pycom05g29750

glycine-rich cell wall structural protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0010073
Physical Location & Seq
Reverse (-)
30129513 .. 30129959
447 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g29750.1

Sequence Viewer

Length: 447 bp
ATGATCCCAATAGCAAGTCTTTTCCTAGTCACTTTGCTCCTCACTGCTTCACTTGGCATCTCAGCCCGACCCGGATCGGATGGACCCTTCTCAGCTGAGCTCAAGCACTCAAAGGACAAAGGTGGTGCTGCTACTGGTGGCGGCAATGGTGGCTTTGGCGGGTTTGTCCCGCCAGGGTTTGACATACCCGGGTTCGGAAAGGGGTTCGGAAACGGCGTAGGTGGCGGGTATGGAGGAGGGTATGGAGGTCCTATTGGAGGGCATTCCAAGGGTGGAACTGTGAGGACTTCTCTTGTGTGTAAGGAAAAGGGTCCGTGCTACAAGAAGAAGCTGACGTGCCCTGCTAAGTGCTTCACTTCCTACAGCCGGTCAGGGAAGGGTTATGGCGGCGGTGGCGGAGGCGGCGGGTGCACTATAGATTGCAAGAAGTGTACTGCCTACTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

149

Amino Acids

14.46

Weight (kDa)

9.42

Isoelectric Point (pI)

26.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010073)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G61255 AT2G19000 AT4G21620 AT4G21620 AT5G60530
fragaria_vesca FvH4_3g04450
malus_domestica MD05G1323200.v1.1 MD10G1301000.v1.1
prunus_persica Prupe.4G039400_v2.0.a1
pyrus_communis pycom05g29750 pycom10g25390
rosa_chinensis RchiOBHm_Chr5g0006831
rosa_laevigata RLG00000031432
rosa_multiflora Rmu_co8368257.1_g000001 Rmu_sc0001044.1_g000036
rosa_roxburghii Rroxscaffold_1G00069220
rosa_rugosa Rorug04G0424800
rosa_samantha Rh5AG052500 Rh5BG051600 Rh5CG060100
rosa_wichuraiana Rw5G005210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 9 cut(s) 141, 159, 170, 225, 387, 390, 396, 402, 405
AclWI GGATC 1 cut(s) 82
AfaI GTAC 1 cut(s) 433
AfiI CCNNNNNNNGG 3 cut(s) 194, 257, 366
AjiI CACGTC 1 cut(s) 336
AjnI CCWGG 1 cut(s) 172
AluBI AGCT 3 cut(s) 95, 100, 331
AluI AGCT 3 cut(s) 95, 100, 331
Alw21I GWGCWC 2 cut(s) 102, 413
Alw44I GTGCAC 1 cut(s) 409
AlwI GGATC 1 cut(s) 82
Ama87I CYCGRG 1 cut(s) 188
ApaLI GTGCAC 1 cut(s) 409
ApeKI GCWGC 1 cut(s) 128
AspS9I GGNCC 3 cut(s) 83, 248, 311
AsuC2I CCSGG 3 cut(s) 72, 189, 190
AvaI CYCGRG 1 cut(s) 188
AvaII GGWCC 3 cut(s) 83, 248, 311
BaeGI GKGCMC 2 cut(s) 341, 413
BanII GRGCYC 1 cut(s) 102
Bbv12I GWGCWC 2 cut(s) 102, 413
BbvI GCAGC 1 cut(s) 115
BccI CCATC 1 cut(s) 74
BceAI ACGGC 1 cut(s) 229
BciT130I CCWGG 1 cut(s) 174
BcnI CCSGG 3 cut(s) 72, 189, 190
BfaI CTAG 2 cut(s) 26, 445
BfmI CTRYAG 2 cut(s) 361, 414
BisI GCNGC 4 cut(s) 129, 142, 388, 403
BlpI GCTNAGC 1 cut(s) 96
BlsI GCNGC 4 cut(s) 130, 143, 389, 404
Bme1390I CCNGG 4 cut(s) 72, 174, 189, 190
Bme18I GGWCC 3 cut(s) 83, 248, 311
BmeT110I CYCGRG 1 cut(s) 188
BmgBI CACGTC 1 cut(s) 336
BmgT120I GGNCC 3 cut(s) 83, 248, 311
BmiI GGNNCC 2 cut(s) 85, 312
BmrFI CCNGG 4 cut(s) 72, 174, 189, 190
BmsI GCATC 1 cut(s) 66
BplI GAGNNNNNCTC 2 cut(s) 274, 306
Bpu1102I GCTNAGC 1 cut(s) 96
BpuEI CTTGAG 1 cut(s) 86
BpuMI CCSGG 3 cut(s) 72, 189, 190
BsaJI CCNNGG 3 cut(s) 173, 188, 267
Bsc4I CCNNNNNNNGG 3 cut(s) 194, 257, 366
Bse118I RCCGGY 1 cut(s) 366
Bse1I ACTGG 1 cut(s) 139
Bse3DI GCAATG 1 cut(s) 151
BseBI CCWGG 1 cut(s) 174
BseDI CCNNGG 3 cut(s) 173, 188, 267
BseGI GGATG 1 cut(s) 85
BseLI CCNNNNNNNGG 3 cut(s) 194, 257, 366
BseMI GCAATG 1 cut(s) 151
BseMII CTCAG 3 cut(s) 75, 87, 105
BseNI ACTGG 1 cut(s) 139
BseRI GAGGAG 2 cut(s) 29, 249
BseSI GKGCMC 2 cut(s) 341, 413
BseXI GCAGC 1 cut(s) 115
BsiHKAI GWGCWC 2 cut(s) 102, 413
BsiHKCI CYCGRG 1 cut(s) 188
BsiSI CCGG 3 cut(s) 72, 189, 367
BslFI GGGAC 1 cut(s) 152
BslI CCNNNNNNNGG 3 cut(s) 194, 257, 366
BsmFI GGGAC 1 cut(s) 152
BsmI GAATGC 1 cut(s) 262
BsoBI CYCGRG 1 cut(s) 188
Bsp1286I GDGCHC 3 cut(s) 102, 341, 413
Bsp143I GATC 2 cut(s) 3, 74
Bsp1720I GCTNAGC 1 cut(s) 96
BspACI CCGC 9 cut(s) 141, 159, 170, 225, 387, 390, 396, 402, 405
BspCNI CTCAG 3 cut(s) 74, 88, 104
BspLI GGNNCC 2 cut(s) 85, 312
BspPI GGATC 1 cut(s) 82
BsrDI GCAATG 1 cut(s) 151
BsrFI RCCGGY 1 cut(s) 366
BsrI ACTGG 1 cut(s) 139
BssAI RCCGGY 1 cut(s) 366
BssECI CCNNGG 3 cut(s) 173, 188, 267
BssMI GATC 2 cut(s) 3, 74
BssT1I CCWWGG 1 cut(s) 267
Bst2UI CCWGG 1 cut(s) 174
Bst4CI ACNGT 1 cut(s) 280
BstDEI CTNAG 4 cut(s) 61, 91, 96, 345
BstENI CCTNNNNNAGG 1 cut(s) 255
BstF5I GGATG 1 cut(s) 85
BstKTI GATC 2 cut(s) 6, 77
BstMBI GATC 2 cut(s) 3, 74
BstMWI GCNNNNNNNGC 5 cut(s) 150, 222, 393, 402, 408
BstNI CCWGG 1 cut(s) 174
BstSCI CCNGG 4 cut(s) 70, 172, 187, 188
BstSFI CTRYAG 2 cut(s) 361, 414
BstSLI GKGCMC 2 cut(s) 341, 413
BstV1I GCAGC 1 cut(s) 115
BtrI CACGTC 1 cut(s) 336
BtsCI GGATG 1 cut(s) 85
BtsI GCAGTG 1 cut(s) 42
BtsIMutI CAGTG 1 cut(s) 42
Cfr10I RCCGGY 1 cut(s) 366
Cfr13I GGNCC 3 cut(s) 83, 248, 311
Cfr9I CCCGGG 1 cut(s) 188
Csp6I GTAC 1 cut(s) 432
CviJI RGCY 6 cut(s) 65, 95, 100, 153, 331, 366
CviKI_1 RGCY 6 cut(s) 65, 95, 100, 153, 331, 366
CviQI GTAC 1 cut(s) 432
DdeI CTNAG 4 cut(s) 61, 91, 96, 345
DpnI GATC 2 cut(s) 5, 76
DpnII GATC 2 cut(s) 3, 74
EciI GGCGGA 1 cut(s) 411
Ecl136II GAGCTC 1 cut(s) 100
Eco130I CCWWGG 1 cut(s) 267
Eco24I GRGCYC 1 cut(s) 102
Eco47I GGWCC 3 cut(s) 83, 248, 311
Eco53kI GAGCTC 1 cut(s) 100
Eco88I CYCGRG 1 cut(s) 188
EcoICRI GAGCTC 1 cut(s) 100
EcoNI CCTNNNNNAGG 1 cut(s) 255
EcoO109I RGGNCCY 1 cut(s) 248
EcoRII CCWGG 1 cut(s) 172
EcoT14I CCWWGG 1 cut(s) 267
EcoT38I GRGCYC 1 cut(s) 102
ErhI CCWWGG 1 cut(s) 267
FaiI YATR 5 cut(s) 185, 231, 243, 384, 416
FaqI GGGAC 1 cut(s) 152
FauI CCCGC 4 cut(s) 152, 177, 218, 398
Fnu4HI GCNGC 4 cut(s) 129, 142, 388, 403
FokI GGATG 1 cut(s) 92
FriOI GRGCYC 1 cut(s) 102
Fsp4HI GCNGC 4 cut(s) 129, 142, 388, 403
FspBI CTAG 2 cut(s) 26, 445
GluI GCNGC 4 cut(s) 129, 142, 388, 403
HapII CCGG 3 cut(s) 72, 189, 367
HpaII CCGG 3 cut(s) 72, 189, 367
Hpy166II GTNNAC 2 cut(s) 411, 432
Hpy188I TCNGA 3 cut(s) 79, 197, 209
Hpy8I GTNNAC 2 cut(s) 411, 432
HpyAV CCTTC 2 cut(s) 97, 370
HpyCH4III ACNGT 1 cut(s) 280
HpyCH4IV ACGT 1 cut(s) 335
HpyCH4V TGCA 2 cut(s) 411, 423
HpyF10VI GCNNNNNNNGC 5 cut(s) 150, 222, 393, 402, 408
HpyF3I CTNAG 4 cut(s) 61, 91, 96, 345
HpySE526I ACGT 1 cut(s) 335
Kzo9I GATC 2 cut(s) 3, 74
LmnI GCTCC 1 cut(s) 42
LpnPI CCDG 8 cut(s) 85, 120, 159, 186, 202, 354, 357, 380
Lsp1109I GCAGC 1 cut(s) 115
LweI GCATC 1 cut(s) 66
MaeI CTAG 2 cut(s) 26, 445
MaeII ACGT 1 cut(s) 335
MaeIII GTNAC 1 cut(s) 28
MalI GATC 2 cut(s) 5, 76
MboI GATC 2 cut(s) 3, 74
MboII GAAGA 1 cut(s) 337
MhlI GDGCHC 3 cut(s) 102, 341, 413
MnlI CCTC 7 cut(s) 50, 227, 230, 239, 251, 276, 392
MspA1I CMGCKG 1 cut(s) 95
MspI CCGG 3 cut(s) 72, 189, 367
MspR9I CCNGG 4 cut(s) 72, 174, 189, 190
Mva1269I GAATGC 1 cut(s) 262
MvaI CCWGG 1 cut(s) 174
MwoI GCNNNNNNNGC 5 cut(s) 150, 222, 393, 402, 408
NciI CCSGG 3 cut(s) 72, 189, 190
NdeII GATC 2 cut(s) 3, 74
NlaIV GGNNCC 2 cut(s) 85, 312
NmuCI GTSAC 1 cut(s) 28
PcsI WCGNNNNNNNCGW 1 cut(s) 213
PctI GAATGC 1 cut(s) 262
PkrI GCNGC 4 cut(s) 130, 143, 389, 404
PpuMI RGGWCCY 1 cut(s) 248
Psp124BI GAGCTC 1 cut(s) 102
Psp5II RGGWCCY 1 cut(s) 248
Psp6I CCWGG 1 cut(s) 172
PspGI CCWGG 1 cut(s) 172
PspN4I GGNNCC 2 cut(s) 85, 312
PspPI GGNCC 3 cut(s) 83, 248, 311
PspPPI RGGWCCY 1 cut(s) 248
PvuII CAGCTG 1 cut(s) 95
RsaI GTAC 1 cut(s) 433
RsaNI GTAC 1 cut(s) 432
SacI GAGCTC 1 cut(s) 102
SatI GCNGC 4 cut(s) 129, 142, 388, 403
Sau3AI GATC 2 cut(s) 3, 74
Sau96I GGNCC 3 cut(s) 83, 248, 311
ScrFI CCNGG 4 cut(s) 72, 174, 189, 190
SduI GDGCHC 3 cut(s) 102, 341, 413
SetI ASST 7 cut(s) 97, 102, 124, 223, 250, 333, 338
SfaNI GCATC 1 cut(s) 66
SfcI CTRYAG 2 cut(s) 361, 414
SinI GGWCC 3 cut(s) 83, 248, 311
SmaI CCCGGG 1 cut(s) 190
SmlI CTYRAG 1 cut(s) 101
SmoI CTYRAG 1 cut(s) 101
SsiI CCGC 9 cut(s) 141, 159, 170, 225, 387, 390, 396, 402, 405
SspMI CTAG 2 cut(s) 26, 445
SstI GAGCTC 1 cut(s) 102
StyD4I CCNGG 4 cut(s) 70, 172, 187, 188
StyI CCWWGG 1 cut(s) 267
TaaI ACNGT 1 cut(s) 280
TaiI ACGT 1 cut(s) 338
TatI WGTACW 1 cut(s) 431
TauI GCSGC 3 cut(s) 144, 390, 405
TscAI CASTG 1 cut(s) 49
TseFI GTSAC 1 cut(s) 28
TseI GCWGC 1 cut(s) 128
Tsp45I GTSAC 1 cut(s) 28
TspGWI ACGGA 1 cut(s) 303
TspMI CCCGGG 1 cut(s) 188
TspRI CASTG 1 cut(s) 49
VneI GTGCAC 1 cut(s) 409
VpaK11BI GGWCC 3 cut(s) 83, 248, 311
XagI CCTNNNNNAGG 1 cut(s) 255
XmaI CCCGGG 1 cut(s) 188
XspI CTAG 2 cut(s) 26, 445
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.