AT1G62200

Protein NRT1 PTR FAMILY

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
22980934 .. 22984422
3489 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G62200.1

Sequence Viewer

Length: 1773 bp
ATGGTGAATTCGAATGAAGAAGACGAAAGGAGAATTCTTGACGTTGAAGAATCTCTTCTTACACAGGAGGAAGTGAACAATCACTTGACCGGATTGTCTTCTACAGCTGAAGATGGTTCTATTGACATTTATGGAAACCCACCATCGAAGAAGAAGACAGGAAACTGGAAAGCTTGTCCCTTTATTCTTGGAAACGAATGTTGTGAGAGATTAGCTTACTATGGAATTGCCAAGAATCTAATCACTTACTACACAAGTGAATTACACGAGTCCAATGTTTCTGCAGCTAGTGACGTTATGATTTGGCAAGGAACTTGCTATATCACACCTCTCATTGGAGCTGTTATAGCTGATTCTTACTGGGGAAGATACTGGACCATTGCTTCTTTCTCTGCTATTTATTTCATTGGAATGGCTTTGTTGACACTCTCGGCTTCACTTCCGGTTTTAAAGCCAGCGGCATGTGCTGGCGTTGCTGCGGCTCTATGCTCACCAGCAACAACGGTTCAGTATGCGGTTTTCTTTACAGGGCTTTACCTTATTGCTCTTGGTACTGGAGGTATCAAACCATGTGTATCATCTTTTGGTGCTGATCAGTTTGATGATACTGACCCGAGGGAACGAGTTAGAAAAGCTTCTTTCTTTAACTGGTTTTACTTCTCCATCAACATTGGTTCATTTATCTCATCCACTTTGTTAGTTTGGGTTCAAGAAAATGTCGGGTGGGGACTCGGTTTCTTGATTCCCACCGTGTTTATGGGAGTCTCTATTGCGAGTTTCTTCATTGGAACTCCGCTTTATCGGTTTCAGAAACCGGGAGGTAGTCCGATTACTAGAGTTTGCCAAGTTCTTGTAGCTGCATACCGTAAATTGAAGCTTAATCTCCCTGAAGATATCTCATTTCTGTATGAAACACGAGAGAAAAACTCCATGATTGCTGGAAGCAGGAAGATTCAACACACTGACGGTTACAAGTTTCTTGACAAAGCTGCTGTTATCTCAGAATATGAATCTAAATCCGGTGCTTTTTCCAACCCATGGAAGCTATGTACTGTAACTCAAGTCGAAGAAGTTAAGACTCTAATCCGTATGTTTCCAATCTGGGCCTCGGGGATCGTCTACTCGGTCCTATATTCACAGATTTCCACTCTATTCGTGCAACAAGGACGGTCCATGAACCGAATAATCCGTTCTTTCGAGATCCCTCCTGCTTCATTCGGGGTTTTCGACACACTTATCGTGCTCATATCCATCCCAATATATGACCGTTTCCTCGTACCCTTTGTAAGACGGTTCACAGGGATACCAAAAGGGTTAACTGATCTGCAGCGAATGGGCATTGGTCTTTTTCTCTCTGTCCTAAGCATTGCAGCTGCAGCTATTGTTGAGACAGTGCGGTTGCAGCTTGCTCAAGACTTTGTTGCAATGAGCATATTTTGGCAGATCCCTCAGTACATACTAATGGGAATAGCAGAGGTCTTTTTCTTCATTGGTCGAGTTGAGTTTTTCTATGATGAATCTCCTGATGCAATGAGAAGTGTATGCAGCGCTTTGGCACTACTCAATACCGCAGTCGGAAGCTACCTGAGCTCGTTGATCCTCACTCTTGTGGCGTATTTCACAGCTCTTGGAGGTAAAGATGGTTGGGTTCCAGACGACCTTAATAAAGGACATCTTGACTACTTCTTCTGGCTTTTGGTCTCTCTTGGACTTGTCAACATTCCTGTTTATGCCTTGATTTGTGTTAAGCACACAAAGAAGAAGGCTTTGTAA

Protein Analysis

590

Amino Acids

65.5

Weight (kDa)

6.56

Isoelectric Point (pI)

30.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTR2 PF00854 124 - 550 5.5e-139 POT family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 94
AccB7I CCANNNNNTGG 1 cut(s) 1038
AccI GTMKAC 1 cut(s) 1119
AciI CCGC 6 cut(s) 458, 479, 515, 794, 1396, 1569
AclWI GGATC 4 cut(s) 1121, 1195, 1438, 1591
AcsI RAATTY 2 cut(s) 7, 33
AcuI CTGAAG 2 cut(s) 129, 909
AfaI GTAC 4 cut(s) 553, 1051, 1278, 1454
AfeI AGCGCT 1 cut(s) 1549
AfiI CCNNNNNNNGG 2 cut(s) 335, 1038
AgsI TTSAA 4 cut(s) 47, 710, 874, 956
AleI CACNNNNGTG 1 cut(s) 1607
Alw21I GWGCWC 2 cut(s) 1245, 1592
Alw26I GTCTC 3 cut(s) 769, 1382, 1705
AlwI GGATC 4 cut(s) 1121, 1195, 1438, 1591
Ama87I CYCGRG 2 cut(s) 613, 1108
Aor51HI AGCGCT 1 cut(s) 1549
AoxI GGCC 1 cut(s) 1104
ApoI RAATTY 2 cut(s) 7, 33
Asp700I GAANNNNTTC 2 cut(s) 54, 634
AspLEI GCGC 1 cut(s) 1550
AspS9I GGNCC 4 cut(s) 375, 1104, 1126, 1170
AsuC2I CCSGG 1 cut(s) 816
AsuHPI GGTGA 2 cut(s) 16, 483
AsuII TTCGAA 1 cut(s) 11
AvaI CYCGRG 2 cut(s) 613, 1108
AvaII GGWCC 3 cut(s) 375, 1126, 1170
BanII GRGCYC 1 cut(s) 1592
BauI CACGAG 2 cut(s) 266, 915
BbsI GAAGAC 3 cut(s) 27, 90, 161
Bbv12I GWGCWC 2 cut(s) 1245, 1592
BccI CCATC 5 cut(s) 107, 151, 671, 1259, 1634
BciVI GTATCC 1 cut(s) 1296
BclI TGATCA 1 cut(s) 592
BcnI CCSGG 1 cut(s) 816
BcoDI GTCTC 3 cut(s) 769, 1382, 1705
BfaI CTAG 2 cut(s) 288, 834
BfmI CTRYAG 4 cut(s) 102, 282, 1325, 1374
BfoI RGCGCY 1 cut(s) 1551
BfuI GTATCC 1 cut(s) 1296
Bme1390I CCNGG 1 cut(s) 816
Bme18I GGWCC 3 cut(s) 375, 1126, 1170
BmeT110I CYCGRG 2 cut(s) 613, 1108
BmgT120I GGNCC 4 cut(s) 375, 1104, 1126, 1170
BmiI GGNNCC 1 cut(s) 1650
BmrFI CCNGG 1 cut(s) 816
BmrI ACTGGG 1 cut(s) 370
BmsI GCATC 1 cut(s) 1516
BmuI ACTGGG 1 cut(s) 370
BpiI GAAGAC 3 cut(s) 27, 90, 161
BplI GAGNNNNNCTC 2 cut(s) 911, 943
BpmI CTGGAG 1 cut(s) 576
Bpu10I CCTNAGC 2 cut(s) 1361, 1586
Bpu14I TTCGAA 1 cut(s) 11
BpuEI CTTGAG 2 cut(s) 1044, 1395
BpuMI CCSGG 1 cut(s) 816
BsaI GGTCTC 1 cut(s) 1705
BsaJI CCNNGG 3 cut(s) 614, 1037, 1107
BsaWI WCCGGW 3 cut(s) 89, 442, 1019
Bsc4I CCNNNNNNNGG 2 cut(s) 335, 1038
Bse1I ACTGG 5 cut(s) 170, 365, 377, 559, 653
Bse3DI GCAATG 4 cut(s) 378, 1365, 1431, 1536
BseDI CCNNGG 3 cut(s) 614, 1037, 1107
BseGI GGATG 2 cut(s) 686, 1251
BseLI CCNNNNNNNGG 2 cut(s) 335, 1038
BseMI GCAATG 4 cut(s) 378, 1365, 1431, 1536
BseMII CTCAG 3 cut(s) 1014, 1463, 1577
BseNI ACTGG 5 cut(s) 170, 365, 377, 559, 653
BshFI GGCC 1 cut(s) 1106
BsiHKAI GWGCWC 2 cut(s) 1245, 1592
BsiHKCI CYCGRG 2 cut(s) 613, 1108
BsiSI CCGG 4 cut(s) 90, 443, 815, 1020
BslFI GGGAC 2 cut(s) 162, 741
BslI CCNNNNNNNGG 2 cut(s) 335, 1038
BsmAI GTCTC 3 cut(s) 769, 1382, 1705
BsmFI GGGAC 2 cut(s) 162, 741
BsnI GGCC 1 cut(s) 1106
Bso31I GGTCTC 1 cut(s) 1705
BsoBI CYCGRG 2 cut(s) 613, 1108
Bsp119I TTCGAA 1 cut(s) 11
Bsp1286I GDGCHC 2 cut(s) 1245, 1592
Bsp143I GATC 6 cut(s) 592, 1113, 1200, 1321, 1443, 1596
Bsp19I CCATGG 1 cut(s) 1037
BspACI CCGC 6 cut(s) 458, 479, 515, 794, 1396, 1569
BspANI GGCC 1 cut(s) 1106
BspCNI CTCAG 3 cut(s) 1013, 1462, 1578
BspLI GGNNCC 1 cut(s) 1650
BspMAI CTGCAG 3 cut(s) 286, 1329, 1378
BspPI GGATC 4 cut(s) 1121, 1195, 1438, 1591
BspT104I TTCGAA 1 cut(s) 11
BspTNI GGTCTC 1 cut(s) 1705
BsrDI GCAATG 4 cut(s) 378, 1365, 1431, 1536
BsrI ACTGG 5 cut(s) 170, 365, 377, 559, 653
BssECI CCNNGG 3 cut(s) 614, 1037, 1107
BssMI GATC 6 cut(s) 592, 1113, 1200, 1321, 1443, 1596
BssSI CACGAG 2 cut(s) 266, 915
BssT1I CCWWGG 1 cut(s) 1037
Bst2BI CACGAG 2 cut(s) 266, 915
Bst4CI ACNGT 9 cut(s) 505, 751, 866, 968, 1054, 1170, 1268, 1293, 1393
Bst6I CTCTTC 1 cut(s) 60
BstBI TTCGAA 1 cut(s) 11
BstC8I GCNNGC 3 cut(s) 456, 469, 1407
BstDEI CTNAG 4 cut(s) 1000, 1361, 1449, 1586
BstDSI CCRYGG 1 cut(s) 1037
BstF5I GGATG 2 cut(s) 686, 1251
BstH2I RGCGCY 1 cut(s) 1551
BstHHI GCGC 1 cut(s) 1550
BstKTI GATC 6 cut(s) 595, 1116, 1203, 1324, 1446, 1599
BstMAI GTCTC 3 cut(s) 769, 1382, 1705
BstMBI GATC 6 cut(s) 592, 1113, 1200, 1321, 1443, 1596
BstMWI GCNNNNNNNGC 6 cut(s) 347, 464, 473, 1376, 1402, 1587
BstNSI RCATGY 1 cut(s) 465
BstSCI CCNGG 1 cut(s) 814
BstSFI CTRYAG 4 cut(s) 102, 282, 1325, 1374
BstV2I GAAGAC 3 cut(s) 27, 90, 161
BstX2I RGATCY 2 cut(s) 1200, 1443
BstYI RGATCY 2 cut(s) 1200, 1443
BsuI GTATCC 1 cut(s) 1296
BsuRI GGCC 1 cut(s) 1106
BtgI CCRYGG 1 cut(s) 1037
BtsCI GGATG 2 cut(s) 686, 1251
BtsIMutI CAGTG 2 cut(s) 960, 1398
Cac8I GCNNGC 3 cut(s) 456, 469, 1407
CfoI GCGC 1 cut(s) 1550
Cfr13I GGNCC 4 cut(s) 375, 1104, 1126, 1170
Csp6I GTAC 4 cut(s) 552, 1050, 1277, 1453
CviAII CATG 5 cut(s) 462, 570, 931, 1038, 1174
CviQI GTAC 4 cut(s) 552, 1050, 1277, 1453
DdeI CTNAG 4 cut(s) 1000, 1361, 1449, 1586
DpnI GATC 6 cut(s) 594, 1115, 1202, 1323, 1445, 1598
DpnII GATC 6 cut(s) 592, 1113, 1200, 1321, 1443, 1596
DraI TTTAAA 1 cut(s) 450
DrdI GACNNNNNNGTC 1 cut(s) 94
DseDI GACNNNNNNGTC 1 cut(s) 94
Eam1104I CTCTTC 1 cut(s) 60
EarI CTCTTC 1 cut(s) 60
Ecl136II GAGCTC 1 cut(s) 1590
Eco130I CCWWGG 1 cut(s) 1037
Eco24I GRGCYC 1 cut(s) 1592
Eco31I GGTCTC 1 cut(s) 1705
Eco32I GATATC 1 cut(s) 895
Eco47I GGWCC 3 cut(s) 375, 1126, 1170
Eco47III AGCGCT 1 cut(s) 1549
Eco53kI GAGCTC 1 cut(s) 1590
Eco57I CTGAAG 2 cut(s) 129, 909
Eco88I CYCGRG 2 cut(s) 613, 1108
EcoICRI GAGCTC 1 cut(s) 1590
EcoRI GAATTC 2 cut(s) 7, 33
EcoRV GATATC 1 cut(s) 895
EcoT14I CCWWGG 1 cut(s) 1037
EcoT38I GRGCYC 1 cut(s) 1592
ErhI CCWWGG 1 cut(s) 1037
FaeI CATG 5 cut(s) 465, 573, 934, 1041, 1177
FalI AAGNNNNNCTT 4 cut(s) 39, 71, 1659, 1691
FaqI GGGAC 2 cut(s) 162, 741
FatI CATG 5 cut(s) 461, 569, 930, 1037, 1173
FbaI TGATCA 1 cut(s) 592
FblI GTMKAC 1 cut(s) 1119
FokI GGATG 2 cut(s) 673, 1238
FriOI GRGCYC 1 cut(s) 1592
FspBI CTAG 2 cut(s) 288, 834
GlaI GCGC 1 cut(s) 1549
GsuI CTGGAG 1 cut(s) 576
HaeII RGCGCY 1 cut(s) 1551
HaeIII GGCC 1 cut(s) 1106
HapII CCGG 4 cut(s) 90, 443, 815, 1020
HhaI GCGC 1 cut(s) 1550
Hin1II CATG 5 cut(s) 465, 573, 934, 1041, 1177
Hin6I GCGC 1 cut(s) 1548
HinP1I GCGC 1 cut(s) 1548
HincII GTYRAC 3 cut(s) 423, 1317, 1717
HindII GTYRAC 3 cut(s) 423, 1317, 1717
HindIII AAGCTT 3 cut(s) 171, 633, 875
HpaI GTTAAC 1 cut(s) 1317
HpaII CCGG 4 cut(s) 90, 443, 815, 1020
HphI GGTGA 2 cut(s) 16, 483
Hpy166II GTNNAC 6 cut(s) 76, 423, 1120, 1296, 1317, 1717
Hpy188I TCNGA 4 cut(s) 810, 828, 1003, 1577
Hpy188III TCNNGA 9 cut(s) 38, 710, 739, 980, 1198, 1412, 1523, 1652, 1676
Hpy8I GTNNAC 6 cut(s) 76, 423, 1120, 1296, 1317, 1717
HpyAV CCTTC 1 cut(s) 1756
HpyCH4III ACNGT 9 cut(s) 505, 751, 866, 968, 1054, 1170, 1268, 1293, 1393
HpyCH4IV ACGT 2 cut(s) 42, 294
HpyF10VI GCNNNNNNNGC 6 cut(s) 347, 464, 473, 1376, 1402, 1587
HpyF3I CTNAG 4 cut(s) 1000, 1361, 1449, 1586
HpySE526I ACGT 2 cut(s) 42, 294
Hsp92II CATG 5 cut(s) 465, 573, 934, 1041, 1177
HspAI GCGC 1 cut(s) 1548
Ksp22I TGATCA 1 cut(s) 592
KspAI GTTAAC 1 cut(s) 1317
Kzo9I GATC 6 cut(s) 592, 1113, 1200, 1321, 1443, 1596
LmnI GCTCC 1 cut(s) 338
LweI GCATC 1 cut(s) 1516
MaeI CTAG 2 cut(s) 288, 834
MaeII ACGT 2 cut(s) 42, 294
MaeIII GTNAC 3 cut(s) 290, 968, 1054
MalI GATC 6 cut(s) 594, 1115, 1202, 1323, 1445, 1598
MboI GATC 6 cut(s) 592, 1113, 1200, 1321, 1443, 1596
MflI RGATCY 2 cut(s) 1200, 1443
MhlI GDGCHC 2 cut(s) 1245, 1592
MluCI AATT 5 cut(s) 7, 33, 225, 260, 869
MlyI GAGTC 4 cut(s) 278, 723, 771, 1072
MmeI TCCRAC 2 cut(s) 1056, 1555
MroXI GAANNNNTTC 2 cut(s) 54, 634
MseI TTAA 7 cut(s) 449, 645, 879, 1074, 1316, 1662, 1746
MslI CAYNNNNRTG 3 cut(s) 410, 1460, 1607
MspA1I CMGCKG 3 cut(s) 107, 458, 1373
MspI CCGG 4 cut(s) 90, 443, 815, 1020
MspR9I CCNGG 1 cut(s) 816
MwoI GCNNNNNNNGC 6 cut(s) 347, 464, 473, 1376, 1402, 1587
NciI CCSGG 1 cut(s) 816
NcoI CCATGG 1 cut(s) 1037
NdeII GATC 6 cut(s) 592, 1113, 1200, 1321, 1443, 1596
NlaIII CATG 5 cut(s) 465, 573, 934, 1041, 1177
NlaIV GGNNCC 1 cut(s) 1650
NmeAIII GCCGAG 1 cut(s) 410
NmuCI GTSAC 1 cut(s) 290
NspI RCATGY 1 cut(s) 465
NspV TTCGAA 1 cut(s) 11
OliI CACNNNNGTG 1 cut(s) 1607
PcsI WCGNNNNNNNCGW 1 cut(s) 1224
PdmI GAANNNNTTC 2 cut(s) 54, 634
PfeI GAWTC 7 cut(s) 50, 235, 353, 742, 952, 1010, 1517
PflMI CCANNNNNTGG 1 cut(s) 1038
PleI GAGTC 4 cut(s) 277, 723, 770, 1072
PpsI GAGTC 4 cut(s) 277, 723, 770, 1072
Psp124BI GAGCTC 1 cut(s) 1592
PspN4I GGNNCC 1 cut(s) 1650
PspPI GGNCC 4 cut(s) 375, 1104, 1126, 1170
PstI CTGCAG 3 cut(s) 286, 1329, 1378
PsuI RGATCY 2 cut(s) 1200, 1443
PvuII CAGCTG 2 cut(s) 107, 1373
RsaI GTAC 4 cut(s) 553, 1051, 1278, 1454
RsaNI GTAC 4 cut(s) 552, 1050, 1277, 1453
RseI CAYNNNNRTG 3 cut(s) 410, 1460, 1607
SacI GAGCTC 1 cut(s) 1592
SaqAI TTAA 7 cut(s) 449, 645, 879, 1074, 1316, 1662, 1746
Sau3AI GATC 6 cut(s) 592, 1113, 1200, 1321, 1443, 1596
Sau96I GGNCC 4 cut(s) 375, 1104, 1126, 1170
SchI GAGTC 4 cut(s) 278, 723, 771, 1072
ScrFI CCNGG 1 cut(s) 816
SduI GDGCHC 2 cut(s) 1245, 1592
SfaNI GCATC 1 cut(s) 1516
SfcI CTRYAG 4 cut(s) 102, 282, 1325, 1374
SfuI TTCGAA 1 cut(s) 11
SinI GGWCC 3 cut(s) 375, 1126, 1170
SmiMI CAYNNNNRTG 3 cut(s) 410, 1460, 1607
SmlI CTYRAG 2 cut(s) 1059, 1410
SmoI CTYRAG 2 cut(s) 1059, 1410
Sse9I AATT 5 cut(s) 7, 33, 225, 260, 869
SsiI CCGC 6 cut(s) 458, 479, 515, 794, 1396, 1569
SspMI CTAG 2 cut(s) 288, 834
SstI GAGCTC 1 cut(s) 1592
StyD4I CCNGG 1 cut(s) 814
StyI CCWWGG 1 cut(s) 1037
TaaI ACNGT 9 cut(s) 505, 751, 866, 968, 1054, 1170, 1268, 1293, 1393
TaiI ACGT 2 cut(s) 45, 297
TaqI TCGA 6 cut(s) 11, 146, 1065, 1197, 1227, 1495
TaqII GACCGA 1 cut(s) 1114
TasI AATT 5 cut(s) 7, 33, 225, 260, 869
TatI WGTACW 2 cut(s) 1049, 1452
TauI GCSGC 2 cut(s) 461, 482
TfiI GAWTC 7 cut(s) 50, 235, 353, 742, 952, 1010, 1517
Tru1I TTAA 7 cut(s) 449, 645, 879, 1074, 1316, 1662, 1746
Tru9I TTAA 7 cut(s) 449, 645, 879, 1074, 1316, 1662, 1746
TscAI CASTG 2 cut(s) 967, 1398
TseFI GTSAC 1 cut(s) 290
Tsp45I GTSAC 1 cut(s) 290
TspGWI ACGGA 2 cut(s) 1076, 1178
TspRI CASTG 2 cut(s) 967, 1398
Van91I CCANNNNNTGG 1 cut(s) 1038
VpaK11BI GGWCC 3 cut(s) 375, 1126, 1170
XapI RAATTY 2 cut(s) 7, 33
XceI RCATGY 1 cut(s) 465
XcmI CCANNNNNNNNNTGG 1 cut(s) 754
XmiI GTMKAC 1 cut(s) 1119
XmnI GAANNNNTTC 2 cut(s) 54, 634
XspI CTAG 2 cut(s) 288, 834
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.