Rroxscaffold_5G00386050

Protein NRT1 PTR FAMILY

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Forward (+)
65020486 .. 65021957
1472 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00386050.1

Sequence Viewer

Length: 1317 bp
ATGGTTACACTGACTCTTTCAGCATCAGTTCCTGCATTAGAGCCTGCAGCATGTGTCGATTTTGTATGCCCCGAAGCTACTACTGCACAATATGCTGTATTCATCACTGGACTATATCTGATTGCATTAGGGACTGGAGGCATCAAACCTTGTATATGGCCTTTTGGGGCGGATCAGTTTGATGATTCCGATCCCCAGGAAAGGCAAGCAGTTTACTGGTGTGGATTCAGGACAATGTTGGGTGGGGAATTTGGATTTGGAATTCCTACTGCGGTTATGGGAGTTTGCATTGCAAGTTTATTTTTAGGTACTTCTTTGTATCGATTTCAGAAACCAGGCGGAAGTCCTCTTACAAGAATATGCCAGGTTTTAGTTGCATCATTCCATAAAAGAAATCTGAAGGTGCCTGAGGACAGCAGTCTCCTTTATGAAACACAAGACATAAGCTCTGCCATTAAAGGGAGTCGTAAACTGGAGCATAGTAATGAACTGAGGTGCCTTGATAAAGCTGCTTTGGTATCTGATGCTGAGATTGAACGTGGGGACTTTTCAAATCCATGGAGGCTTTGTACCATTACACAAGTAGAGGAACTGAAGATTTTGATCCGCATGTTTCCAATCTGGGCAACAGGAATTGTGTTTTCTGCCGTTTATGCCCAAATGTCTACATTGTTTGTGGTACAAGGAAAGCTGATGGACAGAATTGTTGGCTCTGTCACCATTCCTGCAGCATCTCTTTCATTTTTCAATTTTGTGAGTGTTATTATCTGGGTCCCTATCTATGATACAATAATTATTCCATTAGTCAAGAAGTATACAGGCAAGGAGAGGGGTTTCTCACAGTTGGAACGTATGGGAATCGGGCTCTTTGTGTCGATTCTATGTATGTCAGCTGCTGCAGTGGTAGAGATTAAGCGATTGCAGCTTGTCAGGGAGCTTGGATTGGTTGATGGTGAGGTTGCTGTACCGCTTAGTATACTCTGGCAAATTCCACAATATTTTTTGTTGGGTGCTGCTGAGGTTTTCACCTTCATTGGGCAGCATGAGTTCTTCTATGAGCAGGCGCCGGACGCTATGAGGAGTTTGTGCAGTGCATTGTCTCTTTTGACGAATTCATTGGGGAGTTACCTCAGCTCTCTTATTCTGACAATTGTGACTTCTATCACAACACAGGGTGGGAGTCCGGGATGGATTCCAGACAACTTGAACGAGGGCCATCTTGATTATTTCTACTGGCTTTTGGCTGGACTCAGCCTCCTAAATTTGTTGGTGTACATGGTCTTTTCCAGAAGGTATAAGGAGAAGAAGGTTGCTTAA

Protein Analysis

438

Amino Acids

48.35

Weight (kDa)

5.72

Isoelectric Point (pI)

31.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTR2 PF00854 1 - 398 2.6e-94 POT family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 403, 495, 1063
AccI GTMKAC 3 cut(s) 665, 815, 976
AciI CCGC 5 cut(s) 170, 272, 339, 607, 968
AclWI GGATC 3 cut(s) 180, 185, 598
AcsI RAATTY 5 cut(s) 248, 261, 987, 1111, 1261
AcuI CTGAAG 2 cut(s) 419, 614
AcyI GRCGYC 1 cut(s) 1064
AdeI CACNNNGTG 1 cut(s) 1175
AfaI GTAC 5 cut(s) 310, 571, 681, 966, 1274
AfiI CCNNNNNNNGG 3 cut(s) 201, 459, 1035
AgsI TTSAA 4 cut(s) 536, 552, 748, 1207
AjnI CCWGG 3 cut(s) 195, 334, 363
AjuI GAANNNNNNNTTGG 2 cut(s) 240, 272
AluBI AGCT 8 cut(s) 77, 447, 509, 691, 893, 925, 937, 1134
AluI AGCT 8 cut(s) 77, 447, 509, 691, 893, 925, 937, 1134
Alw26I GTCTC 2 cut(s) 425, 1104
AlwI GGATC 3 cut(s) 180, 185, 598
AlwNI CAGNNNCTG 2 cut(s) 32, 896
AoxI GGCC 2 cut(s) 158, 1213
ApeKI GCWGC 8 cut(s) 47, 509, 728, 893, 896, 922, 1013, 1039
ApoI RAATTY 5 cut(s) 248, 261, 987, 1111, 1261
AspLEI GCGC 1 cut(s) 1066
AspS9I GGNCC 2 cut(s) 772, 1213
AsuC2I CCSGG 1 cut(s) 1185
AsuHPI GGTGA 3 cut(s) 709, 965, 1018
AvaII GGWCC 1 cut(s) 772
AxyI CCTNAGG 1 cut(s) 408
BanI GGYRCC 3 cut(s) 403, 495, 1063
BanII GRGCYC 1 cut(s) 867
BarI GAAGNNNNNNTAC 2 cut(s) 334, 366
BbvCI CCTCAGC 2 cut(s) 1017, 1130
BbvI GCAGC 8 cut(s) 59, 496, 740, 880, 883, 934, 1000, 1051
BccI CCATC 4 cut(s) 688, 944, 1182, 1224
BceAI ACGGC 1 cut(s) 632
BciT130I CCWGG 3 cut(s) 197, 336, 365
BcnI CCSGG 1 cut(s) 1185
BcoDI GTCTC 2 cut(s) 425, 1104
BfmI CTRYAG 3 cut(s) 45, 726, 897
BfoI RGCGCY 1 cut(s) 1067
BisI GCNGC 8 cut(s) 48, 510, 729, 894, 897, 923, 1014, 1040
BlsI GCNGC 8 cut(s) 49, 511, 730, 895, 898, 924, 1015, 1041
Bme1390I CCNGG 4 cut(s) 197, 336, 365, 1185
Bme18I GGWCC 1 cut(s) 772
BmgT120I GGNCC 2 cut(s) 772, 1213
BmiI GGNNCC 5 cut(s) 405, 497, 773, 774, 1065
BmrFI CCNGG 4 cut(s) 197, 336, 365, 1185
BmsI GCATC 5 cut(s) 32, 150, 386, 514, 740
BoxI GACNNNNGTC 1 cut(s) 417
BpmI CTGGAG 2 cut(s) 156, 494
Bpu10I CCTNAGC 2 cut(s) 1017, 1130
BpuMI CCSGG 1 cut(s) 1185
Bsa29I ATCGAT 1 cut(s) 322
BsaBI GATNNNNATC 2 cut(s) 189, 602
BsaHI GRCGYC 1 cut(s) 1064
BsaJI CCNNGG 2 cut(s) 195, 557
BsaXI ACNNNNNCTCC 4 cut(s) 553, 583, 1239, 1269
Bsc4I CCNNNNNNNGG 3 cut(s) 201, 459, 1035
Bse1I ACTGG 5 cut(s) 112, 139, 221, 477, 1238
Bse21I CCTNAGG 1 cut(s) 408
Bse3DI GCAATG 1 cut(s) 288
Bse8I GATNNNNATC 2 cut(s) 189, 602
BseBI CCWGG 3 cut(s) 197, 336, 365
BseCI ATCGAT 1 cut(s) 322
BseDI CCNNGG 2 cut(s) 195, 557
BseGI GGATG 1 cut(s) 1193
BseJI GATNNNNATC 2 cut(s) 189, 602
BseLI CCNNNNNNNGG 3 cut(s) 201, 459, 1035
BseMI GCAATG 1 cut(s) 288
BseMII CTCAG 6 cut(s) 399, 482, 519, 1008, 1144, 1264
BseNI ACTGG 5 cut(s) 112, 139, 221, 477, 1238
BseRI GAGGAG 1 cut(s) 1093
BseXI GCAGC 8 cut(s) 59, 496, 740, 880, 883, 934, 1000, 1051
BsgI GTGCAG 2 cut(s) 69, 1108
BshFI GGCC 2 cut(s) 160, 1215
BshNI GGYRCC 3 cut(s) 403, 495, 1063
BshVI ATCGAT 1 cut(s) 322
BsiSI CCGG 2 cut(s) 1067, 1184
BslFI GGGAC 3 cut(s) 145, 557, 758
BslI CCNNNNNNNGG 3 cut(s) 201, 459, 1035
BsmAI GTCTC 2 cut(s) 425, 1104
BsmFI GGGAC 3 cut(s) 145, 557, 758
BsnI GGCC 2 cut(s) 160, 1215
Bsp1286I GDGCHC 1 cut(s) 867
Bsp1407I TGTACA 1 cut(s) 1272
Bsp143I GATC 3 cut(s) 172, 190, 603
Bsp19I CCATGG 1 cut(s) 557
BspACI CCGC 5 cut(s) 170, 272, 339, 607, 968
BspANI GGCC 2 cut(s) 160, 1215
BspCNI CTCAG 6 cut(s) 400, 483, 520, 1009, 1143, 1263
BspDI ATCGAT 1 cut(s) 322
BspLI GGNNCC 5 cut(s) 405, 497, 773, 774, 1065
BspMAI CTGCAG 3 cut(s) 49, 730, 901
BspPI GGATC 3 cut(s) 180, 185, 598
BspT107I GGYRCC 3 cut(s) 403, 495, 1063
BsrDI GCAATG 1 cut(s) 288
BsrGI TGTACA 1 cut(s) 1272
BsrI ACTGG 5 cut(s) 112, 139, 221, 477, 1238
BssECI CCNNGG 2 cut(s) 195, 557
BssMI GATC 3 cut(s) 172, 190, 603
BssNAI GTATAC 2 cut(s) 816, 977
BssNI GRCGYC 1 cut(s) 1064
BssT1I CCWWGG 1 cut(s) 557
Bst1107I GTATAC 2 cut(s) 816, 977
Bst2UI CCWGG 3 cut(s) 197, 336, 365
Bst4CI ACNGT 1 cut(s) 843
BstACI GRCGYC 1 cut(s) 1064
BstAPI GCANNNNNTGC 1 cut(s) 92
BstAUI TGTACA 1 cut(s) 1272
BstC8I GCNNGC 3 cut(s) 45, 207, 1062
BstDEI CTNAG 7 cut(s) 408, 491, 528, 971, 1017, 1130, 1250
BstDSI CCRYGG 1 cut(s) 557
BstF5I GGATG 1 cut(s) 1193
BstH2I RGCGCY 1 cut(s) 1067
BstHHI GCGC 1 cut(s) 1066
BstKTI GATC 3 cut(s) 175, 193, 606
BstMAI GTCTC 2 cut(s) 425, 1104
BstMBI GATC 3 cut(s) 172, 190, 603
BstMWI GCNNNNNNNGC 5 cut(s) 83, 92, 653, 922, 1070
BstNI CCWGG 3 cut(s) 197, 336, 365
BstNSI RCATGY 2 cut(s) 54, 613
BstPAI GACNNNNGTC 1 cut(s) 417
BstSCI CCNGG 4 cut(s) 195, 334, 363, 1183
BstSFI CTRYAG 3 cut(s) 45, 726, 897
BstV1I GCAGC 8 cut(s) 59, 496, 740, 880, 883, 934, 1000, 1051
BstZ17I GTATAC 2 cut(s) 816, 977
Bsu15I ATCGAT 1 cut(s) 322
Bsu36I CCTNAGG 1 cut(s) 408
BsuRI GGCC 2 cut(s) 160, 1215
BsuTUI ATCGAT 1 cut(s) 322
BtgI CCRYGG 1 cut(s) 557
BtsCI GGATG 1 cut(s) 1193
BtsI GCAGTG 2 cut(s) 906, 1096
BtsIMutI CAGTG 4 cut(s) 8, 105, 906, 1096
Cac8I GCNNGC 3 cut(s) 45, 207, 1062
CaiI CAGNNNCTG 2 cut(s) 32, 896
CfoI GCGC 1 cut(s) 1066
Cfr13I GGNCC 2 cut(s) 772, 1213
ClaI ATCGAT 1 cut(s) 322
CseI GACGC 1 cut(s) 1079
Csp6I GTAC 5 cut(s) 309, 570, 680, 965, 1273
CviAII CATG 5 cut(s) 51, 558, 610, 1043, 1276
CviQI GTAC 5 cut(s) 309, 570, 680, 965, 1273
DdeI CTNAG 7 cut(s) 408, 491, 528, 971, 1017, 1130, 1250
DinI GGCGCC 1 cut(s) 1065
DpnI GATC 3 cut(s) 174, 192, 605
DpnII GATC 3 cut(s) 172, 190, 603
DraIII CACNNNGTG 1 cut(s) 1175
EciI GGCGGA 2 cut(s) 185, 354
Eco130I CCWWGG 1 cut(s) 557
Eco24I GRGCYC 1 cut(s) 867
Eco47I GGWCC 1 cut(s) 772
Eco57I CTGAAG 2 cut(s) 419, 614
Eco81I CCTNAGG 1 cut(s) 408
EcoO109I RGGNCCY 1 cut(s) 772
EcoRI GAATTC 2 cut(s) 261, 1111
EcoRII CCWGG 3 cut(s) 195, 334, 363
EcoT14I CCWWGG 1 cut(s) 557
EcoT38I GRGCYC 1 cut(s) 867
EgeI GGCGCC 1 cut(s) 1065
EheI GGCGCC 1 cut(s) 1065
ErhI CCWWGG 1 cut(s) 557
FaeI CATG 5 cut(s) 54, 561, 613, 1046, 1279
FaqI GGGAC 3 cut(s) 145, 557, 758
FatI CATG 5 cut(s) 50, 557, 609, 1042, 1275
FblI GTMKAC 3 cut(s) 665, 815, 976
Fnu4HI GCNGC 8 cut(s) 48, 510, 729, 894, 897, 923, 1014, 1040
FokI GGATG 1 cut(s) 1200
FriOI GRGCYC 1 cut(s) 867
Fsp4HI GCNGC 8 cut(s) 48, 510, 729, 894, 897, 923, 1014, 1040
GlaI GCGC 1 cut(s) 1065
GluI GCNGC 8 cut(s) 48, 510, 729, 894, 897, 923, 1014, 1040
GsuI CTGGAG 2 cut(s) 156, 494
HaeII RGCGCY 1 cut(s) 1067
HaeIII GGCC 2 cut(s) 160, 1215
HapII CCGG 2 cut(s) 1067, 1184
HgaI GACGC 1 cut(s) 1079
HhaI GCGC 1 cut(s) 1066
Hin1I GRCGYC 1 cut(s) 1064
Hin1II CATG 5 cut(s) 54, 561, 613, 1046, 1279
Hin6I GCGC 1 cut(s) 1064
HinP1I GCGC 1 cut(s) 1064
HinfI GANTC 9 cut(s) 13, 185, 225, 463, 858, 877, 1180, 1192, 1248
HpaII CCGG 2 cut(s) 1067, 1184
HphI GGTGA 3 cut(s) 709, 965, 1018
Hpy166II GTNNAC 6 cut(s) 214, 470, 666, 816, 977, 1273
Hpy188I TCNGA 6 cut(s) 120, 190, 330, 399, 523, 1146
Hpy188III TCNNGA 5 cut(s) 229, 808, 1196, 1220, 1287
Hpy8I GTNNAC 6 cut(s) 214, 470, 666, 816, 977, 1273
HpyAV CCTTC 4 cut(s) 394, 1039, 1284, 1300
HpyCH4III ACNGT 1 cut(s) 843
HpyCH4IV ACGT 2 cut(s) 538, 850
HpyF10VI GCNNNNNNNGC 5 cut(s) 83, 92, 653, 922, 1070
HpyF3I CTNAG 7 cut(s) 408, 491, 528, 971, 1017, 1130, 1250
HpySE526I ACGT 2 cut(s) 538, 850
Hsp92I GRCGYC 1 cut(s) 1064
Hsp92II CATG 5 cut(s) 54, 561, 613, 1046, 1279
HspAI GCGC 1 cut(s) 1064
KasI GGCGCC 1 cut(s) 1063
KflI GGGWCCC 1 cut(s) 772
Kzo9I GATC 3 cut(s) 172, 190, 603
LmnI GCTCC 2 cut(s) 475, 934
Lsp1109I GCAGC 8 cut(s) 59, 496, 740, 880, 883, 934, 1000, 1051
LweI GCATC 5 cut(s) 32, 150, 386, 514, 740
MaeII ACGT 2 cut(s) 538, 850
MaeIII GTNAC 4 cut(s) 4, 715, 1124, 1153
MalI GATC 3 cut(s) 174, 192, 605
MboI GATC 3 cut(s) 172, 190, 603
MboII GAAGA 3 cut(s) 607, 1042, 1315
MfeI CAATTG 1 cut(s) 1149
MhlI GDGCHC 1 cut(s) 867
Mly113I GGCGCC 1 cut(s) 1064
MlyI GAGTC 4 cut(s) 7, 472, 1189, 1242
MmeI TCCRAC 1 cut(s) 825
MseI TTAA 3 cut(s) 456, 912, 1315
MslI CAYNNNNRTG 1 cut(s) 483
MspA1I CMGCKG 1 cut(s) 893
MspI CCGG 2 cut(s) 1067, 1184
MspR9I CCNGG 4 cut(s) 197, 336, 365, 1185
MunI CAATTG 1 cut(s) 1149
MvaI CCWGG 3 cut(s) 197, 336, 365
MwoI GCNNNNNNNGC 5 cut(s) 83, 92, 653, 922, 1070
NarI GGCGCC 1 cut(s) 1064
NciI CCSGG 1 cut(s) 1185
NcoI CCATGG 1 cut(s) 557
NdeII GATC 3 cut(s) 172, 190, 603
NlaIII CATG 5 cut(s) 54, 561, 613, 1046, 1279
NlaIV GGNNCC 5 cut(s) 405, 497, 773, 774, 1065
NmuCI GTSAC 2 cut(s) 715, 1153
NspI RCATGY 2 cut(s) 54, 613
PfeI GAWTC 5 cut(s) 185, 225, 858, 877, 1192
PfoI TCCNGGA 1 cut(s) 1183
PkrI GCNGC 8 cut(s) 49, 511, 730, 895, 898, 924, 1015, 1041
PleI GAGTC 4 cut(s) 7, 471, 1188, 1242
PluTI GGCGCC 1 cut(s) 1067
PpsI GAGTC 4 cut(s) 7, 471, 1188, 1242
PpuMI RGGWCCY 1 cut(s) 772
PshAI GACNNNNGTC 1 cut(s) 417
Psp5II RGGWCCY 1 cut(s) 772
Psp6I CCWGG 3 cut(s) 195, 334, 363
PspGI CCWGG 3 cut(s) 195, 334, 363
PspN4I GGNNCC 5 cut(s) 405, 497, 773, 774, 1065
PspPI GGNCC 2 cut(s) 772, 1213
PspPPI RGGWCCY 1 cut(s) 772
PstI CTGCAG 3 cut(s) 49, 730, 901
PstNI CAGNNNCTG 2 cut(s) 32, 896
PvuII CAGCTG 1 cut(s) 893
RsaI GTAC 5 cut(s) 310, 571, 681, 966, 1274
RsaNI GTAC 5 cut(s) 309, 570, 680, 965, 1273
RseI CAYNNNNRTG 1 cut(s) 483
SaqAI TTAA 3 cut(s) 456, 912, 1315
SatI GCNGC 8 cut(s) 48, 510, 729, 894, 897, 923, 1014, 1040
Sau3AI GATC 3 cut(s) 172, 190, 603
Sau96I GGNCC 2 cut(s) 772, 1213
SchI GAGTC 4 cut(s) 7, 472, 1189, 1242
ScrFI CCNGG 4 cut(s) 197, 336, 365, 1185
SduI GDGCHC 1 cut(s) 867
SfaNI GCATC 5 cut(s) 32, 150, 386, 514, 740
SfcI CTRYAG 3 cut(s) 45, 726, 897
SfoI GGCGCC 1 cut(s) 1065
SinI GGWCC 1 cut(s) 772
SmiMI CAYNNNNRTG 1 cut(s) 483
SsiI CCGC 5 cut(s) 170, 272, 339, 607, 968
SspDI GGCGCC 1 cut(s) 1063
SspI AATATT 1 cut(s) 998
StyD4I CCNGG 4 cut(s) 195, 334, 363, 1183
StyI CCWWGG 1 cut(s) 557
TaaI ACNGT 1 cut(s) 843
TaiI ACGT 2 cut(s) 541, 853
TaqI TCGA 3 cut(s) 57, 322, 875
TatI WGTACW 1 cut(s) 1272
TfiI GAWTC 5 cut(s) 185, 225, 858, 877, 1192
Tru1I TTAA 3 cut(s) 456, 912, 1315
Tru9I TTAA 3 cut(s) 456, 912, 1315
TscAI CASTG 4 cut(s) 15, 112, 906, 1096
TseFI GTSAC 2 cut(s) 715, 1153
TseI GCWGC 8 cut(s) 47, 509, 728, 893, 896, 922, 1013, 1039
Tsp45I GTSAC 2 cut(s) 715, 1153
TspDTI ATGAA 6 cut(s) 91, 444, 501, 729, 1021, 1104
TspRI CASTG 4 cut(s) 15, 112, 906, 1096
VpaK11BI GGWCC 1 cut(s) 772
XapI RAATTY 5 cut(s) 248, 261, 987, 1111, 1261
XceI RCATGY 2 cut(s) 54, 613
XmiI GTMKAC 3 cut(s) 665, 815, 976
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.