Rh5BG051600

glycine-rich cell wall structural protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0010073
Physical Location & Seq
Forward (+)
4096771 .. 4097238
468 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG051600.1

Sequence Viewer

Length: 468 bp
ATGATCCCAACAAGTCTTCTCTTGGCAACTTTGATCCTCACTGCTTCACTTGGTCGCTTGTCTGCCCGACCTGAGTCCACCGGAGCCTTCTCAGCTGAGCTCAAGCACTCAAACAACAAGAACAAGGGTGGTGGAGCTGGTGGCAATAATGGTGGTGGAAACAATGGCGGCGGCGGCGGCATGGGAGGGTTCTTTGGGCCCGGAGGTGGGTTTGACATACCCGGATTTGGAAAGGGCTTTGGAGGCGGCTATGGTGGAGGGTACGGCGGTCCGAGCGGAGGCTCCTCCAAGGGTGGTATCGTGAGGCCTACTCAGGTGTGCAAAGAAAAGGGTCCTTGCTTCAACAAGAAGCTGACATGTCCCGCTAAGTGCTTCACCTCCTACAGCCGCTCAGGGAAGGGCTACGGCGGCGGCGGCGGAGGCGGTGGGTGCACCATCGACTGCAAGAAGTGTACTGCTTATTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

155

Amino Acids

14.95

Weight (kDa)

9.55

Isoelectric Point (pI)

39.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010073)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G61255 AT2G19000 AT4G21620 AT4G21620 AT5G60530
fragaria_vesca FvH4_3g04450
malus_domestica MD05G1323200.v1.1 MD10G1301000.v1.1
prunus_persica Prupe.4G039400_v2.0.a1
pyrus_communis pycom05g29750 pycom10g25390
rosa_chinensis RchiOBHm_Chr5g0006831
rosa_laevigata RLG00000031432
rosa_multiflora Rmu_co8368257.1_g000001 Rmu_sc0001044.1_g000036
rosa_roxburghii Rroxscaffold_1G00069220
rosa_rugosa Rorug04G0424800
rosa_samantha Rh5AG052500 Rh5BG051600 Rh5CG060100
rosa_wichuraiana Rw5G005210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 276, 390
AclWI GGATC 1 cut(s) 28
AfaI GTAC 2 cut(s) 263, 454
AfiI CCNNNNNNNGG 4 cut(s) 206, 207, 227, 278
AflIII ACRYGT 1 cut(s) 356
AgsI TTSAA 1 cut(s) 343
AluBI AGCT 4 cut(s) 95, 100, 137, 352
AluI AGCT 4 cut(s) 95, 100, 137, 352
Alw21I GWGCWC 2 cut(s) 102, 434
Alw44I GTGCAC 1 cut(s) 430
AlwI GGATC 1 cut(s) 28
AoxI GGCC 2 cut(s) 197, 305
ApaI GGGCCC 1 cut(s) 201
ApaLI GTGCAC 1 cut(s) 430
AspS9I GGNCC 4 cut(s) 197, 198, 269, 332
AsuC2I CCSGG 2 cut(s) 201, 222
AsuHPI GGTGA 1 cut(s) 367
AvaII GGWCC 2 cut(s) 269, 332
BaeGI GKGCMC 2 cut(s) 201, 434
BaeI ACNNNNGTAYC 2 cut(s) 253, 286
BanII GRGCYC 2 cut(s) 102, 201
BbsI GAAGAC 1 cut(s) 8
Bbv12I GWGCWC 2 cut(s) 102, 434
BccI CCATC 1 cut(s) 443
BceAI ACGGC 2 cut(s) 280, 421
BcnI CCSGG 2 cut(s) 201, 222
BfaI CTAG 1 cut(s) 466
BfmI CTRYAG 1 cut(s) 382
BisI GCNGC 9 cut(s) 169, 172, 175, 178, 247, 388, 409, 412, 415
BlpI GCTNAGC 1 cut(s) 96
BlsI GCNGC 9 cut(s) 170, 173, 176, 179, 248, 389, 410, 413, 416
Bme1390I CCNGG 2 cut(s) 201, 222
Bme18I GGWCC 2 cut(s) 269, 332
BmgT120I GGNCC 4 cut(s) 197, 198, 269, 332
BmiI GGNNCC 4 cut(s) 85, 199, 283, 333
BmrFI CCNGG 2 cut(s) 201, 222
BoxI GACNNNNGTC 1 cut(s) 73
BpiI GAAGAC 1 cut(s) 8
BplI GAGNNNNNCTC 2 cut(s) 295, 327
Bpu10I CCTNAGC 1 cut(s) 391
Bpu1102I GCTNAGC 1 cut(s) 96
BpuEI CTTGAG 1 cut(s) 86
BpuMI CCSGG 2 cut(s) 201, 222
BsaJI CCNNGG 1 cut(s) 288
BsaWI WCCGGW 1 cut(s) 80
Bsc4I CCNNNNNNNGG 4 cut(s) 206, 207, 227, 278
BseDI CCNNGG 1 cut(s) 288
BseLI CCNNNNNNNGG 4 cut(s) 206, 207, 227, 278
BseMII CTCAG 5 cut(s) 63, 87, 105, 326, 405
BseRI GAGGAG 1 cut(s) 274
BseSI GKGCMC 2 cut(s) 201, 434
BshFI GGCC 2 cut(s) 199, 307
BsiHKAI GWGCWC 2 cut(s) 102, 434
BsiSI CCGG 3 cut(s) 81, 201, 222
BslFI GGGAC 1 cut(s) 345
BslI CCNNNNNNNGG 4 cut(s) 206, 207, 227, 278
BsmFI GGGAC 1 cut(s) 345
BsnI GGCC 2 cut(s) 199, 307
Bsp120I GGGCCC 1 cut(s) 197
Bsp1286I GDGCHC 3 cut(s) 102, 201, 434
Bsp143I GATC 2 cut(s) 3, 33
Bsp1720I GCTNAGC 1 cut(s) 96
BspANI GGCC 2 cut(s) 199, 307
BspCNI CTCAG 5 cut(s) 64, 88, 104, 325, 404
BspLI GGNNCC 4 cut(s) 85, 199, 283, 333
BspPI GGATC 1 cut(s) 28
BsrBI CCGCTC 2 cut(s) 276, 390
BssECI CCNNGG 1 cut(s) 288
BssMI GATC 2 cut(s) 3, 33
BssT1I CCWWGG 1 cut(s) 288
BstDEI CTNAG 6 cut(s) 72, 91, 96, 312, 366, 391
BstKTI GATC 2 cut(s) 6, 36
BstMBI GATC 2 cut(s) 3, 33
BstMWI GCNNNNNNNGC 9 cut(s) 92, 174, 177, 243, 273, 408, 414, 420, 429
BstNSI RCATGY 1 cut(s) 360
BstPAI GACNNNNGTC 1 cut(s) 73
BstSCI CCNGG 2 cut(s) 199, 220
BstSFI CTRYAG 1 cut(s) 382
BstSLI GKGCMC 2 cut(s) 201, 434
BstV2I GAAGAC 1 cut(s) 8
BsuRI GGCC 2 cut(s) 199, 307
BtsI GCAGTG 1 cut(s) 39
BtsIMutI CAGTG 1 cut(s) 39
Cfr13I GGNCC 4 cut(s) 197, 198, 269, 332
CpoI CGGWCCG 1 cut(s) 269
Csp6I GTAC 2 cut(s) 262, 453
CspCI CAANNNNNGTGG 4 cut(s) 112, 133, 147, 168
CspI CGGWCCG 1 cut(s) 269
CviAII CATG 2 cut(s) 181, 357
CviQI GTAC 2 cut(s) 262, 453
DdeI CTNAG 6 cut(s) 72, 91, 96, 312, 366, 391
DpnI GATC 2 cut(s) 5, 35
DpnII GATC 2 cut(s) 3, 33
EciI GGCGGA 1 cut(s) 432
Ecl136II GAGCTC 1 cut(s) 100
Eco130I CCWWGG 1 cut(s) 288
Eco147I AGGCCT 1 cut(s) 307
Eco24I GRGCYC 2 cut(s) 102, 201
Eco47I GGWCC 2 cut(s) 269, 332
Eco53kI GAGCTC 1 cut(s) 100
EcoICRI GAGCTC 1 cut(s) 100
EcoO109I RGGNCCY 1 cut(s) 332
EcoT14I CCWWGG 1 cut(s) 288
EcoT38I GRGCYC 2 cut(s) 102, 201
ErhI CCWWGG 1 cut(s) 288
FaeI CATG 2 cut(s) 184, 360
FaiI YATR 4 cut(s) 182, 218, 252, 358
FaqI GGGAC 1 cut(s) 345
FatI CATG 2 cut(s) 180, 356
FauI CCCGC 1 cut(s) 370
Fnu4HI GCNGC 9 cut(s) 169, 172, 175, 178, 247, 388, 409, 412, 415
FriOI GRGCYC 2 cut(s) 102, 201
Fsp4HI GCNGC 9 cut(s) 169, 172, 175, 178, 247, 388, 409, 412, 415
FspBI CTAG 1 cut(s) 466
GluI GCNGC 9 cut(s) 169, 172, 175, 178, 247, 388, 409, 412, 415
HaeIII GGCC 2 cut(s) 199, 307
HapII CCGG 3 cut(s) 81, 201, 222
Hin1II CATG 2 cut(s) 184, 360
HinfI GANTC 1 cut(s) 74
HpaII CCGG 3 cut(s) 81, 201, 222
HphI GGTGA 1 cut(s) 367
Hpy166II GTNNAC 3 cut(s) 78, 432, 453
Hpy188I TCNGA 1 cut(s) 273
Hpy188III TCNNGA 1 cut(s) 301
Hpy8I GTNNAC 3 cut(s) 78, 432, 453
HpyAV CCTTC 2 cut(s) 97, 391
HpyCH4V TGCA 3 cut(s) 321, 432, 444
HpyF10VI GCNNNNNNNGC 9 cut(s) 92, 174, 177, 243, 273, 408, 414, 420, 429
HpyF3I CTNAG 6 cut(s) 72, 91, 96, 312, 366, 391
Hsp92II CATG 2 cut(s) 184, 360
Kzo9I GATC 2 cut(s) 3, 33
LmnI GCTCC 3 cut(s) 83, 134, 287
LpnPI CCDG 7 cut(s) 84, 94, 123, 214, 235, 299, 378
MaeI CTAG 1 cut(s) 466
MalI GATC 2 cut(s) 5, 35
MbiI CCGCTC 2 cut(s) 276, 390
MboI GATC 2 cut(s) 3, 33
MboII GAAGA 1 cut(s) 8
MhlI GDGCHC 3 cut(s) 102, 201, 434
MlyI GAGTC 1 cut(s) 83
MspA1I CMGCKG 1 cut(s) 95
MspI CCGG 3 cut(s) 81, 201, 222
MspR9I CCNGG 2 cut(s) 201, 222
MwoI GCNNNNNNNGC 9 cut(s) 92, 174, 177, 243, 273, 408, 414, 420, 429
NciI CCSGG 2 cut(s) 201, 222
NdeII GATC 2 cut(s) 3, 33
NlaIII CATG 2 cut(s) 184, 360
NlaIV GGNNCC 4 cut(s) 85, 199, 283, 333
NspI RCATGY 1 cut(s) 360
PceI AGGCCT 1 cut(s) 307
PciI ACATGT 1 cut(s) 356
PkrI GCNGC 9 cut(s) 170, 173, 176, 179, 248, 389, 410, 413, 416
PleI GAGTC 1 cut(s) 82
PpsI GAGTC 1 cut(s) 82
PpuMI RGGWCCY 1 cut(s) 332
PscI ACATGT 1 cut(s) 356
PshAI GACNNNNGTC 1 cut(s) 73
Psp124BI GAGCTC 1 cut(s) 102
Psp5II RGGWCCY 1 cut(s) 332
PspN4I GGNNCC 4 cut(s) 85, 199, 283, 333
PspOMI GGGCCC 1 cut(s) 197
PspPI GGNCC 4 cut(s) 197, 198, 269, 332
PspPPI RGGWCCY 1 cut(s) 332
PvuII CAGCTG 1 cut(s) 95
RsaI GTAC 2 cut(s) 263, 454
RsaNI GTAC 2 cut(s) 262, 453
Rsr2I CGGWCCG 1 cut(s) 269
RsrII CGGWCCG 1 cut(s) 269
SacI GAGCTC 1 cut(s) 102
SatI GCNGC 9 cut(s) 169, 172, 175, 178, 247, 388, 409, 412, 415
Sau3AI GATC 2 cut(s) 3, 33
Sau96I GGNCC 4 cut(s) 197, 198, 269, 332
SchI GAGTC 1 cut(s) 83
ScrFI CCNGG 2 cut(s) 201, 222
SduI GDGCHC 3 cut(s) 102, 201, 434
SetI ASST 8 cut(s) 73, 97, 102, 139, 208, 318, 354, 380
SfcI CTRYAG 1 cut(s) 382
SinI GGWCC 2 cut(s) 269, 332
SmlI CTYRAG 1 cut(s) 101
SmoI CTYRAG 1 cut(s) 101
SseBI AGGCCT 1 cut(s) 307
SspMI CTAG 1 cut(s) 466
SstI GAGCTC 1 cut(s) 102
StuI AGGCCT 1 cut(s) 307
StyD4I CCNGG 2 cut(s) 199, 220
StyI CCWWGG 1 cut(s) 288
TaqI TCGA 1 cut(s) 438
TatI WGTACW 1 cut(s) 452
TauI GCSGC 9 cut(s) 171, 174, 177, 180, 249, 390, 411, 414, 417
TscAI CASTG 1 cut(s) 46
TspRI CASTG 1 cut(s) 46
VneI GTGCAC 1 cut(s) 430
VpaK11BI GGWCC 2 cut(s) 269, 332
XceI RCATGY 1 cut(s) 360
XspI CTAG 1 cut(s) 466
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.