Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8099104.1

Orthogroup ID

OG0011830

Physical Location & Seq

Genomic Coordinates Reverse (-)

119 .. 475

Gene Structure 357 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8099104.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

atgataacggaggggcgtgcgatgccgttgagcaggcacatcaagaagagcgacacgtgggatcatcacggtagcggaggtgtcaacgttaacgatgaagtggacgaggagacgtcagaagcagtgcaacagtcaaagacgtttaaggacatgacgaaccagcagaaggtgaggaccatggcagctgtgagttcctcgccgggagggattaagctgaggaaagagccgtcgctgagtcaggacgatttgaaccgccgagtcgaggcgtttatacagaagttcaacgaagaaatgaggttgcagagacaggagtcattggatcagtacatggagatgatcaaccgtggaagccattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4408 DUF761

Protein Analysis

118

Amino Acids

13.52

Weight (kDa)

6.08

Isoelectric Point (pI)

58.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011830)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61260
fragaria_vesca	FvH4_3g04160
malus_domestica	MD05G1324300.v1.1 MD10G1302100.v1.1
prunus_persica	Prupe.4G035700_v2.0.a1
pyrus_communis	pycom05g29850 pycom10g25460
rosa_chinensis	RchiOBHm_Chr5g0006611
rosa_laevigata	RLG00000031406
rosa_multiflora	Rmu_co8099104.1_g000001 Rmu_sc0001972.1_g000005 Rmu_sc0011154.1_g000002
rosa_roxburghii	Rroxscaffold_1G00069400
rosa_rugosa	Rorug04G0423100
rosa_samantha	Rh5AG050500 Rh5BG049600 Rh5CG058100 Rh5DG049000
rosa_wichuraiana	Rw5G005030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	116
AciI	CCGC	2 cut(s)	75, 253
AclI	AACGTT	1 cut(s)	87
AclWI	GGATC	2 cut(s)	69, 327
AcvI	CACGTG	1 cut(s)	57
AcyI	GRCGYC	1 cut(s)	113
AfaI	GTAC	1 cut(s)	326
AfiI	CCNNNNNNNGG	2 cut(s)	166, 262
AflIII	ACRYGT	1 cut(s)	54
AgsI	TTSAA	2 cut(s)	250, 283
AluBI	AGCT	2 cut(s)	185, 214
AluI	AGCT	2 cut(s)	185, 214
Alw26I	GTCTC	2 cut(s)	104, 298
AlwI	GGATC	2 cut(s)	69, 327
ApeKI	GCWGC	1 cut(s)	182
AspS9I	GGNCC	1 cut(s)	174
AsuC2I	CCSGG	1 cut(s)	201
AsuHPI	GGTGA	1 cut(s)	181
AvaII	GGWCC	1 cut(s)	174
BbrPI	CACGTG	1 cut(s)	57
BbvCI	CCTCAGC	1 cut(s)	215
BbvI	GCAGC	1 cut(s)	194
BceAI	ACGGC	2 cut(s)	10, 211
BclI	TGATCA	1 cut(s)	336
BcnI	CCSGG	1 cut(s)	201
BcoDI	GTCTC	2 cut(s)	104, 298
BisI	GCNGC	1 cut(s)	183
BlsI	GCNGC	1 cut(s)	184
Bme1390I	CCNGG	1 cut(s)	201
Bme18I	GGWCC	1 cut(s)	174
BmgT120I	GGNCC	1 cut(s)	174
BmrFI	CCNGG	1 cut(s)	201
BmsI	GCATC	1 cut(s)	12
BoxI	GACNNNNGTC	1 cut(s)	310
Bpu10I	CCTNAGC	1 cut(s)	215
BpuMI	CCSGG	1 cut(s)	201
BsaAI	YACGTR	1 cut(s)	57
BsaHI	GRCGYC	1 cut(s)	113
BsaJI	CCNNGG	2 cut(s)	177, 343
Bsc4I	CCNNNNNNNGG	2 cut(s)	166, 262
BseDI	CCNNGG	2 cut(s)	177, 343
BseLI	CCNNNNNNNGG	2 cut(s)	166, 262
BseMII	CTCAG	2 cut(s)	206, 224
BseRI	GAGGAG	1 cut(s)	122
BseXI	GCAGC	1 cut(s)	194
BsiSI	CCGG	1 cut(s)	200
BslI	CCNNNNNNNGG	2 cut(s)	166, 262
BsmAI	GTCTC	2 cut(s)	104, 298
BsmBI	CGTCTC	1 cut(s)	104
Bsp143I	GATC	3 cut(s)	61, 319, 336
Bsp19I	CCATGG	1 cut(s)	177
BspACI	CCGC	2 cut(s)	75, 253
BspCNI	CTCAG	2 cut(s)	207, 225
BspPI	GGATC	2 cut(s)	69, 327
BspQI	GCTCTTC	1 cut(s)	41
BssECI	CCNNGG	2 cut(s)	177, 343
BssMI	GATC	3 cut(s)	61, 319, 336
BssNI	GRCGYC	1 cut(s)	113
BssT1I	CCWWGG	1 cut(s)	177
Bst4CI	ACNGT	3 cut(s)	71, 132, 344
Bst6I	CTCTTC	1 cut(s)	41
BstACI	GRCGYC	1 cut(s)	113
BstBAI	YACGTR	1 cut(s)	57
BstC8I	GCNNGC	2 cut(s)	18, 35
BstDEI	CTNAG	2 cut(s)	215, 233
BstDSI	CCRYGG	2 cut(s)	177, 343
BstKTI	GATC	3 cut(s)	64, 322, 339
BstMAI	GTCTC	2 cut(s)	104, 298
BstMBI	GATC	3 cut(s)	61, 319, 336
BstMWI	GCNNNNNNNGC	1 cut(s)	22
BstPAI	GACNNNNGTC	1 cut(s)	310
BstSCI	CCNGG	1 cut(s)	199
BstV1I	GCAGC	1 cut(s)	194
BtgI	CCRYGG	2 cut(s)	177, 343
BtgZI	GCGATG	1 cut(s)	35
BtsI	GCAGTG	1 cut(s)	129
BtsIMutI	CAGTG	1 cut(s)	129
Cac8I	GCNNGC	2 cut(s)	18, 35
Cfr13I	GGNCC	1 cut(s)	174
Csp6I	GTAC	1 cut(s)	325
CviAII	CATG	3 cut(s)	151, 178, 328
CviJI	RGCY	4 cut(s)	185, 214, 226, 351
CviKI_1	RGCY	4 cut(s)	185, 214, 226, 351
CviQI	GTAC	1 cut(s)	325
DdeI	CTNAG	2 cut(s)	215, 233
DpnI	GATC	3 cut(s)	63, 321, 338
DpnII	GATC	3 cut(s)	61, 319, 336
Eam1104I	CTCTTC	1 cut(s)	41
EarI	CTCTTC	1 cut(s)	41
Eco130I	CCWWGG	1 cut(s)	177
Eco47I	GGWCC	1 cut(s)	174
Eco72I	CACGTG	1 cut(s)	57
EcoT14I	CCWWGG	1 cut(s)	177
ErhI	CCWWGG	1 cut(s)	177
Esp3I	CGTCTC	1 cut(s)	104
FaeI	CATG	3 cut(s)	154, 181, 331
FaiI	YATR	4 cut(s)	152, 179, 272, 329
FatI	CATG	3 cut(s)	150, 177, 327
FbaI	TGATCA	1 cut(s)	336
Fnu4HI	GCNGC	1 cut(s)	183
Fsp4HI	GCNGC	1 cut(s)	183
GluI	GCNGC	1 cut(s)	183
HapII	CCGG	1 cut(s)	200
Hin1I	GRCGYC	1 cut(s)	113
Hin1II	CATG	3 cut(s)	154, 181, 331
HincII	GTYRAC	2 cut(s)	85, 91
HindII	GTYRAC	2 cut(s)	85, 91
HinfI	GANTC	3 cut(s)	235, 258, 311
HpaI	GTTAAC	1 cut(s)	91
HpaII	CCGG	1 cut(s)	200
HphI	GGTGA	1 cut(s)	181
Hpy166II	GTNNAC	3 cut(s)	85, 91, 103
Hpy188I	TCNGA	1 cut(s)	118
Hpy188III	TCNNGA	2 cut(s)	43, 239
Hpy8I	GTNNAC	3 cut(s)	85, 91, 103
Hpy99I	CGWCG	1 cut(s)	232
HpyAV	CCTTC	1 cut(s)	160
HpyCH4III	ACNGT	3 cut(s)	71, 132, 344
HpyCH4IV	ACGT	4 cut(s)	56, 87, 113, 140
HpyCH4V	TGCA	2 cut(s)	127, 301
HpyF10VI	GCNNNNNNNGC	1 cut(s)	22
HpyF3I	CTNAG	2 cut(s)	215, 233
HpySE526I	ACGT	4 cut(s)	56, 87, 113, 140
Hsp92I	GRCGYC	1 cut(s)	113
Hsp92II	CATG	3 cut(s)	154, 181, 331
Ksp22I	TGATCA	1 cut(s)	336
KspAI	GTTAAC	1 cut(s)	91
Kzo9I	GATC	3 cut(s)	61, 319, 336
LguI	GCTCTTC	1 cut(s)	41
LpnPI	CCDG	5 cut(s)	19, 173, 213, 224, 293
Lsp1109I	GCAGC	1 cut(s)	194
LweI	GCATC	1 cut(s)	12
MaeII	ACGT	4 cut(s)	56, 87, 113, 140
MalI	GATC	3 cut(s)	63, 321, 338
MboI	GATC	3 cut(s)	61, 319, 336
MboII	GAAGA	2 cut(s)	58, 299
MlyI	GAGTC	3 cut(s)	244, 267, 320
MnlI	CCTC	9 cut(s)	4, 71, 100, 165, 197, 205, 210, 256, 288
MseI	TTAA	3 cut(s)	90, 144, 210
MslI	CAYNNNNRTG	1 cut(s)	332
MspA1I	CMGCKG	1 cut(s)	185
MspI	CCGG	1 cut(s)	200
MspR9I	CCNGG	1 cut(s)	201
MwoI	GCNNNNNNNGC	1 cut(s)	22
NciI	CCSGG	1 cut(s)	201
NcoI	CCATGG	1 cut(s)	177
NdeII	GATC	3 cut(s)	61, 319, 336
NlaIII	CATG	3 cut(s)	154, 181, 331
NmeAIII	GCCGAG	1 cut(s)	281
PciSI	GCTCTTC	1 cut(s)	41
PkrI	GCNGC	1 cut(s)	184
PleI	GAGTC	3 cut(s)	243, 266, 319
PmaCI	CACGTG	1 cut(s)	57
PmlI	CACGTG	1 cut(s)	57
PpsI	GAGTC	3 cut(s)	243, 266, 319
Ppu21I	YACGTR	1 cut(s)	57
PshAI	GACNNNNGTC	1 cut(s)	310
Psp1406I	AACGTT	1 cut(s)	87
PspCI	CACGTG	1 cut(s)	57
PspPI	GGNCC	1 cut(s)	174
PvuII	CAGCTG	1 cut(s)	185
RsaI	GTAC	1 cut(s)	326
RsaNI	GTAC	1 cut(s)	325
RseI	CAYNNNNRTG	1 cut(s)	332
SapI	GCTCTTC	1 cut(s)	41
SaqAI	TTAA	3 cut(s)	90, 144, 210
SatI	GCNGC	1 cut(s)	183
Sau3AI	GATC	3 cut(s)	61, 319, 336
Sau96I	GGNCC	1 cut(s)	174
SchI	GAGTC	3 cut(s)	244, 267, 320
ScrFI	CCNGG	1 cut(s)	201
SetI	ASST	9 cut(s)	59, 82, 90, 116, 143, 171, 187, 216, 299
SfaNI	GCATC	1 cut(s)	12
SinI	GGWCC	1 cut(s)	174
SmiMI	CAYNNNNRTG	1 cut(s)	332
SsiI	CCGC	2 cut(s)	75, 253
StyD4I	CCNGG	1 cut(s)	199
StyI	CCWWGG	1 cut(s)	177
TaaI	ACNGT	3 cut(s)	71, 132, 344
TaiI	ACGT	4 cut(s)	59, 90, 116, 143
TaqI	TCGA	1 cut(s)	261
TatI	WGTACW	1 cut(s)	324
Tru1I	TTAA	3 cut(s)	90, 144, 210
Tru9I	TTAA	3 cut(s)	90, 144, 210
TscAI	CASTG	1 cut(s)	129
TseI	GCWGC	1 cut(s)	182
TspDTI	ATGAA	1 cut(s)	111
TspGWI	ACGGA	1 cut(s)	23
TspRI	CASTG	1 cut(s)	129
VpaK11BI	GGWCC	1 cut(s)	174
ZraI	GACGTC	1 cut(s)	114

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.