Prupe.4G035700_v2.0.a1

Domain of unknown function (DUF4408)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0011830
Physical Location & Seq
Forward (+)
1688867 .. 1690778
1912 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G035700.1

Sequence Viewer

Length: 1053 bp
ATGGCGTGGATTGCTTCTTTGAAGATTGTGCTAATTTCGAGCGGCGTGGTGGCGTTGGCGTGGGCTATGAAGCTCTCCGTTCCACTGGTGATGGAATTCGTAGCCTCTCACTTGCCGCTCGTGTGCGCCTCCTTCCGATCCTTGCTCAGGCCTCCGTATATTTACGTTCTCATCAACGGCATCATCATCACCATCGTCGCTTCCTCGAGGTTCCACAACGACCGCTCGCCTCAGCCTAAGCCTCAACCGGAAGAGTCTGAATCGACCGTCTCGGAGACGCCGGCGGTTTACGAGCAGCGGAGATATCTAGAGCCTCTAGTTCATGAGGAGGTGCACGAGGAGAGGCCTGCGGTGATCAATGGCTCTGTAGAAGCAGAGCCTGAGCCGGAGGTTAAAGATGTACGTGTAGACGAAGACGAGGTTGTGATCTCGAGCTCCAAGTGGACACCGCCAAAGAGTGTGATGAAATCCGACGAGATTGCTTCGCCGGAGGTTGAAGATGTTCGTCTAGATGAAGACGAGGTTGTGATCTCGAGCTCCACGTGGACGCCGCCGAAGAGTGTGATGAAATCCGACGAGATTGCTTCGCCGGTGGAGAAACCTCTGGTTTCTGTGAGATTCAGCCACCGGAAACCGGCTAGATCCAGTCCTGAAGGTGGGAAGCCGTTGAGAGTAGCGAAGCCAAAACGGCACGACACATTGGAGAACACGTGGAAAGCGATAACGGAAGGGCGTTCGATGCCGCTGAGCAGGCACATGAAGAAGAGCGAGACGTGGGAGAATCACGGCCGTCAAGTTCAACTGAAGGTTGACTCAGCAGTGGACACGTCAGCGGTGCTGAACTCAGAGACGTTCAAGGACTGGACGAATCAGCAGCAAGTGACAGCATCGGCTGGGTGCGTAGGGAAGCTGAGGAAAGAGCCGTCGCTGAGCCAGGACGAGTTGAACCGCCGAGTTGAAGCGTTCATAAACAAGTTCAATGAGGAAATGAGGCTGCAGAGACAAGAGTCGTTGAATCAATACATGGAGACGGTCAAGCGTGGAAGCCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4408 DUF761

Protein Analysis

351

Amino Acids

39.47

Weight (kDa)

6.0

Isoelectric Point (pI)

54.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011830)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G61260
fragaria_vesca FvH4_3g04160
malus_domestica MD05G1324300.v1.1 MD10G1302100.v1.1
prunus_persica Prupe.4G035700_v2.0.a1
pyrus_communis pycom05g29850 pycom10g25460
rosa_chinensis RchiOBHm_Chr5g0006611
rosa_laevigata RLG00000031406
rosa_multiflora Rmu_co8099104.1_g000001 Rmu_sc0001972.1_g000005 Rmu_sc0011154.1_g000002
rosa_roxburghii Rroxscaffold_1G00069400
rosa_rugosa Rorug04G0423100
rosa_samantha Rh5AG050500 Rh5BG049600 Rh5CG058100 Rh5DG049000
rosa_wichuraiana Rw5G005030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 205
AccBSI CCGCTC 3 cut(s) 42, 118, 225
AccI GTMKAC 1 cut(s) 408
AclWI GGATC 2 cut(s) 132, 636
AcoI YGGCCR 1 cut(s) 787
AcsI RAATTY 1 cut(s) 95
AcuI CTGAAG 2 cut(s) 672, 824
AcvI CACGTG 2 cut(s) 543, 711
AcyI GRCGYC 2 cut(s) 278, 548
AfaI GTAC 1 cut(s) 402
AfiI CCNNNNNNNGG 3 cut(s) 147, 634, 656
AflIII ACRYGT 3 cut(s) 403, 708, 825
AgsI TTSAA 8 cut(s) 22, 497, 800, 856, 946, 959, 979, 1015
AjiI CACGTC 2 cut(s) 774, 828
AjnI CCWGG 1 cut(s) 933
AluBI AGCT 4 cut(s) 73, 435, 537, 910
AluI AGCT 4 cut(s) 73, 435, 537, 910
Alw21I GWGCWC 3 cut(s) 336, 437, 539
Alw26I GTCTC 6 cut(s) 269, 274, 764, 842, 994, 1022
Alw44I GTGCAC 1 cut(s) 332
AlwI GGATC 2 cut(s) 132, 636
AlwNI CAGNNNCTG 1 cut(s) 380
Ama87I CYCGRG 3 cut(s) 205, 430, 532
AoxI GGCC 3 cut(s) 149, 344, 787
ApaLI GTGCAC 1 cut(s) 332
ApeKI GCWGC 3 cut(s) 295, 874, 994
ApoI RAATTY 1 cut(s) 95
Asp700I GAANNNNTTC 1 cut(s) 501
AspLEI GCGC 1 cut(s) 128
AsuHPI GGTGA 3 cut(s) 100, 181, 364
AvaI CYCGRG 3 cut(s) 205, 430, 532
BaeGI GKGCMC 1 cut(s) 336
BanII GRGCYC 2 cut(s) 437, 539
BauI CACGAG 2 cut(s) 119, 335
BbrPI CACGTG 2 cut(s) 543, 711
BbsI GAAGAC 2 cut(s) 420, 522
Bbv12I GWGCWC 3 cut(s) 336, 437, 539
BbvCI CCTCAGC 2 cut(s) 231, 911
BbvI GCAGC 3 cut(s) 307, 886, 981
BccI CCATC 2 cut(s) 85, 200
BceAI ACGGC 6 cut(s) 193, 649, 704, 774, 802, 907
BcgI CGANNNNNNTGC 4 cut(s) 461, 495, 563, 597
BciT130I CCWGG 1 cut(s) 935
BclI TGATCA 1 cut(s) 354
BcoDI GTCTC 6 cut(s) 269, 274, 764, 842, 994, 1022
BfaI CTAG 4 cut(s) 308, 317, 509, 639
BfmI CTRYAG 2 cut(s) 366, 995
BglI GCCNNNNNGGC 1 cut(s) 688
BisI GCNGC 7 cut(s) 43, 116, 296, 551, 743, 875, 995
BlpI GCTNAGC 2 cut(s) 746, 929
BlsI GCNGC 7 cut(s) 44, 117, 297, 552, 744, 876, 996
Bme1390I CCNGG 1 cut(s) 935
BmeT110I CYCGRG 3 cut(s) 205, 430, 532
BmgBI CACGTC 2 cut(s) 774, 828
BmiI GGNNCC 1 cut(s) 212
BmrFI CCNGG 1 cut(s) 935
BmsI GCATC 3 cut(s) 189, 729, 896
BoxI GACNNNNGTC 1 cut(s) 1006
BpiI GAAGAC 2 cut(s) 420, 522
Bpu10I CCTNAGC 5 cut(s) 146, 231, 237, 381, 911
Bpu1102I GCTNAGC 2 cut(s) 746, 929
BsaAI YACGTR 3 cut(s) 404, 543, 711
BsaHI GRCGYC 2 cut(s) 278, 548
BsaWI WCCGGW 2 cut(s) 247, 627
BsaXI ACNNNNNCTCC 2 cut(s) 695, 725
Bsc4I CCNNNNNNNGG 3 cut(s) 147, 634, 656
Bse118I RCCGGY 3 cut(s) 280, 589, 634
Bse1I ACTGG 3 cut(s) 90, 645, 866
BseBI CCWGG 1 cut(s) 935
BseLI CCNNNNNNNGG 3 cut(s) 147, 634, 656
BseMII CTCAG 8 cut(s) 160, 245, 372, 737, 828, 858, 902, 920
BseNI ACTGG 3 cut(s) 90, 645, 866
BseRI GAGGAG 2 cut(s) 341, 353
BseSI GKGCMC 1 cut(s) 336
BseX3I CGGCCG 1 cut(s) 787
BseXI GCAGC 3 cut(s) 307, 886, 981
BseYI CCCAGC 1 cut(s) 893
Bsh1285I CGRYCG 3 cut(s) 223, 267, 790
BshFI GGCC 3 cut(s) 151, 346, 789
BsiEI CGRYCG 3 cut(s) 223, 267, 790
BsiHKAI GWGCWC 3 cut(s) 336, 437, 539
BsiHKCI CYCGRG 3 cut(s) 205, 430, 532
BsiSI CCGG 7 cut(s) 248, 281, 386, 488, 590, 628, 635
BslI CCNNNNNNNGG 3 cut(s) 147, 634, 656
BsmAI GTCTC 6 cut(s) 269, 274, 764, 842, 994, 1022
BsmBI CGTCTC 5 cut(s) 269, 274, 764, 842, 1022
BsnI GGCC 3 cut(s) 151, 346, 789
BsoBI CYCGRG 3 cut(s) 205, 430, 532
Bsp1286I GDGCHC 3 cut(s) 336, 437, 539
Bsp143I GATC 5 cut(s) 137, 354, 426, 528, 641
Bsp1720I GCTNAGC 2 cut(s) 746, 929
BspANI GGCC 3 cut(s) 151, 346, 789
BspCNI CTCAG 8 cut(s) 159, 244, 373, 738, 827, 857, 903, 921
BspHI TCATGA 1 cut(s) 322
BspLI GGNNCC 1 cut(s) 212
BspMAI CTGCAG 1 cut(s) 999
BspPI GGATC 2 cut(s) 132, 636
BspQI GCTCTTC 1 cut(s) 758
BsrBI CCGCTC 3 cut(s) 42, 118, 225
BsrFI RCCGGY 3 cut(s) 280, 589, 634
BsrI ACTGG 3 cut(s) 90, 645, 866
BssAI RCCGGY 3 cut(s) 280, 589, 634
BssMI GATC 5 cut(s) 137, 354, 426, 528, 641
BssNI GRCGYC 2 cut(s) 278, 548
BssSI CACGAG 2 cut(s) 119, 335
Bst2BI CACGAG 2 cut(s) 119, 335
Bst2UI CCWGG 1 cut(s) 935
Bst4CI ACNGT 2 cut(s) 268, 1033
Bst6I CTCTTC 3 cut(s) 246, 551, 758
BstACI GRCGYC 2 cut(s) 278, 548
BstBAI YACGTR 3 cut(s) 404, 543, 711
BstC8I GCNNGC 4 cut(s) 227, 282, 348, 752
BstDEI CTNAG 9 cut(s) 146, 231, 237, 381, 746, 814, 844, 911, 929
BstENI CCTNNNNNAGG 1 cut(s) 145
BstHHI GCGC 1 cut(s) 128
BstKTI GATC 5 cut(s) 140, 357, 429, 531, 644
BstMAI GTCTC 6 cut(s) 269, 274, 764, 842, 994, 1022
BstMBI GATC 5 cut(s) 137, 354, 426, 528, 641
BstMCI CGRYCG 3 cut(s) 223, 267, 790
BstMWI GCNNNNNNNGC 4 cut(s) 11, 688, 739, 751
BstNI CCWGG 1 cut(s) 935
BstPAI GACNNNNGTC 1 cut(s) 1006
BstSCI CCNGG 1 cut(s) 933
BstSFI CTRYAG 2 cut(s) 366, 995
BstSLI GKGCMC 1 cut(s) 336
BstV1I GCAGC 3 cut(s) 307, 886, 981
BstV2I GAAGAC 2 cut(s) 420, 522
BstX2I RGATCY 1 cut(s) 641
BstYI RGATCY 1 cut(s) 641
BstZI CGGCCG 1 cut(s) 787
BsuRI GGCC 3 cut(s) 151, 346, 789
BtrI CACGTC 2 cut(s) 774, 828
BtsI GCAGTG 1 cut(s) 825
BtsIMutI CAGTG 2 cut(s) 83, 825
Cac8I GCNNGC 4 cut(s) 227, 282, 348, 752
CaiI CAGNNNCTG 1 cut(s) 380
CciI TCATGA 1 cut(s) 322
CfoI GCGC 1 cut(s) 128
Cfr10I RCCGGY 3 cut(s) 280, 589, 634
CseI GACGC 2 cut(s) 286, 556
Csp6I GTAC 1 cut(s) 401
CviAII CATG 3 cut(s) 323, 757, 1024
CviQI GTAC 1 cut(s) 401
DdeI CTNAG 9 cut(s) 146, 231, 237, 381, 746, 814, 844, 911, 929
DpnI GATC 5 cut(s) 139, 356, 428, 530, 643
DpnII GATC 5 cut(s) 137, 354, 426, 528, 641
EaeI YGGCCR 1 cut(s) 787
EagI CGGCCG 1 cut(s) 787
Eam1104I CTCTTC 3 cut(s) 246, 551, 758
EarI CTCTTC 3 cut(s) 246, 551, 758
Ecl136II GAGCTC 2 cut(s) 435, 537
EclXI CGGCCG 1 cut(s) 787
Eco147I AGGCCT 2 cut(s) 151, 346
Eco24I GRGCYC 2 cut(s) 437, 539
Eco32I GATATC 1 cut(s) 305
Eco52I CGGCCG 1 cut(s) 787
Eco53kI GAGCTC 2 cut(s) 435, 537
Eco57I CTGAAG 2 cut(s) 672, 824
Eco72I CACGTG 2 cut(s) 543, 711
Eco88I CYCGRG 3 cut(s) 205, 430, 532
EcoICRI GAGCTC 2 cut(s) 435, 537
EcoNI CCTNNNNNAGG 1 cut(s) 145
EcoRI GAATTC 1 cut(s) 95
EcoRII CCWGG 1 cut(s) 933
EcoRV GATATC 1 cut(s) 305
EcoT38I GRGCYC 2 cut(s) 437, 539
Esp3I CGTCTC 5 cut(s) 269, 274, 764, 842, 1022
FaeI CATG 3 cut(s) 326, 760, 1027
FaiI YATR 6 cut(s) 68, 159, 324, 758, 968, 1025
FatI CATG 3 cut(s) 322, 756, 1023
FbaI TGATCA 1 cut(s) 354
FblI GTMKAC 1 cut(s) 408
Fnu4HI GCNGC 7 cut(s) 43, 116, 296, 551, 743, 875, 995
FriOI GRGCYC 2 cut(s) 437, 539
Fsp4HI GCNGC 7 cut(s) 43, 116, 296, 551, 743, 875, 995
FspBI CTAG 4 cut(s) 308, 317, 509, 639
GlaI GCGC 1 cut(s) 127
GluI GCNGC 7 cut(s) 43, 116, 296, 551, 743, 875, 995
GsaI CCCAGC 1 cut(s) 897
HaeIII GGCC 3 cut(s) 151, 346, 789
HapII CCGG 7 cut(s) 248, 281, 386, 488, 590, 628, 635
HgaI GACGC 2 cut(s) 286, 556
HhaI GCGC 1 cut(s) 128
Hin1I GRCGYC 2 cut(s) 278, 548
Hin1II CATG 3 cut(s) 326, 760, 1027
Hin6I GCGC 1 cut(s) 126
HinP1I GCGC 1 cut(s) 126
HincII GTYRAC 1 cut(s) 811
HindII GTYRAC 1 cut(s) 811
HinfI GANTC 8 cut(s) 254, 260, 618, 781, 812, 868, 1007, 1015
HpaII CCGG 7 cut(s) 248, 281, 386, 488, 590, 628, 635
HphI GGTGA 3 cut(s) 100, 181, 364
Hpy166II GTNNAC 7 cut(s) 289, 334, 409, 444, 546, 811, 823
Hpy188I TCNGA 6 cut(s) 137, 259, 274, 472, 574, 847
Hpy188III TCNNGA 6 cut(s) 308, 323, 430, 509, 532, 650
Hpy8I GTNNAC 7 cut(s) 289, 334, 409, 444, 546, 811, 823
Hpy99I CGWCG 4 cut(s) 200, 476, 578, 928
HpyAV CCTTC 4 cut(s) 142, 647, 722, 799
HpyCH4III ACNGT 2 cut(s) 268, 1033
HpyCH4IV ACGT 7 cut(s) 165, 403, 542, 710, 773, 827, 851
HpyCH4V TGCA 2 cut(s) 334, 997
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 688, 739, 751
HpyF3I CTNAG 9 cut(s) 146, 231, 237, 381, 746, 814, 844, 911, 929
HpySE526I ACGT 7 cut(s) 165, 403, 542, 710, 773, 827, 851
Hsp92I GRCGYC 2 cut(s) 278, 548
Hsp92II CATG 3 cut(s) 326, 760, 1027
HspAI GCGC 1 cut(s) 126
KroI GCCGGC 1 cut(s) 280
KroNI GCCGGC 1 cut(s) 282
Ksp22I TGATCA 1 cut(s) 354
Kzo9I GATC 5 cut(s) 137, 354, 426, 528, 641
LguI GCTCTTC 1 cut(s) 758
LmnI GCTCC 2 cut(s) 440, 542
Lsp1109I GCAGC 3 cut(s) 307, 886, 981
LweI GCATC 3 cut(s) 189, 729, 896
MaeI CTAG 4 cut(s) 308, 317, 509, 639
MaeII ACGT 7 cut(s) 165, 403, 542, 710, 773, 827, 851
MaeIII GTNAC 1 cut(s) 880
MalI GATC 5 cut(s) 139, 356, 428, 530, 643
MbiI CCGCTC 3 cut(s) 42, 118, 225
MboI GATC 5 cut(s) 137, 354, 426, 528, 641
MboII GAAGA 8 cut(s) 34, 263, 425, 509, 527, 568, 772, 775
MflI RGATCY 1 cut(s) 641
MhlI GDGCHC 3 cut(s) 336, 437, 539
MluCI AATT 2 cut(s) 33, 95
MlyI GAGTC 3 cut(s) 263, 806, 1016
MmeI TCCRAC 2 cut(s) 495, 597
MreI CGCCGGCG 1 cut(s) 280
MroNI GCCGGC 1 cut(s) 280
MroXI GAANNNNTTC 1 cut(s) 501
MseI TTAA 1 cut(s) 393
MspA1I CMGCKG 3 cut(s) 298, 745, 833
MspI CCGG 7 cut(s) 248, 281, 386, 488, 590, 628, 635
MspR9I CCNGG 1 cut(s) 935
MvaI CCWGG 1 cut(s) 935
MwoI GCNNNNNNNGC 4 cut(s) 11, 688, 739, 751
NaeI GCCGGC 1 cut(s) 282
NdeII GATC 5 cut(s) 137, 354, 426, 528, 641
NgoMIV GCCGGC 1 cut(s) 280
NlaIII CATG 3 cut(s) 326, 760, 1027
NlaIV GGNNCC 1 cut(s) 212
NmeAIII GCCGAG 1 cut(s) 977
NmuCI GTSAC 1 cut(s) 880
PaeR7I CTCGAG 3 cut(s) 205, 430, 532
PagI TCATGA 1 cut(s) 322
PceI AGGCCT 2 cut(s) 151, 346
PciSI GCTCTTC 1 cut(s) 758
PcsI WCGNNNNNNNCGW 2 cut(s) 539, 716
PdiI GCCGGC 1 cut(s) 282
PdmI GAANNNNTTC 1 cut(s) 501
PfeI GAWTC 5 cut(s) 260, 618, 781, 868, 1015
PkrI GCNGC 7 cut(s) 44, 117, 297, 552, 744, 876, 996
PleI GAGTC 3 cut(s) 262, 806, 1015
PmaCI CACGTG 2 cut(s) 543, 711
PmlI CACGTG 2 cut(s) 543, 711
PpsI GAGTC 3 cut(s) 262, 806, 1015
Ppu21I YACGTR 3 cut(s) 404, 543, 711
PshAI GACNNNNGTC 1 cut(s) 1006
Psp124BI GAGCTC 2 cut(s) 437, 539
Psp6I CCWGG 1 cut(s) 933
PspCI CACGTG 2 cut(s) 543, 711
PspFI CCCAGC 1 cut(s) 893
PspGI CCWGG 1 cut(s) 933
PspN4I GGNNCC 1 cut(s) 212
PspXI VCTCGAGB 1 cut(s) 205
PstI CTGCAG 1 cut(s) 999
PstNI CAGNNNCTG 1 cut(s) 380
PsuI RGATCY 1 cut(s) 641
RsaI GTAC 1 cut(s) 402
RsaNI GTAC 1 cut(s) 401
SacI GAGCTC 2 cut(s) 437, 539
SapI GCTCTTC 1 cut(s) 758
SaqAI TTAA 1 cut(s) 393
SatI GCNGC 7 cut(s) 43, 116, 296, 551, 743, 875, 995
Sau3AI GATC 5 cut(s) 137, 354, 426, 528, 641
SchI GAGTC 3 cut(s) 263, 806, 1016
ScrFI CCNGG 1 cut(s) 935
SduI GDGCHC 3 cut(s) 336, 437, 539
SfaNI GCATC 3 cut(s) 189, 729, 896
SfcI CTRYAG 2 cut(s) 366, 995
Sfr274I CTCGAG 3 cut(s) 205, 430, 532
SgrAI CRCCGGYG 2 cut(s) 280, 589
SlaI CTCGAG 3 cut(s) 205, 430, 532
SmlI CTYRAG 3 cut(s) 205, 430, 532
SmoI CTYRAG 3 cut(s) 205, 430, 532
Sse9I AATT 2 cut(s) 33, 95
SseBI AGGCCT 2 cut(s) 151, 346
SspMI CTAG 4 cut(s) 308, 317, 509, 639
SstI GAGCTC 2 cut(s) 437, 539
StuI AGGCCT 2 cut(s) 151, 346
StyD4I CCNGG 1 cut(s) 933
TaaI ACNGT 2 cut(s) 268, 1033
TaiI ACGT 7 cut(s) 168, 406, 545, 713, 776, 830, 854
TaqI TCGA 6 cut(s) 38, 206, 263, 431, 533, 737
TasI AATT 2 cut(s) 33, 95
TauI GCSGC 4 cut(s) 45, 118, 553, 745
TfiI GAWTC 5 cut(s) 260, 618, 781, 868, 1015
Tru1I TTAA 1 cut(s) 393
Tru9I TTAA 1 cut(s) 393
TscAI CASTG 2 cut(s) 90, 825
TseFI GTSAC 1 cut(s) 880
TseI GCWGC 3 cut(s) 295, 874, 994
Tsp45I GTSAC 1 cut(s) 880
TspDTI ATGAA 7 cut(s) 83, 311, 479, 528, 581, 773, 955
TspGWI ACGGA 3 cut(s) 67, 144, 740
TspRI CASTG 2 cut(s) 90, 825
VneI GTGCAC 1 cut(s) 332
XagI CCTNNNNNAGG 1 cut(s) 145
XapI RAATTY 1 cut(s) 95
XbaI TCTAGA 2 cut(s) 307, 508
XhoI CTCGAG 3 cut(s) 205, 430, 532
XmiI GTMKAC 1 cut(s) 408
XmnI GAANNNNTTC 1 cut(s) 501
XspI CTAG 4 cut(s) 308, 317, 509, 639
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.