Rh5CG060100

glycine-rich cell wall structural protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0010073
Physical Location & Seq
Forward (+)
4438246 .. 4438701
456 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG060100.1

Sequence Viewer

Length: 456 bp
ATGATCCCAACAACAAGTCTTCTCTTGGCAACTTTGATCCTCACTGCTTCACTTGGTGGCTTGTCTGCCCGACCTGAGTCCACCGGAGCCTTCTCAGCTGAGCTCAAGCACTCAAACAACAAGAACAAAGGTGGTGGAGCTGGTGGCAATAATGGTGGCGGTGGCGGCATGGGAGGGTTCTTTGGGCCCGGAGGTGGGTTTGACATACCCGGGTTTGGAAAGGGCTTTGGAGGCGGCTATGGTGGAGGGTACGGCGGTCCGAGCGGAGGCTCCTCCAAGGGTGGTATCGTGAGGCCTACTCAGGTGTGCAAAGAAAAGGGTCCTTGCTTGAACAAGAAGCTGACATGTCCTGCTAAGTGCTTCACCTCCTACAGCCGCTCAGGGAAGGGCTACGGCGGCGGCGGCGGAGGCGGTGGGTGCACCATCGACTGCAAGAAGTGTACTGCTTATTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

151

Amino Acids

14.52

Weight (kDa)

9.46

Isoelectric Point (pI)

42.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010073)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G61255 AT2G19000 AT4G21620 AT4G21620 AT5G60530
fragaria_vesca FvH4_3g04450
malus_domestica MD05G1323200.v1.1 MD10G1301000.v1.1
prunus_persica Prupe.4G039400_v2.0.a1
pyrus_communis pycom05g29750 pycom10g25390
rosa_chinensis RchiOBHm_Chr5g0006831
rosa_laevigata RLG00000031432
rosa_multiflora Rmu_co8368257.1_g000001 Rmu_sc0001044.1_g000036
rosa_roxburghii Rroxscaffold_1G00069220
rosa_rugosa Rorug04G0424800
rosa_samantha Rh5AG052500 Rh5BG051600 Rh5CG060100
rosa_wichuraiana Rw5G005210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 264, 378
AclWI GGATC 1 cut(s) 31
AdeI CACNNNGTG 1 cut(s) 56
AfaI GTAC 2 cut(s) 251, 442
AfiI CCNNNNNNNGG 4 cut(s) 194, 195, 215, 266
AflIII ACRYGT 1 cut(s) 344
AgsI TTSAA 1 cut(s) 331
AluBI AGCT 4 cut(s) 98, 103, 140, 340
AluI AGCT 4 cut(s) 98, 103, 140, 340
Alw21I GWGCWC 2 cut(s) 105, 422
Alw44I GTGCAC 1 cut(s) 418
AlwI GGATC 1 cut(s) 31
Ama87I CYCGRG 1 cut(s) 209
AoxI GGCC 2 cut(s) 185, 293
ApaI GGGCCC 1 cut(s) 189
ApaLI GTGCAC 1 cut(s) 418
AspS9I GGNCC 4 cut(s) 185, 186, 257, 320
AsuC2I CCSGG 3 cut(s) 189, 210, 211
AsuHPI GGTGA 1 cut(s) 355
AvaI CYCGRG 1 cut(s) 209
AvaII GGWCC 2 cut(s) 257, 320
BaeGI GKGCMC 2 cut(s) 189, 422
BaeI ACNNNNGTAYC 2 cut(s) 241, 274
BanII GRGCYC 2 cut(s) 105, 189
BbsI GAAGAC 1 cut(s) 11
Bbv12I GWGCWC 2 cut(s) 105, 422
BccI CCATC 1 cut(s) 431
BceAI ACGGC 2 cut(s) 268, 409
BcnI CCSGG 3 cut(s) 189, 210, 211
BfaI CTAG 1 cut(s) 454
BfmI CTRYAG 1 cut(s) 370
BisI GCNGC 6 cut(s) 166, 235, 376, 397, 400, 403
BlpI GCTNAGC 1 cut(s) 99
BlsI GCNGC 6 cut(s) 167, 236, 377, 398, 401, 404
Bme1390I CCNGG 3 cut(s) 189, 210, 211
Bme18I GGWCC 2 cut(s) 257, 320
BmeT110I CYCGRG 1 cut(s) 209
BmgT120I GGNCC 4 cut(s) 185, 186, 257, 320
BmiI GGNNCC 4 cut(s) 88, 187, 271, 321
BmrFI CCNGG 3 cut(s) 189, 210, 211
BoxI GACNNNNGTC 1 cut(s) 76
BpiI GAAGAC 1 cut(s) 11
BplI GAGNNNNNCTC 2 cut(s) 283, 315
Bpu10I CCTNAGC 1 cut(s) 379
Bpu1102I GCTNAGC 1 cut(s) 99
BpuEI CTTGAG 1 cut(s) 89
BpuMI CCSGG 3 cut(s) 189, 210, 211
BsaJI CCNNGG 2 cut(s) 209, 276
BsaWI WCCGGW 1 cut(s) 83
Bsc4I CCNNNNNNNGG 4 cut(s) 194, 195, 215, 266
BseDI CCNNGG 2 cut(s) 209, 276
BseLI CCNNNNNNNGG 4 cut(s) 194, 195, 215, 266
BseMII CTCAG 5 cut(s) 66, 90, 108, 314, 393
BseRI GAGGAG 1 cut(s) 262
BseSI GKGCMC 2 cut(s) 189, 422
BshFI GGCC 2 cut(s) 187, 295
BsiHKAI GWGCWC 2 cut(s) 105, 422
BsiHKCI CYCGRG 1 cut(s) 209
BsiSI CCGG 3 cut(s) 84, 189, 210
BslI CCNNNNNNNGG 4 cut(s) 194, 195, 215, 266
BsnI GGCC 2 cut(s) 187, 295
BsoBI CYCGRG 1 cut(s) 209
Bsp120I GGGCCC 1 cut(s) 185
Bsp1286I GDGCHC 3 cut(s) 105, 189, 422
Bsp143I GATC 2 cut(s) 3, 36
Bsp1720I GCTNAGC 1 cut(s) 99
BspANI GGCC 2 cut(s) 187, 295
BspCNI CTCAG 5 cut(s) 67, 91, 107, 313, 392
BspLI GGNNCC 4 cut(s) 88, 187, 271, 321
BspPI GGATC 1 cut(s) 31
BsrBI CCGCTC 2 cut(s) 264, 378
BssECI CCNNGG 2 cut(s) 209, 276
BssMI GATC 2 cut(s) 3, 36
BssT1I CCWWGG 1 cut(s) 276
BstDEI CTNAG 6 cut(s) 75, 94, 99, 300, 354, 379
BstKTI GATC 2 cut(s) 6, 39
BstMBI GATC 2 cut(s) 3, 36
BstMWI GCNNNNNNNGC 8 cut(s) 95, 165, 231, 261, 396, 402, 408, 417
BstNSI RCATGY 1 cut(s) 348
BstPAI GACNNNNGTC 1 cut(s) 76
BstSCI CCNGG 3 cut(s) 187, 208, 209
BstSFI CTRYAG 1 cut(s) 370
BstSLI GKGCMC 2 cut(s) 189, 422
BstV2I GAAGAC 1 cut(s) 11
BsuRI GGCC 2 cut(s) 187, 295
BtsI GCAGTG 1 cut(s) 42
BtsIMutI CAGTG 1 cut(s) 42
Cfr13I GGNCC 4 cut(s) 185, 186, 257, 320
Cfr9I CCCGGG 1 cut(s) 209
CpoI CGGWCCG 1 cut(s) 257
Csp6I GTAC 2 cut(s) 250, 441
CspCI CAANNNNNGTGG 4 cut(s) 115, 136, 150, 171
CspI CGGWCCG 1 cut(s) 257
CviAII CATG 2 cut(s) 169, 345
CviQI GTAC 2 cut(s) 250, 441
DdeI CTNAG 6 cut(s) 75, 94, 99, 300, 354, 379
DpnI GATC 2 cut(s) 5, 38
DpnII GATC 2 cut(s) 3, 36
DraIII CACNNNGTG 1 cut(s) 56
EciI GGCGGA 1 cut(s) 420
Ecl136II GAGCTC 1 cut(s) 103
Eco130I CCWWGG 1 cut(s) 276
Eco147I AGGCCT 1 cut(s) 295
Eco24I GRGCYC 2 cut(s) 105, 189
Eco47I GGWCC 2 cut(s) 257, 320
Eco53kI GAGCTC 1 cut(s) 103
Eco88I CYCGRG 1 cut(s) 209
EcoICRI GAGCTC 1 cut(s) 103
EcoO109I RGGNCCY 1 cut(s) 320
EcoT14I CCWWGG 1 cut(s) 276
EcoT38I GRGCYC 2 cut(s) 105, 189
ErhI CCWWGG 1 cut(s) 276
FaeI CATG 2 cut(s) 172, 348
FaiI YATR 4 cut(s) 170, 206, 240, 346
FatI CATG 2 cut(s) 168, 344
Fnu4HI GCNGC 6 cut(s) 166, 235, 376, 397, 400, 403
FriOI GRGCYC 2 cut(s) 105, 189
Fsp4HI GCNGC 6 cut(s) 166, 235, 376, 397, 400, 403
FspBI CTAG 1 cut(s) 454
GluI GCNGC 6 cut(s) 166, 235, 376, 397, 400, 403
HaeIII GGCC 2 cut(s) 187, 295
HapII CCGG 3 cut(s) 84, 189, 210
Hin1II CATG 2 cut(s) 172, 348
HinfI GANTC 1 cut(s) 77
HpaII CCGG 3 cut(s) 84, 189, 210
HphI GGTGA 1 cut(s) 355
Hpy166II GTNNAC 3 cut(s) 81, 420, 441
Hpy188I TCNGA 1 cut(s) 261
Hpy188III TCNNGA 1 cut(s) 289
Hpy8I GTNNAC 3 cut(s) 81, 420, 441
HpyAV CCTTC 2 cut(s) 100, 379
HpyCH4V TGCA 3 cut(s) 309, 420, 432
HpyF10VI GCNNNNNNNGC 8 cut(s) 95, 165, 231, 261, 396, 402, 408, 417
HpyF3I CTNAG 6 cut(s) 75, 94, 99, 300, 354, 379
Hsp92II CATG 2 cut(s) 172, 348
Kzo9I GATC 2 cut(s) 3, 36
LmnI GCTCC 3 cut(s) 86, 137, 275
LpnPI CCDG 8 cut(s) 87, 97, 126, 202, 223, 287, 363, 366
MaeI CTAG 1 cut(s) 454
MalI GATC 2 cut(s) 5, 38
MbiI CCGCTC 2 cut(s) 264, 378
MboI GATC 2 cut(s) 3, 36
MboII GAAGA 1 cut(s) 11
MhlI GDGCHC 3 cut(s) 105, 189, 422
MlyI GAGTC 1 cut(s) 86
MspA1I CMGCKG 1 cut(s) 98
MspI CCGG 3 cut(s) 84, 189, 210
MspR9I CCNGG 3 cut(s) 189, 210, 211
MwoI GCNNNNNNNGC 8 cut(s) 95, 165, 231, 261, 396, 402, 408, 417
NciI CCSGG 3 cut(s) 189, 210, 211
NdeII GATC 2 cut(s) 3, 36
NlaIII CATG 2 cut(s) 172, 348
NlaIV GGNNCC 4 cut(s) 88, 187, 271, 321
NspI RCATGY 1 cut(s) 348
PceI AGGCCT 1 cut(s) 295
PciI ACATGT 1 cut(s) 344
PkrI GCNGC 6 cut(s) 167, 236, 377, 398, 401, 404
PleI GAGTC 1 cut(s) 85
PpsI GAGTC 1 cut(s) 85
PpuMI RGGWCCY 1 cut(s) 320
PscI ACATGT 1 cut(s) 344
PshAI GACNNNNGTC 1 cut(s) 76
Psp124BI GAGCTC 1 cut(s) 105
Psp5II RGGWCCY 1 cut(s) 320
PspN4I GGNNCC 4 cut(s) 88, 187, 271, 321
PspOMI GGGCCC 1 cut(s) 185
PspPI GGNCC 4 cut(s) 185, 186, 257, 320
PspPPI RGGWCCY 1 cut(s) 320
PvuII CAGCTG 1 cut(s) 98
RsaI GTAC 2 cut(s) 251, 442
RsaNI GTAC 2 cut(s) 250, 441
Rsr2I CGGWCCG 1 cut(s) 257
RsrII CGGWCCG 1 cut(s) 257
SacI GAGCTC 1 cut(s) 105
SatI GCNGC 6 cut(s) 166, 235, 376, 397, 400, 403
Sau3AI GATC 2 cut(s) 3, 36
Sau96I GGNCC 4 cut(s) 185, 186, 257, 320
SchI GAGTC 1 cut(s) 86
ScrFI CCNGG 3 cut(s) 189, 210, 211
SduI GDGCHC 3 cut(s) 105, 189, 422
SetI ASST 9 cut(s) 76, 100, 105, 133, 142, 196, 306, 342, 368
SfcI CTRYAG 1 cut(s) 370
SinI GGWCC 2 cut(s) 257, 320
SmaI CCCGGG 1 cut(s) 211
SmlI CTYRAG 1 cut(s) 104
SmoI CTYRAG 1 cut(s) 104
SseBI AGGCCT 1 cut(s) 295
SspMI CTAG 1 cut(s) 454
SstI GAGCTC 1 cut(s) 105
StuI AGGCCT 1 cut(s) 295
StyD4I CCNGG 3 cut(s) 187, 208, 209
StyI CCWWGG 1 cut(s) 276
TaqI TCGA 1 cut(s) 426
TatI WGTACW 1 cut(s) 440
TauI GCSGC 6 cut(s) 168, 237, 378, 399, 402, 405
TscAI CASTG 1 cut(s) 49
TspMI CCCGGG 1 cut(s) 209
TspRI CASTG 1 cut(s) 49
VneI GTGCAC 1 cut(s) 418
VpaK11BI GGWCC 2 cut(s) 257, 320
XceI RCATGY 1 cut(s) 348
XmaI CCCGGG 1 cut(s) 209
XspI CTAG 1 cut(s) 454
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.