Rmu_sc0011154.1_g000002

Domain of unknown function (DUF4408)

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011154.1
Physical Location & Seq
Forward (+)
6283 .. 7776
1494 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011154.1_g000002.1.cds

Sequence Viewer

Length: 1059 bp
atggcgtggttggtgtcgttgaagattctgttgatttcgagcggcgttgtggctttggctttggccatgcagctctatgttccgttggtgtttgagttcgccgtctcaaaccttcctctgatctggagctcatgcaaatccttgctccgcccgccgtatctctacgtcgtcatcaacgccatcatcatcaccattgccgcctcctcaatgttccaccatgaccggcctcaggcaaagcttccttccccggagtctgaatcaacgccacctccggttgtatacaagcacagagaagatgacgtggcgccaccggtggtgtacaagcatatacaagaggatgtggcgccacaggtgtacaagcacagaagagaagaggatgtggcggcgtcaccggttgtgtacgatgacagagaggaggccgtgattaaggaggtgacgtctatggtaccatttaacaaccctgaagagcctgtggctgaggttgataatgatcttgaggatgagatcgaggtctcgacagccacgtggacgacgccggagaatactactaaattcgatgatattattttgccggcggagaagcctccagtctcttcgagattcagtcaccggaaacctgctagatccacccctgaaggtgggaggccgttacgagtgtccaaggcgccaaaacggcacgacacgttggagaacacgtggaagatgataacggaggggcgtgcgatgccgttgagccggcacatcaagaagagcgacacgtgggatcatcacggtagcggaggtgtcaacgttaacgatgaagtggacgaggagacgtcagaagcagtgcaacagtcaaagacgtttaaggacatgacgaaccagcagaaggtgaggaccatggcagctgtgagttcctcgccgggagggattaagctgaggaaagagccgtcgctgagtcaggacgatttgaaccgccgagtcgaggcgtttatacagaagttcaacgaagaaatgaggttgcagagacaggagtcattggatcagtacatggagatgatcaaccgtggaagccattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

352

Amino Acids

39.8

Weight (kDa)

5.63

Isoelectric Point (pI)

63.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0011830)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 440, 818
Acc36I ACCTGC 1 cut(s) 625
Acc65I GGTACC 1 cut(s) 445
AccB1I GGYRCC 4 cut(s) 304, 343, 445, 664
AccBSI CCGCTC 1 cut(s) 42
AccI GTMKAC 1 cut(s) 279
AciI CCGC 8 cut(s) 42, 148, 152, 198, 383, 575, 777, 955
AclI AACGTT 1 cut(s) 789
AclWI GGATC 3 cut(s) 618, 771, 1029
AcoI YGGCCR 1 cut(s) 63
AcsI RAATTY 1 cut(s) 551
AcuI CTGAAG 2 cut(s) 483, 654
AcvI CACGTG 3 cut(s) 525, 696, 759
AcyI GRCGYC 7 cut(s) 305, 344, 386, 437, 533, 665, 815
AfaI GTAC 5 cut(s) 320, 356, 401, 447, 1028
AfiI CCNNNNNNNGG 4 cut(s) 229, 638, 868, 964
AflIII ACRYGT 3 cut(s) 681, 693, 756
AgeI ACCGGT 2 cut(s) 310, 391
AgsI TTSAA 3 cut(s) 22, 952, 985
AjiI CACGTC 1 cut(s) 301
AluBI AGCT 5 cut(s) 73, 129, 238, 887, 916
AluI AGCT 5 cut(s) 73, 129, 238, 887, 916
Alw21I GWGCWC 1 cut(s) 131
Alw26I GTCTC 5 cut(s) 109, 517, 595, 806, 1000
AlwI GGATC 3 cut(s) 618, 771, 1029
AoxI GGCC 4 cut(s) 63, 224, 417, 644
ApeKI GCWGC 2 cut(s) 70, 884
ApoI RAATTY 1 cut(s) 551
AsiGI ACCGGT 2 cut(s) 310, 391
Asp718I GGTACC 1 cut(s) 445
AspLEI GCGC 3 cut(s) 307, 346, 667
AspS9I GGNCC 1 cut(s) 876
AsuC2I CCSGG 2 cut(s) 248, 903
AsuHPI GGTGA 5 cut(s) 181, 381, 445, 599, 883
AvaII GGWCC 1 cut(s) 876
AxyI CCTNAGG 1 cut(s) 228
BalI TGGCCA 1 cut(s) 65
BanI GGYRCC 4 cut(s) 304, 343, 445, 664
BanII GRGCYC 1 cut(s) 131
BbrPI CACGTG 3 cut(s) 525, 696, 759
Bbv12I GWGCWC 1 cut(s) 131
BbvCI CCTCAGC 2 cut(s) 477, 917
BbvI GCAGC 2 cut(s) 82, 896
BccI CCATC 1 cut(s) 188
BceAI ACGGC 7 cut(s) 86, 139, 404, 631, 689, 712, 913
BclI TGATCA 1 cut(s) 1038
BcnI CCSGG 2 cut(s) 248, 903
BcoDI GTCTC 5 cut(s) 109, 517, 595, 806, 1000
BfaI CTAG 1 cut(s) 621
BfoI RGCGCY 3 cut(s) 308, 347, 668
BfuAI ACCTGC 1 cut(s) 625
BglI GCCNNNNNGGC 1 cut(s) 673
BisI GCNGC 5 cut(s) 43, 71, 198, 384, 885
BlsI GCNGC 5 cut(s) 44, 72, 199, 385, 886
Bme1390I CCNGG 2 cut(s) 248, 903
Bme18I GGWCC 1 cut(s) 876
BmgBI CACGTC 1 cut(s) 301
BmgT120I GGNCC 1 cut(s) 876
BmiI GGNNCC 4 cut(s) 306, 345, 447, 666
BmrFI CCNGG 2 cut(s) 248, 903
BmsI GCATC 1 cut(s) 714
BoxI GACNNNNGTC 1 cut(s) 1012
BpmI CTGGAG 2 cut(s) 145, 570
Bpu10I CCTNAGC 2 cut(s) 477, 917
BpuEI CTTGAG 1 cut(s) 515
BpuMI CCSGG 2 cut(s) 248, 903
BsaAI YACGTR 3 cut(s) 525, 696, 759
BsaBI GATNNNNATC 1 cut(s) 489
BsaHI GRCGYC 7 cut(s) 305, 344, 386, 437, 533, 665, 815
BsaI GGTCTC 1 cut(s) 517
BsaJI CCNNGG 4 cut(s) 246, 660, 879, 1045
BsaWI WCCGGW 4 cut(s) 271, 310, 391, 609
BsaXI ACNNNNNCTCC 6 cut(s) 253, 283, 422, 452, 680, 710
Bsc4I CCNNNNNNNGG 4 cut(s) 229, 638, 868, 964
Bse118I RCCGGY 5 cut(s) 222, 310, 391, 571, 735
Bse1I ACTGG 1 cut(s) 587
Bse21I CCTNAGG 1 cut(s) 228
Bse3DI GCAATG 1 cut(s) 192
Bse8I GATNNNNATC 1 cut(s) 489
BseDI CCNNGG 4 cut(s) 246, 660, 879, 1045
BseGI GGATG 3 cut(s) 343, 382, 505
BseJI GATNNNNATC 1 cut(s) 489
BseLI CCNNNNNNNGG 4 cut(s) 229, 638, 868, 964
BseMI GCAATG 1 cut(s) 192
BseMII CTCAG 4 cut(s) 242, 468, 908, 926
BseNI ACTGG 1 cut(s) 587
BseRI GAGGAG 3 cut(s) 193, 428, 824
BseXI GCAGC 2 cut(s) 82, 896
BshFI GGCC 4 cut(s) 65, 226, 419, 646
BshNI GGYRCC 4 cut(s) 304, 343, 445, 664
BshTI ACCGGT 2 cut(s) 310, 391
BsiHKAI GWGCWC 1 cut(s) 131
BslI CCNNNNNNNGG 4 cut(s) 229, 638, 868, 964
BsmAI GTCTC 5 cut(s) 109, 517, 595, 806, 1000
BsmBI CGTCTC 2 cut(s) 109, 806
BsnI GGCC 4 cut(s) 65, 226, 419, 646
Bso31I GGTCTC 1 cut(s) 517
Bsp1286I GDGCHC 1 cut(s) 131
Bsp1407I TGTACA 2 cut(s) 318, 354
Bsp143I GATC 7 cut(s) 120, 490, 504, 623, 763, 1021, 1038
Bsp19I CCATGG 1 cut(s) 879
BspACI CCGC 8 cut(s) 42, 148, 152, 198, 383, 575, 777, 955
BspANI GGCC 4 cut(s) 65, 226, 419, 646
BspCNI CTCAG 4 cut(s) 241, 469, 909, 927
BspLI GGNNCC 4 cut(s) 306, 345, 447, 666
BspMI ACCTGC 1 cut(s) 625
BspPI GGATC 3 cut(s) 618, 771, 1029
BspQI GCTCTTC 2 cut(s) 459, 743
BspT107I GGYRCC 4 cut(s) 304, 343, 445, 664
BspTNI GGTCTC 1 cut(s) 517
BsrBI CCGCTC 1 cut(s) 42
BsrDI GCAATG 1 cut(s) 192
BsrFI RCCGGY 5 cut(s) 222, 310, 391, 571, 735
BsrGI TGTACA 2 cut(s) 318, 354
BsrI ACTGG 1 cut(s) 587
BssAI RCCGGY 5 cut(s) 222, 310, 391, 571, 735
BssECI CCNNGG 4 cut(s) 246, 660, 879, 1045
BssMI GATC 7 cut(s) 120, 490, 504, 623, 763, 1021, 1038
BssNAI GTATAC 1 cut(s) 280
BssNI GRCGYC 7 cut(s) 305, 344, 386, 437, 533, 665, 815
BssT1I CCWWGG 2 cut(s) 660, 879
Bst1107I GTATAC 1 cut(s) 280
Bst4CI ACNGT 3 cut(s) 773, 834, 1046
Bst6I CTCTTC 5 cut(s) 361, 366, 459, 598, 743
BstACI GRCGYC 7 cut(s) 305, 344, 386, 437, 533, 665, 815
BstAUI TGTACA 2 cut(s) 318, 354
BstBAI YACGTR 3 cut(s) 525, 696, 759
BstC8I GCNNGC 4 cut(s) 152, 573, 720, 737
BstDEI CTNAG 4 cut(s) 228, 477, 917, 935
BstDSI CCRYGG 2 cut(s) 879, 1045
BstF5I GGATG 3 cut(s) 343, 382, 505
BstH2I RGCGCY 3 cut(s) 308, 347, 668
BstHHI GCGC 3 cut(s) 307, 346, 667
BstKTI GATC 7 cut(s) 123, 493, 507, 626, 766, 1024, 1041
BstMAI GTCTC 5 cut(s) 109, 517, 595, 806, 1000
BstMBI GATC 7 cut(s) 120, 490, 504, 623, 763, 1021, 1038
BstMWI GCNNNNNNNGC 3 cut(s) 151, 673, 724
BstPAI GACNNNNGTC 1 cut(s) 1012
BstSCI CCNGG 2 cut(s) 246, 901
BstV1I GCAGC 2 cut(s) 82, 896
BstX2I RGATCY 1 cut(s) 623
BstYI RGATCY 1 cut(s) 623
BstZ17I GTATAC 1 cut(s) 280
Bsu36I CCTNAGG 1 cut(s) 228
BsuRI GGCC 4 cut(s) 65, 226, 419, 646
BtgI CCRYGG 2 cut(s) 879, 1045
BtgZI GCGATG 1 cut(s) 737
BtrI CACGTC 1 cut(s) 301
BtsCI GGATG 3 cut(s) 343, 382, 505
BtsI GCAGTG 1 cut(s) 831
BtsIMutI CAGTG 1 cut(s) 831
BveI ACCTGC 1 cut(s) 625
Cac8I GCNNGC 4 cut(s) 152, 573, 720, 737
CfoI GCGC 3 cut(s) 307, 346, 667
Cfr10I RCCGGY 5 cut(s) 222, 310, 391, 571, 735
Cfr13I GGNCC 1 cut(s) 876
CseI GACGC 2 cut(s) 375, 541
Csp6I GTAC 5 cut(s) 319, 355, 400, 446, 1027
CspAI ACCGGT 2 cut(s) 310, 391
CviAII CATG 6 cut(s) 67, 132, 218, 853, 880, 1030
CviQI GTAC 5 cut(s) 319, 355, 400, 446, 1027
DdeI CTNAG 4 cut(s) 228, 477, 917, 935
DinI GGCGCC 3 cut(s) 306, 345, 666
DpnI GATC 7 cut(s) 122, 492, 506, 625, 765, 1023, 1040
DpnII GATC 7 cut(s) 120, 490, 504, 623, 763, 1021, 1038
EaeI YGGCCR 1 cut(s) 63
Eam1104I CTCTTC 5 cut(s) 361, 366, 459, 598, 743
EarI CTCTTC 5 cut(s) 361, 366, 459, 598, 743
EciI GGCGGA 2 cut(s) 137, 590
Ecl136II GAGCTC 1 cut(s) 129
Eco130I CCWWGG 2 cut(s) 660, 879
Eco24I GRGCYC 1 cut(s) 131
Eco31I GGTCTC 1 cut(s) 517
Eco47I GGWCC 1 cut(s) 876
Eco53kI GAGCTC 1 cut(s) 129
Eco57I CTGAAG 2 cut(s) 483, 654
Eco72I CACGTG 3 cut(s) 525, 696, 759
Eco81I CCTNAGG 1 cut(s) 228
EcoICRI GAGCTC 1 cut(s) 129
EcoT14I CCWWGG 2 cut(s) 660, 879
EcoT38I GRGCYC 1 cut(s) 131
EgeI GGCGCC 3 cut(s) 306, 345, 666
EheI GGCGCC 3 cut(s) 306, 345, 666
ErhI CCWWGG 2 cut(s) 660, 879
Esp3I CGTCTC 2 cut(s) 109, 806
FaeI CATG 6 cut(s) 70, 135, 221, 856, 883, 1033
FatI CATG 6 cut(s) 66, 131, 217, 852, 879, 1029
FauI CCCGC 1 cut(s) 159
FbaI TGATCA 1 cut(s) 1038
FblI GTMKAC 1 cut(s) 279
Fnu4HI GCNGC 5 cut(s) 43, 71, 198, 384, 885
FokI GGATG 3 cut(s) 350, 389, 512
FriOI GRGCYC 1 cut(s) 131
Fsp4HI GCNGC 5 cut(s) 43, 71, 198, 384, 885
FspBI CTAG 1 cut(s) 621
GlaI GCGC 3 cut(s) 306, 345, 666
GluI GCNGC 5 cut(s) 43, 71, 198, 384, 885
GsuI CTGGAG 2 cut(s) 145, 570
HaeII RGCGCY 3 cut(s) 308, 347, 668
HaeIII GGCC 4 cut(s) 65, 226, 419, 646
HgaI GACGC 2 cut(s) 375, 541
HhaI GCGC 3 cut(s) 307, 346, 667
Hin1I GRCGYC 7 cut(s) 305, 344, 386, 437, 533, 665, 815
Hin1II CATG 6 cut(s) 70, 135, 221, 856, 883, 1033
Hin6I GCGC 3 cut(s) 305, 344, 665
HinP1I GCGC 3 cut(s) 305, 344, 665
HincII GTYRAC 2 cut(s) 787, 793
HindII GTYRAC 2 cut(s) 787, 793
HindIII AAGCTT 1 cut(s) 236
HinfI GANTC 7 cut(s) 25, 251, 257, 600, 937, 960, 1013
HpaI GTTAAC 1 cut(s) 793
HphI GGTGA 5 cut(s) 181, 381, 445, 599, 883
Hpy166II GTNNAC 8 cut(s) 280, 319, 355, 400, 528, 787, 793, 805
Hpy188I TCNGA 3 cut(s) 120, 256, 820
Hpy188III TCNNGA 6 cut(s) 124, 494, 514, 597, 745, 941
Hpy8I GTNNAC 8 cut(s) 280, 319, 355, 400, 528, 787, 793, 805
Hpy99I CGWCG 3 cut(s) 170, 535, 934
HpyAV CCTTC 4 cut(s) 122, 252, 629, 862
HpyCH4III ACNGT 3 cut(s) 773, 834, 1046
HpyCH4V TGCA 4 cut(s) 70, 135, 829, 1003
HpyF10VI GCNNNNNNNGC 3 cut(s) 151, 673, 724
HpyF3I CTNAG 4 cut(s) 228, 477, 917, 935
Hsp92I GRCGYC 7 cut(s) 305, 344, 386, 437, 533, 665, 815
Hsp92II CATG 6 cut(s) 70, 135, 221, 856, 883, 1033
HspAI GCGC 3 cut(s) 305, 344, 665
KasI GGCGCC 3 cut(s) 304, 343, 664
KpnI GGTACC 1 cut(s) 449
KroI GCCGGC 2 cut(s) 571, 735
KroNI GCCGGC 2 cut(s) 573, 737
Ksp22I TGATCA 1 cut(s) 1038
KspAI GTTAAC 1 cut(s) 793
Kzo9I GATC 7 cut(s) 120, 490, 504, 623, 763, 1021, 1038
LguI GCTCTTC 2 cut(s) 459, 743
LmnI GCTCC 2 cut(s) 126, 150
Lsp1109I GCAGC 2 cut(s) 82, 896
LweI GCATC 1 cut(s) 714
MaeI CTAG 1 cut(s) 621
MaeIII GTNAC 4 cut(s) 387, 433, 605, 648
MalI GATC 7 cut(s) 122, 492, 506, 625, 765, 1023, 1040
MbiI CCGCTC 1 cut(s) 42
MboI GATC 7 cut(s) 120, 490, 504, 623, 763, 1021, 1038
MboII GAAGA 9 cut(s) 34, 305, 378, 383, 476, 585, 712, 760, 1001
MflI RGATCY 1 cut(s) 623
MhlI GDGCHC 1 cut(s) 131
MlsI TGGCCA 1 cut(s) 65
MluCI AATT 1 cut(s) 551
MluNI TGGCCA 1 cut(s) 65
Mly113I GGCGCC 3 cut(s) 305, 344, 665
MlyI GAGTC 4 cut(s) 260, 946, 969, 1022
MmeI TCCRAC 1 cut(s) 666
Mox20I TGGCCA 1 cut(s) 65
MroNI GCCGGC 2 cut(s) 571, 735
MscI TGGCCA 1 cut(s) 65
MseI TTAA 5 cut(s) 426, 453, 792, 846, 912
MslI CAYNNNNRTG 1 cut(s) 1034
Msp20I TGGCCA 1 cut(s) 65
MspA1I CMGCKG 1 cut(s) 887
MspR9I CCNGG 2 cut(s) 248, 903
MwoI GCNNNNNNNGC 3 cut(s) 151, 673, 724
NaeI GCCGGC 2 cut(s) 573, 737
NarI GGCGCC 3 cut(s) 305, 344, 665
NciI CCSGG 2 cut(s) 248, 903
NcoI CCATGG 1 cut(s) 879
NdeII GATC 7 cut(s) 120, 490, 504, 623, 763, 1021, 1038
NgoMIV GCCGGC 2 cut(s) 571, 735
NlaIII CATG 6 cut(s) 70, 135, 221, 856, 883, 1033
NlaIV GGNNCC 4 cut(s) 306, 345, 447, 666
NmeAIII GCCGAG 1 cut(s) 983
NmuCI GTSAC 3 cut(s) 387, 433, 605
PciSI GCTCTTC 2 cut(s) 459, 743
PcsI WCGNNNNNNNCGW 1 cut(s) 521
PdiI GCCGGC 2 cut(s) 573, 737
PfeI GAWTC 3 cut(s) 25, 257, 600
PinAI ACCGGT 2 cut(s) 310, 391
PkrI GCNGC 5 cut(s) 44, 72, 199, 385, 886
PleI GAGTC 4 cut(s) 259, 945, 968, 1021
PluTI GGCGCC 3 cut(s) 308, 347, 668
PmaCI CACGTG 3 cut(s) 525, 696, 759
PmlI CACGTG 3 cut(s) 525, 696, 759
PpsI GAGTC 4 cut(s) 259, 945, 968, 1021
Ppu21I YACGTR 3 cut(s) 525, 696, 759
PshAI GACNNNNGTC 1 cut(s) 1012
Psp124BI GAGCTC 1 cut(s) 131
Psp1406I AACGTT 1 cut(s) 789
PspCI CACGTG 3 cut(s) 525, 696, 759
PspN4I GGNNCC 4 cut(s) 306, 345, 447, 666
PspPI GGNCC 1 cut(s) 876
PsuI RGATCY 1 cut(s) 623
PvuII CAGCTG 1 cut(s) 887
RsaI GTAC 5 cut(s) 320, 356, 401, 447, 1028
RsaNI GTAC 5 cut(s) 319, 355, 400, 446, 1027
RseI CAYNNNNRTG 1 cut(s) 1034
SacI GAGCTC 1 cut(s) 131
SapI GCTCTTC 2 cut(s) 459, 743
SaqAI TTAA 5 cut(s) 426, 453, 792, 846, 912
SatI GCNGC 5 cut(s) 43, 71, 198, 384, 885
Sau3AI GATC 7 cut(s) 120, 490, 504, 623, 763, 1021, 1038
Sau96I GGNCC 1 cut(s) 876
SchI GAGTC 4 cut(s) 260, 946, 969, 1022
ScrFI CCNGG 2 cut(s) 248, 903
SduI GDGCHC 1 cut(s) 131
SfaNI GCATC 1 cut(s) 714
SfoI GGCGCC 3 cut(s) 306, 345, 666
SgrAI CRCCGGYG 1 cut(s) 310
SinI GGWCC 1 cut(s) 876
SmiMI CAYNNNNRTG 1 cut(s) 1034
SmlI CTYRAG 1 cut(s) 494
SmoI CTYRAG 1 cut(s) 494
Sse9I AATT 1 cut(s) 551
SsiI CCGC 8 cut(s) 42, 148, 152, 198, 383, 575, 777, 955
SspDI GGCGCC 3 cut(s) 304, 343, 664
SspMI CTAG 1 cut(s) 621
SstI GAGCTC 1 cut(s) 131
StyD4I CCNGG 2 cut(s) 246, 901
StyI CCWWGG 2 cut(s) 660, 879
TaaI ACNGT 3 cut(s) 773, 834, 1046
TaqI TCGA 6 cut(s) 38, 507, 515, 555, 596, 963
TasI AATT 1 cut(s) 551
TatI WGTACW 3 cut(s) 318, 354, 1026
TauI GCSGC 3 cut(s) 45, 200, 386
TfiI GAWTC 3 cut(s) 25, 257, 600
Tru1I TTAA 5 cut(s) 426, 453, 792, 846, 912
Tru9I TTAA 5 cut(s) 426, 453, 792, 846, 912
TscAI CASTG 1 cut(s) 831
TseFI GTSAC 3 cut(s) 387, 433, 605
TseI GCWGC 2 cut(s) 70, 884
Tsp45I GTSAC 3 cut(s) 387, 433, 605
TspDTI ATGAA 1 cut(s) 813
TspGWI ACGGA 2 cut(s) 72, 725
TspRI CASTG 1 cut(s) 831
VpaK11BI GGWCC 1 cut(s) 876
XapI RAATTY 1 cut(s) 551
XmiI GTMKAC 1 cut(s) 279
XspI CTAG 1 cut(s) 621
ZraI GACGTC 2 cut(s) 438, 816
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.