FvH4_3g15070

Protein NRT1 PTR FAMILY

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Forward (+)
9323216 .. 9326614
3399 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g15070.t1

Sequence Viewer

Length: 1752 bp
ATGAGTTCTCATGAGGATGAAAGAGCTCTTTTAGAAGATACGCTTTTGCAGAATGATGGCAGCGGACAGAACACTAAAGACGGTTCAGTTGACAGCAAGGGAAAGCCTGCCCTTAAAAATAAAACTGGCCAGTGGAAAGCATGCTCCTTTGTTCTTGGTACCTTTTTCTGTGAAAGATTGGCCTTCTATGGGATTTCTACCAATCTTGTCAATTATCTTCTTGACACACTACATGAAGGAACTGTCGATGCTGCAACAGCTGTTACCAATTGGAAAGGAACTTGCTATCTTACACCTCTCATTGGGGCCATCATAGCTGATACTTATTGGGGAAGATATTGGACAATCGCCAGTTTCACTATCGTCTACTTGATTGGAATGGGTACTTTGACTCTATCGGCATCAGTTCCTGCGCTTGAGCCTGCTGCATGTGTCGATTCTGTATGCCCCAAAGCTACAACTGCACAATATGCTGTATTCATTGCTGGACTATATCTCATTGCATTAGGGACTGGAGGCATCAAACCTTGTATATGGCCTTTTGGGGCGGATCAGTTTGATGATTCCGATCCCCAGGAAAGAGTGAAGAAGGGGTCCTATTTCAACTGGTTCTACTTTTCTCAAAACATCGGCGCTATTATAGCAAGCAGTTTACTGGTGTGGATTCAGGACGATGTTGGGTGGGGAATTGGATTTGGAATCCCTACTGCGGTTATGGGAGTTTGCATTGCAAGTTTATTTTTAGGTACTTCACTGTACCGATTTCAGAAACCAGGCGGCAGTCCTCTTACAAGAATATGCCAGGTTTTGGTTGCATCATTCCATAAAAGAAATCTGAAGGTGACTGATGATAGCCTCCTTTATGAAACACAAGACATTAGCTCTGCCATTGCGGGGAGTCGTAAACTGGAGCACAGCAATGAGCTGAGGTGCCTAGATAAAGCTGCTTTGGTGTCAGATGCTGAGATTGAATGTGGGGACTTCTCAAATCCATGGAGGCTTTGTACTGTTACACAGGTAGAGGAATTGAAGATTTTGATTCGCATGTTTCCAATCTTGGCAACAGGAATTGTGTTTTCTGCCGTTTATGCCCAAATGTCTACATTGTTTGTGGTACAAGGCAAGCTGATGGACAGAGTTGTTGGCTCTGTCACCATTCCTGCAGCATCTCTCTCATTTTTTAATTCTGTAAGTGTTATCATCTGGGTCCCTATCTACGACACGATAATCATTCCAATCGTCAAGAAGTATACAGGCAAGGAGAGGGGTTTCTCACAGTTGGAACGCATGGGAATCGGGCTCTTTGTATCGATTCTATGCATGTCAGCTGCTGCAGTGGTAGAGATTAAGCGATTGCAGCTTGTCAGGGAGCTTGGCTTGGTTGATGAAGAGGTTGCTGTACCGCTTAGCATACTTTGGCAAATTCCACAATATTTTTTGTTAGGCGCTGCTGAGGTTTTCACCTTTGTTGGGCAGCATGAGTTCTTCTATGAGCAAGCGCCGGATGCCATGAGGAGTTTGTGCAGTGCATTGTCTCTTTTGACAAATTCATTGGGGAGTTACCTCAGCTCTCTCATTCTGACAATCGTCACCTCGATCACTACACAGGGAGGGAGTCCAGGATGGATTCCAGACAACTTGAATGAAGGCCATCTTGATTATTTCTACTGGCTTTTGGCTGGACTCAGCCTCCTCAATTTGCTGGTATACATGGTCTTTTCCAGAAGGTACAAGGAGAAGAAAGCTGCTTAA

Protein Analysis

584

Amino Acids

63.99

Weight (kDa)

5.44

Isoelectric Point (pI)

28.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTR2 PF00854 113 - 543 2.5e-120 POT family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 158
AccB1I GGYRCC 2 cut(s) 158, 930
AccB7I CCANNNNNTGG 1 cut(s) 808
AccI GTMKAC 4 cut(s) 366, 1100, 1250, 1707
AciI CCGC 6 cut(s) 63, 548, 710, 777, 893, 1403
AclWI GGATC 2 cut(s) 558, 563
AcoI YGGCCR 1 cut(s) 127
AcsI RAATTY 2 cut(s) 1422, 1546
AcuI CTGAAG 1 cut(s) 857
AfaI GTAC 8 cut(s) 160, 385, 748, 758, 1006, 1116, 1401, 1730
AfiI CCNNNNNNNGG 6 cut(s) 189, 302, 709, 808, 894, 1470
AgsI TTSAA 4 cut(s) 604, 971, 1030, 1642
AjnI CCWGG 4 cut(s) 573, 772, 801, 1618
Alw21I GWGCWC 2 cut(s) 28, 915
Alw26I GTCTC 1 cut(s) 1539
AlwI GGATC 2 cut(s) 558, 563
AlwNI CAGNNNCTG 3 cut(s) 410, 962, 1331
AoxI GGCC 5 cut(s) 127, 180, 306, 536, 1648
ApoI RAATTY 2 cut(s) 1422, 1546
Asp718I GGTACC 1 cut(s) 158
AspLEI GCGC 4 cut(s) 415, 635, 1448, 1501
AspS9I GGNCC 3 cut(s) 306, 594, 1207
AsuHPI GGTGA 4 cut(s) 853, 1144, 1453, 1582
AvaII GGWCC 2 cut(s) 594, 1207
BalI TGGCCA 1 cut(s) 129
BanI GGYRCC 2 cut(s) 158, 930
BanII GRGCYC 2 cut(s) 28, 1302
Bbv12I GWGCWC 2 cut(s) 28, 915
BbvCI CCTCAGC 3 cut(s) 926, 1452, 1565
BccI CCATC 5 cut(s) 50, 317, 1123, 1617, 1659
BceAI ACGGC 1 cut(s) 1067
BcgI CGANNNNNNTGC 2 cut(s) 1276, 1310
BciT130I CCWGG 4 cut(s) 575, 774, 803, 1620
BcoDI GTCTC 1 cut(s) 1539
BfaI CTAG 1 cut(s) 935
BfmI CTRYAG 2 cut(s) 1161, 1332
BfoI RGCGCY 3 cut(s) 636, 1449, 1502
BlpI GCTNAGC 1 cut(s) 1406
Bme1390I CCNGG 4 cut(s) 575, 774, 803, 1620
Bme18I GGWCC 2 cut(s) 594, 1207
BmgT120I GGNCC 3 cut(s) 306, 594, 1207
BmiI GGNNCC 6 cut(s) 160, 307, 595, 932, 1208, 1209
BmrFI CCNGG 4 cut(s) 575, 774, 803, 1620
BmsI GCATC 7 cut(s) 238, 410, 528, 824, 949, 1175, 1495
BoxI GACNNNNGTC 1 cut(s) 1586
BpmI CTGGAG 2 cut(s) 534, 929
Bpu10I CCTNAGC 3 cut(s) 926, 1452, 1565
Bpu1102I GCTNAGC 1 cut(s) 1406
BpuEI CTTGAG 1 cut(s) 437
Bsa29I ATCGAT 1 cut(s) 1310
BsaBI GATNNNNATC 1 cut(s) 567
BsaJI CCNNGG 2 cut(s) 573, 992
BsaXI ACNNNNNCTCC 4 cut(s) 988, 1018, 1674, 1704
Bsc4I CCNNNNNNNGG 6 cut(s) 189, 302, 709, 808, 894, 1470
Bse1I ACTGG 8 cut(s) 130, 130, 351, 517, 611, 660, 912, 1673
Bse3DI GCAATG 5 cut(s) 480, 498, 726, 888, 925
Bse8I GATNNNNATC 1 cut(s) 567
BseBI CCWGG 4 cut(s) 575, 774, 803, 1620
BseCI ATCGAT 1 cut(s) 1310
BseDI CCNNGG 2 cut(s) 573, 992
BseGI GGATG 3 cut(s) 22, 1510, 1628
BseJI GATNNNNATC 1 cut(s) 567
BseLI CCNNNNNNNGG 6 cut(s) 189, 302, 709, 808, 894, 1470
BseMI GCAATG 5 cut(s) 480, 498, 726, 888, 925
BseMII CTCAG 5 cut(s) 917, 954, 1443, 1579, 1699
BseNI ACTGG 8 cut(s) 130, 130, 351, 517, 611, 660, 912, 1673
BseRI GAGGAG 2 cut(s) 1528, 1682
BsgI GTGCAG 2 cut(s) 447, 1543
BshFI GGCC 5 cut(s) 129, 182, 308, 538, 1650
BshNI GGYRCC 2 cut(s) 158, 930
BshVI ATCGAT 1 cut(s) 1310
BsiHKAI GWGCWC 2 cut(s) 28, 915
BsiSI CCGG 1 cut(s) 1502
BslFI GGGAC 3 cut(s) 523, 992, 1193
BslI CCNNNNNNNGG 6 cut(s) 189, 302, 709, 808, 894, 1470
BsmAI GTCTC 1 cut(s) 1539
BsmFI GGGAC 3 cut(s) 523, 992, 1193
BsnI GGCC 5 cut(s) 129, 182, 308, 538, 1650
Bsp1286I GDGCHC 3 cut(s) 28, 915, 1302
Bsp143I GATC 3 cut(s) 550, 568, 1596
Bsp1720I GCTNAGC 1 cut(s) 1406
Bsp19I CCATGG 1 cut(s) 992
BspACI CCGC 6 cut(s) 63, 548, 710, 777, 893, 1403
BspANI GGCC 5 cut(s) 129, 182, 308, 538, 1650
BspCNI CTCAG 5 cut(s) 918, 955, 1444, 1578, 1698
BspDI ATCGAT 1 cut(s) 1310
BspHI TCATGA 1 cut(s) 10
BspLI GGNNCC 6 cut(s) 160, 307, 595, 932, 1208, 1209
BspMAI CTGCAG 2 cut(s) 1165, 1336
BspPI GGATC 2 cut(s) 558, 563
BspT107I GGYRCC 2 cut(s) 158, 930
BsrDI GCAATG 5 cut(s) 480, 498, 726, 888, 925
BsrI ACTGG 8 cut(s) 130, 130, 351, 517, 611, 660, 912, 1673
BssECI CCNNGG 2 cut(s) 573, 992
BssMI GATC 3 cut(s) 550, 568, 1596
BssNAI GTATAC 2 cut(s) 1251, 1708
BssT1I CCWWGG 1 cut(s) 992
Bst1107I GTATAC 2 cut(s) 1251, 1708
Bst2UI CCWGG 4 cut(s) 575, 774, 803, 1620
Bst4CI ACNGT 5 cut(s) 83, 244, 756, 1009, 1278
Bst6I CTCTTC 1 cut(s) 1383
BstAPI GCANNNNNTGC 1 cut(s) 470
BstC8I GCNNGC 6 cut(s) 108, 142, 423, 646, 1124, 1497
BstDEI CTNAG 6 cut(s) 926, 963, 1406, 1452, 1565, 1685
BstDSI CCRYGG 1 cut(s) 992
BstF5I GGATG 3 cut(s) 22, 1510, 1628
BstH2I RGCGCY 3 cut(s) 636, 1449, 1502
BstHHI GCGC 4 cut(s) 415, 635, 1448, 1501
BstKTI GATC 3 cut(s) 553, 571, 1599
BstMAI GTCTC 1 cut(s) 1539
BstMBI GATC 3 cut(s) 550, 568, 1596
BstMWI GCNNNNNNNGC 8 cut(s) 257, 314, 461, 470, 641, 1088, 1357, 1505
BstNI CCWGG 4 cut(s) 575, 774, 803, 1620
BstNSI RCATGY 4 cut(s) 144, 432, 1048, 1324
BstPAI GACNNNNGTC 1 cut(s) 1586
BstSCI CCNGG 4 cut(s) 573, 772, 801, 1618
BstSFI CTRYAG 2 cut(s) 1161, 1332
BstZ17I GTATAC 2 cut(s) 1251, 1708
Bsu15I ATCGAT 1 cut(s) 1310
BsuRI GGCC 5 cut(s) 129, 182, 308, 538, 1650
BsuTUI ATCGAT 1 cut(s) 1310
BtgI CCRYGG 1 cut(s) 992
BtsCI GGATG 3 cut(s) 22, 1510, 1628
BtsI GCAGTG 2 cut(s) 1341, 1531
BtsIMutI CAGTG 4 cut(s) 137, 752, 1341, 1531
Cac8I GCNNGC 6 cut(s) 108, 142, 423, 646, 1124, 1497
CaiI CAGNNNCTG 3 cut(s) 410, 962, 1331
CciI TCATGA 1 cut(s) 10
CfoI GCGC 4 cut(s) 415, 635, 1448, 1501
Cfr13I GGNCC 3 cut(s) 306, 594, 1207
ClaI ATCGAT 1 cut(s) 1310
Csp6I GTAC 8 cut(s) 159, 384, 747, 757, 1005, 1115, 1400, 1729
CviQI GTAC 8 cut(s) 159, 384, 747, 757, 1005, 1115, 1400, 1729
DdeI CTNAG 6 cut(s) 926, 963, 1406, 1452, 1565, 1685
DpnI GATC 3 cut(s) 552, 570, 1598
DpnII GATC 3 cut(s) 550, 568, 1596
EaeI YGGCCR 1 cut(s) 127
Eam1104I CTCTTC 1 cut(s) 1383
EarI CTCTTC 1 cut(s) 1383
EciI GGCGGA 1 cut(s) 563
Ecl136II GAGCTC 1 cut(s) 26
Eco130I CCWWGG 1 cut(s) 992
Eco24I GRGCYC 2 cut(s) 28, 1302
Eco47I GGWCC 2 cut(s) 594, 1207
Eco53kI GAGCTC 1 cut(s) 26
Eco57I CTGAAG 1 cut(s) 857
EcoICRI GAGCTC 1 cut(s) 26
EcoO109I RGGNCCY 2 cut(s) 594, 1207
EcoRII CCWGG 4 cut(s) 573, 772, 801, 1618
EcoT14I CCWWGG 1 cut(s) 992
EcoT22I ATGCAT 1 cut(s) 1322
EcoT38I GRGCYC 2 cut(s) 28, 1302
ErhI CCWWGG 1 cut(s) 992
FalI AAGNNNNNCTT 4 cut(s) 27, 59, 1638, 1670
FaqI GGGAC 3 cut(s) 523, 992, 1193
FauI CCCGC 1 cut(s) 886
FblI GTMKAC 4 cut(s) 366, 1100, 1250, 1707
FokI GGATG 3 cut(s) 29, 1517, 1635
FriOI GRGCYC 2 cut(s) 28, 1302
FspBI CTAG 1 cut(s) 935
GlaI GCGC 4 cut(s) 414, 634, 1447, 1500
GsuI CTGGAG 2 cut(s) 534, 929
HaeII RGCGCY 3 cut(s) 636, 1449, 1502
HaeIII GGCC 5 cut(s) 129, 182, 308, 538, 1650
HapII CCGG 1 cut(s) 1502
HhaI GCGC 4 cut(s) 415, 635, 1448, 1501
Hin6I GCGC 4 cut(s) 413, 633, 1446, 1499
HinP1I GCGC 4 cut(s) 413, 633, 1446, 1499
HincII GTYRAC 1 cut(s) 91
HindII GTYRAC 1 cut(s) 91
HpaII CCGG 1 cut(s) 1502
HphI GGTGA 4 cut(s) 853, 1144, 1453, 1582
Hpy166II GTNNAC 7 cut(s) 91, 367, 653, 905, 1101, 1251, 1708
Hpy188I TCNGA 5 cut(s) 568, 768, 837, 958, 1581
Hpy188III TCNNGA 7 cut(s) 11, 221, 668, 1243, 1631, 1655, 1722
Hpy8I GTNNAC 7 cut(s) 91, 367, 653, 905, 1101, 1251, 1708
HpyAV CCTTC 6 cut(s) 193, 230, 583, 832, 1640, 1719
HpyCH4III ACNGT 5 cut(s) 83, 244, 756, 1009, 1278
HpyF10VI GCNNNNNNNGC 8 cut(s) 257, 314, 461, 470, 641, 1088, 1357, 1505
HpyF3I CTNAG 6 cut(s) 926, 963, 1406, 1452, 1565, 1685
HspAI GCGC 4 cut(s) 413, 633, 1446, 1499
KflI GGGWCCC 1 cut(s) 1207
KpnI GGTACC 1 cut(s) 162
Kzo9I GATC 3 cut(s) 550, 568, 1596
LmnI GCTCC 3 cut(s) 149, 910, 1369
LweI GCATC 7 cut(s) 238, 410, 528, 824, 949, 1175, 1495
MaeI CTAG 1 cut(s) 935
MaeIII GTNAC 6 cut(s) 262, 841, 1009, 1150, 1559, 1588
MalI GATC 3 cut(s) 552, 570, 1598
MboI GATC 3 cut(s) 550, 568, 1596
MboII GAAGA 8 cut(s) 47, 209, 345, 598, 1042, 1400, 1477, 1750
MfeI CAATTG 1 cut(s) 268
MhlI GDGCHC 3 cut(s) 28, 915, 1302
MlsI TGGCCA 1 cut(s) 129
MluCI AATT 9 cut(s) 211, 268, 687, 1025, 1068, 1183, 1422, 1546, 1696
MluNI TGGCCA 1 cut(s) 129
MlyI GAGTC 4 cut(s) 385, 907, 1624, 1677
MmeI TCCRAC 1 cut(s) 1260
Mox20I TGGCCA 1 cut(s) 129
Mph1103I ATGCAT 1 cut(s) 1322
MscI TGGCCA 1 cut(s) 129
MseI TTAA 4 cut(s) 114, 1182, 1347, 1750
MslI CAYNNNNRTG 2 cut(s) 15, 918
Msp20I TGGCCA 1 cut(s) 129
MspA1I CMGCKG 3 cut(s) 63, 260, 1328
MspI CCGG 1 cut(s) 1502
MspR9I CCNGG 4 cut(s) 575, 774, 803, 1620
MunI CAATTG 1 cut(s) 268
MvaI CCWGG 4 cut(s) 575, 774, 803, 1620
MwoI GCNNNNNNNGC 8 cut(s) 257, 314, 461, 470, 641, 1088, 1357, 1505
NcoI CCATGG 1 cut(s) 992
NdeII GATC 3 cut(s) 550, 568, 1596
NlaIV GGNNCC 6 cut(s) 160, 307, 595, 932, 1208, 1209
NmuCI GTSAC 3 cut(s) 841, 1150, 1588
NsiI ATGCAT 1 cut(s) 1322
NspI RCATGY 4 cut(s) 144, 432, 1048, 1324
PaeI GCATGC 1 cut(s) 144
PagI TCATGA 1 cut(s) 10
PfeI GAWTC 8 cut(s) 437, 563, 664, 699, 1039, 1293, 1312, 1627
PflMI CCANNNNNTGG 1 cut(s) 808
PfoI TCCNGGA 1 cut(s) 1618
PleI GAGTC 4 cut(s) 385, 906, 1623, 1677
PpsI GAGTC 4 cut(s) 385, 906, 1623, 1677
PpuMI RGGWCCY 2 cut(s) 594, 1207
PshAI GACNNNNGTC 1 cut(s) 1586
Psp124BI GAGCTC 1 cut(s) 28
Psp5II RGGWCCY 2 cut(s) 594, 1207
Psp6I CCWGG 4 cut(s) 573, 772, 801, 1618
PspGI CCWGG 4 cut(s) 573, 772, 801, 1618
PspN4I GGNNCC 6 cut(s) 160, 307, 595, 932, 1208, 1209
PspPI GGNCC 3 cut(s) 306, 594, 1207
PspPPI RGGWCCY 2 cut(s) 594, 1207
PstI CTGCAG 2 cut(s) 1165, 1336
PstNI CAGNNNCTG 3 cut(s) 410, 962, 1331
PvuII CAGCTG 2 cut(s) 260, 1328
RsaI GTAC 8 cut(s) 160, 385, 748, 758, 1006, 1116, 1401, 1730
RsaNI GTAC 8 cut(s) 159, 384, 747, 757, 1005, 1115, 1400, 1729
RseI CAYNNNNRTG 2 cut(s) 15, 918
SacI GAGCTC 1 cut(s) 28
SaqAI TTAA 4 cut(s) 114, 1182, 1347, 1750
Sau3AI GATC 3 cut(s) 550, 568, 1596
Sau96I GGNCC 3 cut(s) 306, 594, 1207
SchI GAGTC 4 cut(s) 385, 907, 1624, 1677
ScrFI CCNGG 4 cut(s) 575, 774, 803, 1620
SduI GDGCHC 3 cut(s) 28, 915, 1302
SfaNI GCATC 7 cut(s) 238, 410, 528, 824, 949, 1175, 1495
SfcI CTRYAG 2 cut(s) 1161, 1332
SinI GGWCC 2 cut(s) 594, 1207
SmiMI CAYNNNNRTG 2 cut(s) 15, 918
SmlI CTYRAG 1 cut(s) 416
SmoI CTYRAG 1 cut(s) 416
SphI GCATGC 1 cut(s) 144
Sse9I AATT 9 cut(s) 211, 268, 687, 1025, 1068, 1183, 1422, 1546, 1696
SsiI CCGC 6 cut(s) 63, 548, 710, 777, 893, 1403
SspI AATATT 1 cut(s) 1433
SspMI CTAG 1 cut(s) 935
SstI GAGCTC 1 cut(s) 28
StyD4I CCNGG 4 cut(s) 573, 772, 801, 1618
StyI CCWWGG 1 cut(s) 992
TaaI ACNGT 5 cut(s) 83, 244, 756, 1009, 1278
TaqI TCGA 4 cut(s) 246, 435, 1310, 1595
TasI AATT 9 cut(s) 211, 268, 687, 1025, 1068, 1183, 1422, 1546, 1696
TatI WGTACW 1 cut(s) 1004
TauI GCSGC 1 cut(s) 780
TfiI GAWTC 8 cut(s) 437, 563, 664, 699, 1039, 1293, 1312, 1627
Tru1I TTAA 4 cut(s) 114, 1182, 1347, 1750
Tru9I TTAA 4 cut(s) 114, 1182, 1347, 1750
TscAI CASTG 4 cut(s) 137, 759, 1341, 1531
TseFI GTSAC 3 cut(s) 841, 1150, 1588
Tsp45I GTSAC 3 cut(s) 841, 1150, 1588
TspDTI ATGAA 7 cut(s) 33, 249, 469, 879, 1401, 1539, 1659
TspRI CASTG 4 cut(s) 137, 759, 1341, 1531
Van91I CCANNNNNTGG 1 cut(s) 808
VpaK11BI GGWCC 2 cut(s) 594, 1207
XapI RAATTY 2 cut(s) 1422, 1546
XceI RCATGY 4 cut(s) 144, 432, 1048, 1324
XmiI GTMKAC 4 cut(s) 366, 1100, 1250, 1707
XspI CTAG 1 cut(s) 935
Zsp2I ATGCAT 1 cut(s) 1322
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.