 MD10G1301000.v1.1
prunus_persica Prupe.4G039400_v2.0.a1
pyrus_communis pycom05g29750 pycom10g25390
rosa_chinensis RchiOBHm_Chr5g0006831
rosa_laevigata RLG00000031432
rosa_multiflora Rmu_co8368257.1_g000001 Rmu_sc0001044.1_g000036
rosa_roxburghii Rroxscaffold_1G00069220
rosa_rugosa Rorug04G0424800
rosa_samantha Rh5AG052500 Rh5BG051600 Rh5CG060100
rosa_wichuraiana Rw5G005210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 306
AccII CGCG 1 cut(s) 362
AciI CCGC 3 cut(s) 243, 319, 360
AclI AACGTT 1 cut(s) 288
AclWI GGATC 1 cut(s) 187
AfaI GTAC 1 cut(s) 346
AfiI CCNNNNNNNGG 1 cut(s) 117
AflIII ACRYGT 1 cut(s) 257
AgsI TTSAA 1 cut(s) 372
AluBI AGCT 3 cut(s) 65, 236, 253
AluI AGCT 3 cut(s) 65, 236, 253
Alw21I GWGCWC 1 cut(s) 214
Alw26I GTCTC 1 cut(s) 55
Alw44I GTGCAC 1 cut(s) 210
AlwI GGATC 1 cut(s) 187
Ama87I CYCGRG 1 cut(s) 263
ApaLI GTGCAC 1 cut(s) 210
AspLEI GCGC 1 cut(s) 229
AspS9I GGNCC 1 cut(s) 150
AsuC2I CCSGG 2 cut(s) 118, 139
AvaI CYCGRG 1 cut(s) 263
AvaII GGWCC 1 cut(s) 150
BaeGI GKGCMC 1 cut(s) 214
Bbv12I GWGCWC 1 cut(s) 214
BccI CCATC 1 cut(s) 293
BcnI CCSGG 2 cut(s) 118, 139
BcoDI GTCTC 1 cut(s) 55
BfaI CTAG 1 cut(s) 66
BisI GCNGC 2 cut(s) 319, 360
BlsI GCNGC 2 cut(s) 320, 361
Bme1390I CCNGG 2 cut(s) 118, 139
Bme18I GGWCC 1 cut(s) 150
BmeT110I CYCGRG 1 cut(s) 263
BmgT120I GGNCC 1 cut(s) 150
BmiI GGNNCC 2 cut(s) 109, 151
BmrFI CCNGG 2 cut(s) 118, 139
BmsI GCATC 1 cut(s) 65
BpmI CTGGAG 4 cut(s) 177, 186, 195, 225
BpuEI CTTGAG 1 cut(s) 45
BpuMI CCSGG 2 cut(s) 118, 139
BsaJI CCNNGG 1 cut(s) 264
Bsc4I CCNNNNNNNGG 1 cut(s) 117
BseDI CCNNGG 1 cut(s) 264
BseGI GGATG 2 cut(s) 304, 335
BseLI CCNNNNNNNGG 1 cut(s) 117
BseMII CTCAG 1 cut(s) 66
BseRI GAGGAG 1 cut(s) 281
BseSI GKGCMC 1 cut(s) 214
Bsh1236I CGCG 1 cut(s) 362
BsiHKAI GWGCWC 1 cut(s) 214
BsiHKCI CYCGRG 1 cut(s) 263
BsiSI CCGG 2 cut(s) 117, 138
BslFI GGGAC 1 cut(s) 246
BslI CCNNNNNNNGG 1 cut(s) 117
BsmAI GTCTC 1 cut(s) 55
BsmBI CGTCTC 1 cut(s) 55
BsmFI GGGAC 1 cut(s) 246
BsmI GAATGC 1 cut(s) 205
BsoBI CYCGRG 1 cut(s) 263
Bsp1286I GDGCHC 1 cut(s) 214
Bsp143I GATC 1 cut(s) 179
BspACI CCGC 3 cut(s) 243, 319, 360
BspCNI CTCAG 1 cut(s) 65
BspFNI CGCG 1 cut(s) 362
BspLI GGNNCC 2 cut(s) 109, 151
BspPI GGATC 1 cut(s) 187
BssECI CCNNGG 1 cut(s) 264
BssMI GATC 1 cut(s) 179
Bst4CI ACNGT 1 cut(s) 344
BstDEI CTNAG 1 cut(s) 52
BstF5I GGATG 2 cut(s) 304, 335
BstFNI CGCG 1 cut(s) 362
BstHHI GCGC 1 cut(s) 229
BstKTI GATC 1 cut(s) 182
BstMAI GTCTC 1 cut(s) 55
BstMBI GATC 1 cut(s) 179
BstMWI GCNNNNNNNGC 5 cut(s) 62, 170, 209, 233, 318
BstNSI RCATGY 2 cut(s) 222, 261
BstSCI CCNGG 2 cut(s) 116, 137
BstSLI GKGCMC 1 cut(s) 214
BstUI CGCG 1 cut(s) 362
BtsCI GGATG 2 cut(s) 304, 335
BtsI GCAGTG 1 cut(s) 328
BtsIMutI CAGTG 1 cut(s) 328
CfoI GCGC 1 cut(s) 229
Cfr13I GGNCC 1 cut(s) 150
Csp6I GTAC 1 cut(s) 345
CviAII CATG 3 cut(s) 128, 219, 258
CviJI RGCY 4 cut(s) 65, 236, 253, 318
CviKI_1 RGCY 4 cut(s) 65, 236, 253, 318
CviQI GTAC 1 cut(s) 345
DdeI CTNAG 1 cut(s) 52
DpnI GATC 1 cut(s) 181
DpnII GATC 1 cut(s) 179
Eco47I GGWCC 1 cut(s) 150
Eco88I CYCGRG 1 cut(s) 263
EcoO109I RGGNCCY 1 cut(s) 150
Esp3I CGTCTC 1 cut(s) 55
FaeI CATG 3 cut(s) 131, 222, 261
FaiI YATR 6 cut(s) 129, 194, 216, 220, 259, 306
FaqI GGGAC 1 cut(s) 246
FatI CATG 3 cut(s) 127, 218, 257
Fnu4HI GCNGC 2 cut(s) 319, 360
FokI GGATG 2 cut(s) 311, 342
Fsp4HI GCNGC 2 cut(s) 319, 360
FspBI CTAG 1 cut(s) 66
GlaI GCGC 1 cut(s) 228
GluI GCNGC 2 cut(s) 319, 360
GsuI CTGGAG 4 cut(s) 177, 186, 195, 225
HapII CCGG 2 cut(s) 117, 138
HhaI GCGC 1 cut(s) 229
Hin1II CATG 3 cut(s) 131, 222, 261
Hin6I GCGC 1 cut(s) 227
HinP1I GCGC 1 cut(s) 227
HincII GTYRAC 2 cut(s) 74, 292
HindII GTYRAC 2 cut(s) 74, 292
HinfI GANTC 1 cut(s) 90
HpaI GTTAAC 1 cut(s) 292
HpaII CCGG 2 cut(s) 117, 138
Hpy166II GTNNAC 4 cut(s) 6, 74, 212, 292
Hpy188I TCNGA 1 cut(s) 188
Hpy188III TCNNGA 2 cut(s) 156, 263
Hpy8I GTNNAC 4 cut(s) 6, 74, 212, 292
HpyCH4III ACNGT 1 cut(s) 344
HpyCH4IV ACGT 1 cut(s) 288
HpyCH4V TGCA 1 cut(s) 212
HpyF10VI GCNNNNNNNGC 5 cut(s) 62, 170, 209, 233, 318
HpyF3I CTNAG 1 cut(s) 52
HpySE526I ACGT 1 cut(s) 288
Hsp92II CATG 3 cut(s) 131, 222, 261
HspAI GCGC 1 cut(s) 227
KspAI GTTAAC 1 cut(s) 292
Kzo9I GATC 1 cut(s) 179
LmnI GCTCC 1 cut(s) 233
LpnPI CCDG 9 cut(s) 20, 64, 130, 141, 150, 151, 159, 189, 328
LweI GCATC 1 cut(s) 65
MaeI CTAG 1 cut(s) 66
MaeII ACGT 1 cut(s) 288
MalI GATC 1 cut(s) 181
MboI GATC 1 cut(s) 179
MboII GAAGA 2 cut(s) 23, 37
MhlI GDGCHC 1 cut(s) 214
MluCI AATT 1 cut(s) 373
MnlI CCTC 7 cut(s) 152, 161, 163, 170, 200, 259, 320
MseI TTAA 2 cut(s) 291, 376
MslI CAYNNNNRTG 1 cut(s) 217
MspI CCGG 2 cut(s) 117, 138
MspR9I CCNGG 2 cut(s) 118, 139
Mva1269I GAATGC 1 cut(s) 205
MvnI CGCG 1 cut(s) 362
MwoI GCNNNNNNNGC 5 cut(s) 62, 170, 209, 233, 318
NciI CCSGG 2 cut(s) 118, 139
NdeII GATC 1 cut(s) 179
NlaIII CATG 3 cut(s) 131, 222, 261
NlaIV GGNNCC 2 cut(s) 109, 151
NmeAIII GCCGAG 1 cut(s) 203
NspI RCATGY 2 cut(s) 222, 261
PciI ACATGT 1 cut(s) 257
PctI GAATGC 1 cut(s) 205
PfeI GAWTC 1 cut(s) 90
PkrI GCNGC 2 cut(s) 320, 361
PpuMI RGGWCCY 1 cut(s) 150
PscI ACATGT 1 cut(s) 257
PsiI TTATAA 1 cut(s) 306
Psp1406I AACGTT 1 cut(s) 288
Psp5II RGGWCCY 1 cut(s) 150
PspN4I GGNNCC 2 cut(s) 109, 151
PspPI GGNCC 1 cut(s) 150
PspPPI RGGWCCY 1 cut(s) 150
RsaI GTAC 1 cut(s) 346
RsaNI GTAC 1 cut(s) 345
RseI CAYNNNNRTG 1 cut(s) 217
SaqAI TTAA 2 cut(s) 291, 376
SatI GCNGC 2 cut(s) 319, 360
Sau3AI GATC 1 cut(s) 179
Sau96I GGNCC 1 cut(s) 150
ScrFI CCNGG 2 cut(s) 118, 139
SduI GDGCHC 1 cut(s) 214
SetI ASST 8 cut(s) 28, 67, 163, 172, 211, 238, 255, 291
SfaNI GCATC 1 cut(s) 65
SinI GGWCC 1 cut(s) 150
SmiMI CAYNNNNRTG 1 cut(s) 217
SmlI CTYRAG 1 cut(s) 60
SmoI CTYRAG 1 cut(s) 60
Sse9I AATT 1 cut(s) 373
SsiI CCGC 3 cut(s) 243, 319, 360
SspMI CTAG 1 cut(s) 66
StyD4I CCNGG 2 cut(s) 116, 137
TaaI ACNGT 1 cut(s) 344
TaiI ACGT 1 cut(s) 291
TasI AATT 1 cut(s) 373
TauI GCSGC 2 cut(s) 321, 362
TfiI GAWTC 1 cut(s) 90
Tru1I TTAA 2 cut(s) 291, 376
Tru9I TTAA 2 cut(s) 291, 376
TscAI CASTG 1 cut(s) 328
TspDTI ATGAA 3 cut(s) 113, 212, 324
TspRI CASTG 1 cut(s) 328
VneI GTGCAC 1 cut(s) 210
VpaK11BI GGWCC 1 cut(s) 150
XceI RCATGY 2 cut(s) 222, 261
XspI CTAG 1 cut(s) 66
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.