Rw4G036350

Protein NRT1 PTR FAMILY

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
Physical Location & Seq
Forward (+)
63186849 .. 63190612
3764 bp
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UTR
Exon/CDS
Intron
Rw4G036350.1

Sequence Viewer

Length: 1377 bp
ATGGTTACACTGACTCTTTCAGCATCAGTTCCTGCACTAGAGCCTGCACCATGTGTCGATTCTGTATGCCCCGAAGCTACTACTGCACAATATGCTATATTCATCACTGGACTATATCTGATTGCATTAGGGACTGGAGGCATCAAACCTTGTATATGGCCTTTTGGGGCGGATCAGTTTGATGATTCCGATCCCAAGGAAAGGGTGAAGAAGGGATCCTATTTCAACTGGTTTTACTTTTCTCAAAACATTGGTGCTATTATAGCAAGCAGTTTACTGGTGTGGATTCAGGACAATGTTGGGTGGGGAATTGGATTTGGAATTCCTACTGCGGTTATGGGAGTTTGCATTGCAAGTTTATTTTTAGGTACTTCTCTGTATCGATTTCAGAAACCAGGCGGAAGTCCTCTTACAAGAATATGCCAGGTTTTAGTTGCATCATTCCATAAAAGAAATCTGAAGGTGCCTGAGGCCAGCAGTCTCCTTTATGAAAAACAAGACATAAGCTCTGCCATTAAAGGGAGTCGTAAACTGGAGCACAGCAATGAACTGAGGTGCCTTGATAAAGCTGCTTTGGTATCTGATGCTGAGATTGAACGTGGGGACTTTTCAAATCCATGGAGGCTTTGTACCGTTACACAAGTAGAGGAACTGAAGATTTTGATCCGCATGTTTCCAATCTGGGCAACAGGAATTGTGTTTTCTGCCGTTTATGCCCAAATGTCTACATTGTTTGTGGTACAAGGCAAGCTGATGGACAGAGTTGTTGGCTCTGTCACCATTCCTGCAGCATCTCTTTCATTTTTCAATTTTGTGAGTGTTATTATCTGGGTCCCTATCTATGATACAATAATCATTCCAATAGTCAAGAAGTATACAGGCAAGGAGAGGGGTTTCTCACAGTTGGAACGTATGGGAATCGGGCTCTTTGTGTCGATTCTATGTATGTCAGCTGCTGCAGTGGTAGAGATTAAGCGATTGCAGCTTGTCAGGGAGCTTGGATTGGTTGATGATGAGGTTGCTGTACCGCTTAGTATACTTTGGCAAATTCCACAATATTTTTTGTTGGGTGCTGCTGAGGTTTTCACCTTCATTGGGCAGCATGAGTTCTTCTATGAGCAAGCGCCGGACGCTATGAGGAGTTTGTGCAGCGCATTGTCTCTTTTGACAAATTCATTGGGGAGTTACCTCAGCTCTCTTATTCTGACAATTGTGACTTCTATCACAACACAGGGTGGGAGTCCGGGATGGATTCCAGACAACTTGAACGAGGGCCATCTTGATTATTTCTACTGGCTTTTGGCTGGACTCAGCCTCCTAAATTTGTTGGTGTACATGGTCTTTTCCAGAAGGTATAAGGAGAAGAAGGTTGCTTAA

Protein Analysis

458

Amino Acids

50.61

Weight (kDa)

6.46

Isoelectric Point (pI)

30.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTR2 PF00854 1 - 418 2e-116 POT family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 463, 555
AccI GTMKAC 3 cut(s) 725, 875, 1036
AciI CCGC 5 cut(s) 170, 332, 399, 667, 1028
AclWI GGATC 5 cut(s) 180, 185, 210, 223, 658
AcsI RAATTY 4 cut(s) 321, 1047, 1171, 1321
AcuI CTGAAG 2 cut(s) 479, 674
AdeI CACNNNGTG 2 cut(s) 53, 1235
AfaI GTAC 5 cut(s) 370, 631, 741, 1026, 1334
AfiI CCNNNNNNNGG 3 cut(s) 201, 519, 1095
AgsI TTSAA 5 cut(s) 226, 596, 612, 808, 1267
AjnI CCWGG 2 cut(s) 394, 423
AluBI AGCT 8 cut(s) 77, 507, 569, 751, 953, 985, 997, 1194
AluI AGCT 8 cut(s) 77, 507, 569, 751, 953, 985, 997, 1194
Alw21I GWGCWC 1 cut(s) 540
Alw26I GTCTC 2 cut(s) 485, 1164
AlwI GGATC 5 cut(s) 180, 185, 210, 223, 658
AlwNI CAGNNNCTG 2 cut(s) 32, 956
AoxI GGCC 3 cut(s) 158, 471, 1273
ApeKI GCWGC 8 cut(s) 569, 788, 953, 956, 982, 1073, 1099, 1149
ApoI RAATTY 4 cut(s) 321, 1047, 1171, 1321
AspLEI GCGC 2 cut(s) 1126, 1154
AspS9I GGNCC 2 cut(s) 832, 1273
AsuC2I CCSGG 1 cut(s) 1245
AsuHPI GGTGA 3 cut(s) 217, 769, 1078
AvaII GGWCC 1 cut(s) 832
AxyI CCTNAGG 1 cut(s) 468
BamHI GGATCC 1 cut(s) 215
BanI GGYRCC 2 cut(s) 463, 555
BanII GRGCYC 1 cut(s) 927
BarI GAAGNNNNNNTAC 2 cut(s) 394, 426
Bbv12I GWGCWC 1 cut(s) 540
BbvCI CCTCAGC 2 cut(s) 1077, 1190
BbvI GCAGC 8 cut(s) 556, 800, 940, 943, 994, 1060, 1111, 1161
BccI CCATC 3 cut(s) 748, 1242, 1284
BceAI ACGGC 1 cut(s) 692
BciT130I CCWGG 2 cut(s) 396, 425
BcnI CCSGG 1 cut(s) 1245
BcoDI GTCTC 2 cut(s) 485, 1164
BfaI CTAG 1 cut(s) 38
BfmI CTRYAG 2 cut(s) 786, 957
BfoI RGCGCY 1 cut(s) 1127
BisI GCNGC 8 cut(s) 570, 789, 954, 957, 983, 1074, 1100, 1150
BlsI GCNGC 8 cut(s) 571, 790, 955, 958, 984, 1075, 1101, 1151
Bme1390I CCNGG 3 cut(s) 396, 425, 1245
Bme18I GGWCC 1 cut(s) 832
BmgT120I GGNCC 2 cut(s) 832, 1273
BmiI GGNNCC 5 cut(s) 217, 465, 557, 833, 834
BmrFI CCNGG 3 cut(s) 396, 425, 1245
BmsI GCATC 5 cut(s) 32, 150, 446, 574, 800
BpmI CTGGAG 2 cut(s) 156, 554
Bpu10I CCTNAGC 2 cut(s) 1077, 1190
BpuMI CCSGG 1 cut(s) 1245
Bsa29I ATCGAT 1 cut(s) 382
BsaBI GATNNNNATC 2 cut(s) 189, 662
BsaJI CCNNGG 2 cut(s) 195, 617
BsaXI ACNNNNNCTCC 4 cut(s) 613, 643, 1299, 1329
Bsc4I CCNNNNNNNGG 3 cut(s) 201, 519, 1095
Bse1I ACTGG 6 cut(s) 112, 139, 233, 282, 537, 1298
Bse21I CCTNAGG 1 cut(s) 468
Bse3DI GCAATG 2 cut(s) 348, 550
Bse8I GATNNNNATC 2 cut(s) 189, 662
BseBI CCWGG 2 cut(s) 396, 425
BseCI ATCGAT 1 cut(s) 382
BseDI CCNNGG 2 cut(s) 195, 617
BseGI GGATG 1 cut(s) 1253
BseJI GATNNNNATC 2 cut(s) 189, 662
BseLI CCNNNNNNNGG 3 cut(s) 201, 519, 1095
BseMI GCAATG 2 cut(s) 348, 550
BseMII CTCAG 6 cut(s) 459, 542, 579, 1068, 1204, 1324
BseNI ACTGG 6 cut(s) 112, 139, 233, 282, 537, 1298
BseRI GAGGAG 1 cut(s) 1153
BseXI GCAGC 8 cut(s) 556, 800, 940, 943, 994, 1060, 1111, 1161
BsgI GTGCAG 4 cut(s) 18, 30, 69, 1168
BshFI GGCC 3 cut(s) 160, 473, 1275
BshNI GGYRCC 2 cut(s) 463, 555
BshVI ATCGAT 1 cut(s) 382
BsiHKAI GWGCWC 1 cut(s) 540
BsiSI CCGG 2 cut(s) 1127, 1244
BslFI GGGAC 3 cut(s) 145, 617, 818
BslI CCNNNNNNNGG 3 cut(s) 201, 519, 1095
BsmAI GTCTC 2 cut(s) 485, 1164
BsmFI GGGAC 3 cut(s) 145, 617, 818
BsnI GGCC 3 cut(s) 160, 473, 1275
Bsp1286I GDGCHC 2 cut(s) 540, 927
Bsp1407I TGTACA 1 cut(s) 1332
Bsp143I GATC 4 cut(s) 172, 190, 215, 663
Bsp19I CCATGG 1 cut(s) 617
BspACI CCGC 5 cut(s) 170, 332, 399, 667, 1028
BspANI GGCC 3 cut(s) 160, 473, 1275
BspCNI CTCAG 6 cut(s) 460, 543, 580, 1069, 1203, 1323
BspDI ATCGAT 1 cut(s) 382
BspLI GGNNCC 5 cut(s) 217, 465, 557, 833, 834
BspMAI CTGCAG 2 cut(s) 790, 961
BspPI GGATC 5 cut(s) 180, 185, 210, 223, 658
BspT107I GGYRCC 2 cut(s) 463, 555
BsrDI GCAATG 2 cut(s) 348, 550
BsrGI TGTACA 1 cut(s) 1332
BsrI ACTGG 6 cut(s) 112, 139, 233, 282, 537, 1298
BssECI CCNNGG 2 cut(s) 195, 617
BssMI GATC 4 cut(s) 172, 190, 215, 663
BssNAI GTATAC 2 cut(s) 876, 1037
BssT1I CCWWGG 2 cut(s) 195, 617
Bst1107I GTATAC 2 cut(s) 876, 1037
Bst2UI CCWGG 2 cut(s) 396, 425
Bst4CI ACNGT 2 cut(s) 634, 903
BstAPI GCANNNNNTGC 1 cut(s) 92
BstAUI TGTACA 1 cut(s) 1332
BstC8I GCNNGC 5 cut(s) 45, 268, 475, 749, 1122
BstDEI CTNAG 7 cut(s) 468, 551, 588, 1031, 1077, 1190, 1310
BstDSI CCRYGG 1 cut(s) 617
BstF5I GGATG 1 cut(s) 1253
BstH2I RGCGCY 1 cut(s) 1127
BstHHI GCGC 2 cut(s) 1126, 1154
BstKTI GATC 4 cut(s) 175, 193, 218, 666
BstMAI GTCTC 2 cut(s) 485, 1164
BstMBI GATC 4 cut(s) 172, 190, 215, 663
BstMWI GCNNNNNNNGC 6 cut(s) 83, 92, 263, 713, 982, 1130
BstNI CCWGG 2 cut(s) 396, 425
BstNSI RCATGY 1 cut(s) 673
BstSCI CCNGG 3 cut(s) 394, 423, 1243
BstSFI CTRYAG 2 cut(s) 786, 957
BstV1I GCAGC 8 cut(s) 556, 800, 940, 943, 994, 1060, 1111, 1161
BstX2I RGATCY 1 cut(s) 215
BstYI RGATCY 1 cut(s) 215
BstZ17I GTATAC 2 cut(s) 876, 1037
Bsu15I ATCGAT 1 cut(s) 382
Bsu36I CCTNAGG 1 cut(s) 468
BsuRI GGCC 3 cut(s) 160, 473, 1275
BsuTUI ATCGAT 1 cut(s) 382
BtgI CCRYGG 1 cut(s) 617
BtsCI GGATG 1 cut(s) 1253
BtsI GCAGTG 1 cut(s) 966
BtsIMutI CAGTG 3 cut(s) 8, 105, 966
Cac8I GCNNGC 5 cut(s) 45, 268, 475, 749, 1122
CaiI CAGNNNCTG 2 cut(s) 32, 956
CfoI GCGC 2 cut(s) 1126, 1154
Cfr13I GGNCC 2 cut(s) 832, 1273
ClaI ATCGAT 1 cut(s) 382
CseI GACGC 1 cut(s) 1139
Csp6I GTAC 5 cut(s) 369, 630, 740, 1025, 1333
CviAII CATG 5 cut(s) 51, 618, 670, 1103, 1336
CviQI GTAC 5 cut(s) 369, 630, 740, 1025, 1333
DdeI CTNAG 7 cut(s) 468, 551, 588, 1031, 1077, 1190, 1310
DpnI GATC 4 cut(s) 174, 192, 217, 665
DpnII GATC 4 cut(s) 172, 190, 215, 663
DraIII CACNNNGTG 2 cut(s) 53, 1235
EciI GGCGGA 2 cut(s) 185, 414
Eco130I CCWWGG 2 cut(s) 195, 617
Eco24I GRGCYC 1 cut(s) 927
Eco47I GGWCC 1 cut(s) 832
Eco57I CTGAAG 2 cut(s) 479, 674
Eco81I CCTNAGG 1 cut(s) 468
EcoO109I RGGNCCY 1 cut(s) 832
EcoRI GAATTC 1 cut(s) 321
EcoRII CCWGG 2 cut(s) 394, 423
EcoT14I CCWWGG 2 cut(s) 195, 617
EcoT38I GRGCYC 1 cut(s) 927
ErhI CCWWGG 2 cut(s) 195, 617
FaeI CATG 5 cut(s) 54, 621, 673, 1106, 1339
FaqI GGGAC 3 cut(s) 145, 617, 818
FatI CATG 5 cut(s) 50, 617, 669, 1102, 1335
FblI GTMKAC 3 cut(s) 725, 875, 1036
Fnu4HI GCNGC 8 cut(s) 570, 789, 954, 957, 983, 1074, 1100, 1150
FokI GGATG 1 cut(s) 1260
FriOI GRGCYC 1 cut(s) 927
Fsp4HI GCNGC 8 cut(s) 570, 789, 954, 957, 983, 1074, 1100, 1150
FspBI CTAG 1 cut(s) 38
GlaI GCGC 2 cut(s) 1125, 1153
GluI GCNGC 8 cut(s) 570, 789, 954, 957, 983, 1074, 1100, 1150
GsuI CTGGAG 2 cut(s) 156, 554
HaeII RGCGCY 1 cut(s) 1127
HaeIII GGCC 3 cut(s) 160, 473, 1275
HapII CCGG 2 cut(s) 1127, 1244
HgaI GACGC 1 cut(s) 1139
HhaI GCGC 2 cut(s) 1126, 1154
Hin1II CATG 5 cut(s) 54, 621, 673, 1106, 1339
Hin6I GCGC 2 cut(s) 1124, 1152
HinP1I GCGC 2 cut(s) 1124, 1152
HpaII CCGG 2 cut(s) 1127, 1244
HphI GGTGA 3 cut(s) 217, 769, 1078
Hpy166II GTNNAC 6 cut(s) 275, 530, 726, 876, 1037, 1333
Hpy188I TCNGA 6 cut(s) 120, 190, 390, 459, 583, 1206
Hpy188III TCNNGA 5 cut(s) 290, 868, 1256, 1280, 1347
Hpy8I GTNNAC 6 cut(s) 275, 530, 726, 876, 1037, 1333
HpyAV CCTTC 5 cut(s) 205, 454, 1099, 1344, 1360
HpyCH4III ACNGT 2 cut(s) 634, 903
HpyCH4IV ACGT 2 cut(s) 598, 910
HpyF10VI GCNNNNNNNGC 6 cut(s) 83, 92, 263, 713, 982, 1130
HpyF3I CTNAG 7 cut(s) 468, 551, 588, 1031, 1077, 1190, 1310
HpySE526I ACGT 2 cut(s) 598, 910
Hsp92II CATG 5 cut(s) 54, 621, 673, 1106, 1339
HspAI GCGC 2 cut(s) 1124, 1152
KflI GGGWCCC 1 cut(s) 832
Kzo9I GATC 4 cut(s) 172, 190, 215, 663
LmnI GCTCC 2 cut(s) 535, 994
Lsp1109I GCAGC 8 cut(s) 556, 800, 940, 943, 994, 1060, 1111, 1161
LweI GCATC 5 cut(s) 32, 150, 446, 574, 800
MaeI CTAG 1 cut(s) 38
MaeII ACGT 2 cut(s) 598, 910
MaeIII GTNAC 5 cut(s) 4, 634, 775, 1184, 1213
MalI GATC 4 cut(s) 174, 192, 217, 665
MboI GATC 4 cut(s) 172, 190, 215, 663
MboII GAAGA 4 cut(s) 220, 667, 1102, 1375
MfeI CAATTG 1 cut(s) 1209
MflI RGATCY 1 cut(s) 215
MhlI GDGCHC 2 cut(s) 540, 927
MluCI AATT 8 cut(s) 309, 321, 693, 808, 1047, 1171, 1209, 1321
MlyI GAGTC 4 cut(s) 7, 532, 1249, 1302
MmeI TCCRAC 1 cut(s) 885
MseI TTAA 3 cut(s) 516, 972, 1375
MslI CAYNNNNRTG 1 cut(s) 543
MspA1I CMGCKG 1 cut(s) 953
MspI CCGG 2 cut(s) 1127, 1244
MspR9I CCNGG 3 cut(s) 396, 425, 1245
MunI CAATTG 1 cut(s) 1209
MvaI CCWGG 2 cut(s) 396, 425
MwoI GCNNNNNNNGC 6 cut(s) 83, 92, 263, 713, 982, 1130
NciI CCSGG 1 cut(s) 1245
NcoI CCATGG 1 cut(s) 617
NdeII GATC 4 cut(s) 172, 190, 215, 663
NlaIII CATG 5 cut(s) 54, 621, 673, 1106, 1339
NlaIV GGNNCC 5 cut(s) 217, 465, 557, 833, 834
NmuCI GTSAC 2 cut(s) 775, 1213
NspI RCATGY 1 cut(s) 673
PfeI GAWTC 6 cut(s) 59, 185, 286, 918, 937, 1252
PfoI TCCNGGA 1 cut(s) 1243
PkrI GCNGC 8 cut(s) 571, 790, 955, 958, 984, 1075, 1101, 1151
PleI GAGTC 4 cut(s) 7, 531, 1248, 1302
PpsI GAGTC 4 cut(s) 7, 531, 1248, 1302
PpuMI RGGWCCY 1 cut(s) 832
Psp5II RGGWCCY 1 cut(s) 832
Psp6I CCWGG 2 cut(s) 394, 423
PspGI CCWGG 2 cut(s) 394, 423
PspN4I GGNNCC 5 cut(s) 217, 465, 557, 833, 834
PspPI GGNCC 2 cut(s) 832, 1273
PspPPI RGGWCCY 1 cut(s) 832
PstI CTGCAG 2 cut(s) 790, 961
PstNI CAGNNNCTG 2 cut(s) 32, 956
PsuI RGATCY 1 cut(s) 215
PvuII CAGCTG 1 cut(s) 953
RsaI GTAC 5 cut(s) 370, 631, 741, 1026, 1334
RsaNI GTAC 5 cut(s) 369, 630, 740, 1025, 1333
RseI CAYNNNNRTG 1 cut(s) 543
SaqAI TTAA 3 cut(s) 516, 972, 1375
SatI GCNGC 8 cut(s) 570, 789, 954, 957, 983, 1074, 1100, 1150
Sau3AI GATC 4 cut(s) 172, 190, 215, 663
Sau96I GGNCC 2 cut(s) 832, 1273
SchI GAGTC 4 cut(s) 7, 532, 1249, 1302
ScrFI CCNGG 3 cut(s) 396, 425, 1245
SduI GDGCHC 2 cut(s) 540, 927
SfaNI GCATC 5 cut(s) 32, 150, 446, 574, 800
SfcI CTRYAG 2 cut(s) 786, 957
SinI GGWCC 1 cut(s) 832
SmiMI CAYNNNNRTG 1 cut(s) 543
Sse9I AATT 8 cut(s) 309, 321, 693, 808, 1047, 1171, 1209, 1321
SsiI CCGC 5 cut(s) 170, 332, 399, 667, 1028
SspI AATATT 1 cut(s) 1058
SspMI CTAG 1 cut(s) 38
StyD4I CCNGG 3 cut(s) 394, 423, 1243
StyI CCWWGG 2 cut(s) 195, 617
TaaI ACNGT 2 cut(s) 634, 903
TaiI ACGT 2 cut(s) 601, 913
TaqI TCGA 3 cut(s) 57, 382, 935
TasI AATT 8 cut(s) 309, 321, 693, 808, 1047, 1171, 1209, 1321
TatI WGTACW 1 cut(s) 1332
TfiI GAWTC 6 cut(s) 59, 185, 286, 918, 937, 1252
Tru1I TTAA 3 cut(s) 516, 972, 1375
Tru9I TTAA 3 cut(s) 516, 972, 1375
TscAI CASTG 3 cut(s) 15, 112, 966
TseFI GTSAC 2 cut(s) 775, 1213
TseI GCWGC 8 cut(s) 569, 788, 953, 956, 982, 1073, 1099, 1149
Tsp45I GTSAC 2 cut(s) 775, 1213
TspDTI ATGAA 6 cut(s) 91, 504, 561, 789, 1081, 1164
TspRI CASTG 3 cut(s) 15, 112, 966
VpaK11BI GGWCC 1 cut(s) 832
XapI RAATTY 4 cut(s) 321, 1047, 1171, 1321
XceI RCATGY 1 cut(s) 673
XmiI GTMKAC 3 cut(s) 725, 875, 1036
XspI CTAG 1 cut(s) 38
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.