AT1G61260

BEST Arabidopsis thaliana protein match is Protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0011830
Physical Location & Seq
Reverse (-)
22593465 .. 22595338
1874 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G61260.1

Sequence Viewer

Length: 1035 bp
ATGGTTTCGTGGATGATGACAACCAAGGCGGTGCTAATCTCAAGCGGCGTCGCCACCGTGGCTCTGTTACTGAAACTCTCTGTTCCGGTAGCTGTTGATTTCTCCGTGTCACGAGCTCCGATCTTGTGGAGCTCCTTGTTGTCATGGCTGAAACCACCGTATCTTTACGTTGTTACCAACGGAATTATCATCACTATCGTTGCTTCTTCTAAGTATTACCGAAGTCACCATGACCGTGATGAAGAAGATGAGATCGTCGTGTACGGTGGTGGAGGTTATAAGATCCAGACGGAGGAGCCGATTGTGAATCAACATCAAGCTTCTCCGAGGATTCTGGAGGTTAAGGATTTGGATACTGGTGCGCATTTTGGTTTCGTTGTGGCGAATCTGGAGGCTGAGGAACTGGAATCAGAGGCGGTTACGGCGGTTGTGTTTGACGATGAGGAGGAGGAGAAGAAGATTATAGATAGCGCGGCGACGGCGGAGGATGAAATTGAAGAGGAGCTTAAGAGTGTGATTATGGTTGAGAATTCAGATCTGGTTGAATCCGATGTCATACCGCCGCCGATGATGATCGAATCGGAGAATCTTCCTCCGATTGAGAAGCCTCTCGTTACTTCAAGGTTCGGTCACCGGAAATTGATGAAAGCAAGTCAAGAAGGTGGAAGAGCTTTGAGAGTGACGAAGCCGAAGAAGAACGAGACGTTGGAGAATACGTGGAAGATGATAACGGAAGGGAAATCAACGCCGTTGACTAGACAGTTATACCGGAGATCTGACACGTTTGGACGTGGAGATTCCGGGGGAGTTGACGGTGAGGTGAAACCGGTTTATAAGAAGTCGGATACGTTTAGGGACAGGACTAATTATTATCAGTTGGCGGAGACGGCGAAGGTGAGGAAAGAGCCGTCGCTGAGTCAGGAAGAGTTGAATCGGCGAGTTGAGGCGTTTATAAAGAAGTTTAATGAGGAGATGAAGTTGCAGAGAATGGAGTCTCTCAGACAGTACAAAGAGATAACTAGCCGTGGGGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4408 DUF761

Protein Analysis

344

Amino Acids

38.88

Weight (kDa)

5.29

Isoelectric Point (pI)

46.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4408 PF14364 40 - 72 1.1e-16 Domain of unknown function (DUF4408)
DUF761 PF05553 307 - 342 3.9e-14 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011830)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G61260
fragaria_vesca FvH4_3g04160
malus_domestica MD05G1324300.v1.1 MD10G1302100.v1.1
prunus_persica Prupe.4G035700_v2.0.a1
pyrus_communis pycom05g29850 pycom10g25460
rosa_chinensis RchiOBHm_Chr5g0006611
rosa_laevigata RLG00000031406
rosa_multiflora Rmu_co8099104.1_g000001 Rmu_sc0001972.1_g000005 Rmu_sc0011154.1_g000002
rosa_roxburghii Rroxscaffold_1G00069400
rosa_rugosa Rorug04G0423100
rosa_samantha Rh5AG050500 Rh5BG049600 Rh5CG058100 Rh5DG049000
rosa_wichuraiana Rw5G005030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 279, 834, 953
Acc16I TGCGCA 1 cut(s) 363
AccII CGCG 1 cut(s) 473
AciI CCGC 9 cut(s) 29, 45, 416, 425, 473, 482, 560, 563, 881
AclWI GGATC 1 cut(s) 277
AcsI RAATTY 1 cut(s) 529
AcyI GRCGYC 1 cut(s) 48
AfaI GTAC 2 cut(s) 263, 1007
AfiI CCNNNNNNNGG 1 cut(s) 292
AflII CTTAAG 1 cut(s) 506
AflIII ACRYGT 1 cut(s) 780
AgeI ACCGGT 1 cut(s) 826
AgsI TTSAA 4 cut(s) 497, 545, 621, 931
AjiI CACGTC 1 cut(s) 791
AjuI GAANNNNNNNTTGG 2 cut(s) 689, 721
AluBI AGCT 6 cut(s) 92, 116, 132, 320, 505, 671
AluI AGCT 6 cut(s) 92, 116, 132, 320, 505, 671
Alw21I GWGCWC 2 cut(s) 118, 134
Alw26I GTCTC 3 cut(s) 695, 878, 999
AlwI GGATC 1 cut(s) 277
ApoI RAATTY 1 cut(s) 529
AsiGI ACCGGT 1 cut(s) 826
AspLEI GCGC 2 cut(s) 364, 473
AsuC2I CCSGG 1 cut(s) 802
AsuHPI GGTGA 5 cut(s) 218, 623, 827, 832, 907
BaeI ACNNNNGTAYC 2 cut(s) 143, 176
BanII GRGCYC 2 cut(s) 118, 134
BauI CACGAG 1 cut(s) 111
Bbv12I GWGCWC 2 cut(s) 118, 134
BbvCI CCTCAGC 1 cut(s) 396
BceAI ACGGC 6 cut(s) 438, 495, 733, 892, 903, 1008
BciVI GTATCC 2 cut(s) 346, 838
BcnI CCSGG 1 cut(s) 802
BcoDI GTCTC 3 cut(s) 695, 878, 999
BfaI CTAG 2 cut(s) 756, 1020
BfrI CTTAAG 1 cut(s) 506
BfuI GTATCC 2 cut(s) 346, 838
BglI GCCNNNNNGGC 1 cut(s) 59
BglII AGATCT 2 cut(s) 535, 773
BisI GCNGC 3 cut(s) 46, 474, 563
BlsI GCNGC 3 cut(s) 47, 475, 564
Bme1390I CCNGG 1 cut(s) 802
BmgBI CACGTC 1 cut(s) 791
BmiI GGNNCC 1 cut(s) 297
BmrFI CCNGG 1 cut(s) 802
BpmI CTGGAG 2 cut(s) 356, 410
Bpu10I CCTNAGC 1 cut(s) 396
BpuEI CTTGAG 1 cut(s) 25
BpuMI CCSGG 1 cut(s) 802
BsaAI YACGTR 1 cut(s) 717
BsaBI GATNNNNATC 1 cut(s) 572
BsaHI GRCGYC 1 cut(s) 48
BsaJI CCNNGG 5 cut(s) 24, 57, 326, 801, 1024
BsaWI WCCGGW 4 cut(s) 85, 633, 768, 826
BsaXI ACNNNNNCTCC 4 cut(s) 701, 731, 962, 992
Bsc4I CCNNNNNNNGG 1 cut(s) 292
Bse118I RCCGGY 1 cut(s) 826
Bse1I ACTGG 2 cut(s) 361, 408
Bse8I GATNNNNATC 1 cut(s) 572
BseDI CCNNGG 5 cut(s) 24, 57, 326, 801, 1024
BseGI GGATG 2 cut(s) 18, 493
BseJI GATNNNNATC 1 cut(s) 572
BseLI CCNNNNNNNGG 1 cut(s) 292
BseMII CTCAG 3 cut(s) 387, 905, 1012
BseNI ACTGG 2 cut(s) 361, 408
BseRI GAGGAG 6 cut(s) 308, 458, 461, 464, 515, 983
Bsh1236I CGCG 1 cut(s) 473
BshTI ACCGGT 1 cut(s) 826
BsiHKAI GWGCWC 2 cut(s) 118, 134
BsiSI CCGG 5 cut(s) 86, 634, 769, 801, 827
BslFI GGGAC 1 cut(s) 869
BslI CCNNNNNNNGG 1 cut(s) 292
BsmAI GTCTC 3 cut(s) 695, 878, 999
BsmBI CGTCTC 2 cut(s) 695, 878
BsmFI GGGAC 1 cut(s) 869
Bsp1286I GDGCHC 2 cut(s) 118, 134
Bsp143I GATC 6 cut(s) 120, 252, 282, 535, 573, 773
BspACI CCGC 9 cut(s) 29, 45, 416, 425, 473, 482, 560, 563, 881
BspCNI CTCAG 3 cut(s) 388, 906, 1011
BspFNI CGCG 1 cut(s) 473
BspLI GGNNCC 1 cut(s) 297
BspPI GGATC 1 cut(s) 277
BspQI GCTCTTC 1 cut(s) 661
BspTI CTTAAG 1 cut(s) 506
BsrFI RCCGGY 1 cut(s) 826
BsrI ACTGG 2 cut(s) 361, 408
BssAI RCCGGY 1 cut(s) 826
BssECI CCNNGG 5 cut(s) 24, 57, 326, 801, 1024
BssMI GATC 6 cut(s) 120, 252, 282, 535, 573, 773
BssNI GRCGYC 1 cut(s) 48
BssSI CACGAG 1 cut(s) 111
BssT1I CCWWGG 1 cut(s) 24
Bst2BI CACGAG 1 cut(s) 111
Bst4CI ACNGT 7 cut(s) 58, 159, 236, 266, 762, 815, 1005
Bst6I CTCTTC 3 cut(s) 492, 661, 918
BstACI GRCGYC 1 cut(s) 48
BstAFI CTTAAG 1 cut(s) 506
BstBAI YACGTR 1 cut(s) 717
BstDEI CTNAG 4 cut(s) 210, 396, 914, 998
BstDSI CCRYGG 2 cut(s) 57, 1024
BstEII GGTNACC 1 cut(s) 629
BstF5I GGATG 2 cut(s) 18, 493
BstFNI CGCG 1 cut(s) 473
BstHHI GCGC 2 cut(s) 364, 473
BstKTI GATC 6 cut(s) 123, 255, 285, 538, 576, 776
BstMAI GTCTC 3 cut(s) 695, 878, 999
BstMBI GATC 6 cut(s) 120, 252, 282, 535, 573, 773
BstMWI GCNNNNNNNGC 4 cut(s) 59, 422, 479, 887
BstPI GGTNACC 1 cut(s) 629
BstSCI CCNGG 1 cut(s) 800
BstUI CGCG 1 cut(s) 473
BstX2I RGATCY 3 cut(s) 282, 535, 773
BstYI RGATCY 3 cut(s) 282, 535, 773
BsuI GTATCC 2 cut(s) 346, 838
BtgI CCRYGG 2 cut(s) 57, 1024
BtrI CACGTC 1 cut(s) 791
BtsCI GGATG 2 cut(s) 18, 493
CfoI GCGC 2 cut(s) 364, 473
Cfr10I RCCGGY 1 cut(s) 826
CseI GACGC 1 cut(s) 37
Csp6I GTAC 2 cut(s) 262, 1006
CspAI ACCGGT 1 cut(s) 826
CviAII CATG 2 cut(s) 144, 230
CviQI GTAC 2 cut(s) 262, 1006
DdeI CTNAG 4 cut(s) 210, 396, 914, 998
DpnI GATC 6 cut(s) 122, 254, 284, 537, 575, 775
DpnII GATC 6 cut(s) 120, 252, 282, 535, 573, 773
Eam1104I CTCTTC 3 cut(s) 492, 661, 918
EarI CTCTTC 3 cut(s) 492, 661, 918
EciI GGCGGA 2 cut(s) 497, 896
Ecl136II GAGCTC 2 cut(s) 116, 132
Eco130I CCWWGG 1 cut(s) 24
Eco24I GRGCYC 2 cut(s) 118, 134
Eco53kI GAGCTC 2 cut(s) 116, 132
Eco91I GGTNACC 1 cut(s) 629
EcoICRI GAGCTC 2 cut(s) 116, 132
EcoO65I GGTNACC 1 cut(s) 629
EcoRI GAATTC 1 cut(s) 529
EcoT14I CCWWGG 1 cut(s) 24
EcoT38I GRGCYC 2 cut(s) 118, 134
ErhI CCWWGG 1 cut(s) 24
Esp3I CGTCTC 2 cut(s) 695, 878
FaeI CATG 2 cut(s) 147, 233
FaiI YATR 9 cut(s) 145, 231, 279, 464, 521, 557, 766, 834, 953
FalI AAGNNNNNCTT 2 cut(s) 489, 521
FaqI GGGAC 1 cut(s) 869
FatI CATG 2 cut(s) 143, 229
Fnu4HI GCNGC 3 cut(s) 46, 474, 563
FokI GGATG 2 cut(s) 25, 500
FriOI GRGCYC 2 cut(s) 118, 134
Fsp4HI GCNGC 3 cut(s) 46, 474, 563
FspAI RTGCGCAY 1 cut(s) 363
FspBI CTAG 2 cut(s) 756, 1020
FspI TGCGCA 1 cut(s) 363
GlaI GCGC 2 cut(s) 363, 472
GluI GCNGC 3 cut(s) 46, 474, 563
GsuI CTGGAG 2 cut(s) 356, 410
HapII CCGG 5 cut(s) 86, 634, 769, 801, 827
HgaI GACGC 1 cut(s) 37
HhaI GCGC 2 cut(s) 364, 473
Hin1I GRCGYC 1 cut(s) 48
Hin1II CATG 2 cut(s) 147, 233
Hin6I GCGC 2 cut(s) 362, 471
HinP1I GCGC 2 cut(s) 362, 471
HincII GTYRAC 2 cut(s) 753, 811
HindII GTYRAC 2 cut(s) 753, 811
HindIII AAGCTT 1 cut(s) 318
HpaII CCGG 5 cut(s) 86, 634, 769, 801, 827
HphI GGTGA 5 cut(s) 218, 623, 827, 832, 907
Hpy166II GTNNAC 3 cut(s) 262, 753, 811
Hpy188III TCNNGA 6 cut(s) 111, 286, 335, 389, 656, 920
Hpy8I GTNNAC 3 cut(s) 262, 753, 811
Hpy99I CGWCG 4 cut(s) 53, 260, 481, 913
HpyAV CCTTC 3 cut(s) 653, 728, 886
HpyCH4III ACNGT 7 cut(s) 58, 159, 236, 266, 762, 815, 1005
HpyCH4IV ACGT 6 cut(s) 168, 704, 716, 782, 790, 848
HpyCH4V TGCA 1 cut(s) 982
HpyF10VI GCNNNNNNNGC 4 cut(s) 59, 422, 479, 887
HpyF3I CTNAG 4 cut(s) 210, 396, 914, 998
HpySE526I ACGT 6 cut(s) 168, 704, 716, 782, 790, 848
Hsp92I GRCGYC 1 cut(s) 48
Hsp92II CATG 2 cut(s) 147, 233
HspAI GCGC 2 cut(s) 362, 471
Kzo9I GATC 6 cut(s) 120, 252, 282, 535, 573, 773
LguI GCTCTTC 1 cut(s) 661
LmnI GCTCC 5 cut(s) 121, 129, 137, 295, 502
MaeI CTAG 2 cut(s) 756, 1020
MaeII ACGT 6 cut(s) 168, 704, 716, 782, 790, 848
MaeIII GTNAC 8 cut(s) 66, 108, 172, 224, 418, 613, 629, 679
MalI GATC 6 cut(s) 122, 254, 284, 537, 575, 775
MboI GATC 6 cut(s) 120, 252, 282, 535, 573, 773
MflI RGATCY 3 cut(s) 282, 535, 773
MhlI GDGCHC 2 cut(s) 118, 134
MluCI AATT 5 cut(s) 183, 492, 529, 638, 865
MlyI GAGTC 2 cut(s) 925, 1001
MmeI TCCRAC 2 cut(s) 687, 822
MseI TTAA 3 cut(s) 342, 507, 963
MslI CAYNNNNRTG 1 cut(s) 234
MspCI CTTAAG 1 cut(s) 506
MspI CCGG 5 cut(s) 86, 634, 769, 801, 827
MspR9I CCNGG 1 cut(s) 802
MvnI CGCG 1 cut(s) 473
MwoI GCNNNNNNNGC 4 cut(s) 59, 422, 479, 887
NciI CCSGG 1 cut(s) 802
NdeII GATC 6 cut(s) 120, 252, 282, 535, 573, 773
NlaIII CATG 2 cut(s) 147, 233
NlaIV GGNNCC 1 cut(s) 297
NmuCI GTSAC 4 cut(s) 108, 224, 629, 679
NsbI TGCGCA 1 cut(s) 363
PciSI GCTCTTC 1 cut(s) 661
PcsI WCGNNNNNNNCGW 1 cut(s) 296
PfeI GAWTC 9 cut(s) 307, 331, 385, 407, 545, 578, 586, 797, 931
PinAI ACCGGT 1 cut(s) 826
PkrI GCNGC 3 cut(s) 47, 475, 564
PleI GAGTC 2 cut(s) 924, 1000
PpsI GAGTC 2 cut(s) 924, 1000
Ppu21I YACGTR 1 cut(s) 717
PsiI TTATAA 3 cut(s) 279, 834, 953
Psp124BI GAGCTC 2 cut(s) 118, 134
PspEI GGTNACC 1 cut(s) 629
PspN4I GGNNCC 1 cut(s) 297
PsuI RGATCY 3 cut(s) 282, 535, 773
RsaI GTAC 2 cut(s) 263, 1007
RsaNI GTAC 2 cut(s) 262, 1006
RseI CAYNNNNRTG 1 cut(s) 234
SacI GAGCTC 2 cut(s) 118, 134
SapI GCTCTTC 1 cut(s) 661
SaqAI TTAA 3 cut(s) 342, 507, 963
SatI GCNGC 3 cut(s) 46, 474, 563
Sau3AI GATC 6 cut(s) 120, 252, 282, 535, 573, 773
SchI GAGTC 2 cut(s) 925, 1001
ScrFI CCNGG 1 cut(s) 802
SduI GDGCHC 2 cut(s) 118, 134
SmiMI CAYNNNNRTG 1 cut(s) 234
SmlI CTYRAG 2 cut(s) 40, 506
SmoI CTYRAG 2 cut(s) 40, 506
Sse9I AATT 5 cut(s) 183, 492, 529, 638, 865
SsiI CCGC 9 cut(s) 29, 45, 416, 425, 473, 482, 560, 563, 881
SspMI CTAG 2 cut(s) 756, 1020
SstI GAGCTC 2 cut(s) 118, 134
StyD4I CCNGG 1 cut(s) 800
StyI CCWWGG 1 cut(s) 24
TaaI ACNGT 7 cut(s) 58, 159, 236, 266, 762, 815, 1005
TaiI ACGT 6 cut(s) 171, 707, 719, 785, 793, 851
TaqI TCGA 1 cut(s) 576
TaqII GACCGA 1 cut(s) 617
TasI AATT 5 cut(s) 183, 492, 529, 638, 865
TatI WGTACW 1 cut(s) 1005
TauI GCSGC 3 cut(s) 48, 476, 565
TfiI GAWTC 9 cut(s) 307, 331, 385, 407, 545, 578, 586, 797, 931
Tru1I TTAA 3 cut(s) 342, 507, 963
Tru9I TTAA 3 cut(s) 342, 507, 963
TseFI GTSAC 4 cut(s) 108, 224, 629, 679
Tsp45I GTSAC 4 cut(s) 108, 224, 629, 679
TspDTI ATGAA 4 cut(s) 255, 504, 659, 989
TspGWI ACGGA 4 cut(s) 94, 195, 305, 746
Vha464I CTTAAG 1 cut(s) 506
XapI RAATTY 1 cut(s) 529
XspI CTAG 2 cut(s) 756, 1020
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.