FvH4_4g35941

Protein NRT1 PTR FAMILY

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Forward (+)
33072174 .. 33074973
2800 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g35941.t1

Sequence Viewer

Length: 1755 bp
ATGAGTTCTCATGAGGATGAAAGAGTTCTTTTAGATGATAAGTTTCTGCAGAATGATGGCAGTGGAGTGTACACTGGAGACGGTTCAGTTGACAGCAAGGGAAGGCCTGCCCTTAAAGATAAAACTGGCCAGTGGAAAGCATGCTCCTTTGTTCTTGGTACCTTTTTTTGTGAACGATTGGCCTTCTATGGGATTTCTACCAATCTTGTCAATTATCTTCTTGACACACTACATGAAGGAACTGTTGATGCTGCAACAGCTATTACCAATTGGAAAGGAACTTGCTATCTTACACCTCTCATCGGGGCCATCATAGCCGATACTTACTGGGGAAGATATTGGACAATCGCTGGTTTCACCCTAGTTTACTTGATTGGAATGTGTACACTGACTCTTTCGGCCTCAATTCCTGCACTAGAGCCTGCTGCATGTGTTAATTCTGTATGCCCCGAAGCTACTACTGCACAATATGCTGTATTCATTACTGGACTGTATCTCATTGCATTAGGGACTGGAGGCATCAAACCTTGTATATGGCCTTTTGGAGCAGATCAGTTTGACGATTCCGATCCCCAGGAAAGAGTGAAGAAGGGATCCTATTTCAACTGGTTTTACTTTTCTCAAAACATTGGTGCTATTATAGCAAGCAGTTTACTGGTATGGATTCAGGACGATGTTGGGTGGGGAATTGGATTTGGAATTCCTACTGCGGTTATGGGAGTTTGCATTGCTAGTTTATTTTTAGGTACTTCTCTGTACCGATTTCAGAAACCAGGCGGCAGTCCCCTCACAAGAATATGCCAGGTTTTGGTTGCATCATACCATAAAAGAAACCTGAAAGTGCCTGAAGACGATAGTCTCCTTTATGAAACACAAGACATTAGCTCTGCCATTGTAGGGAGTCGTAAGCTGGAGCACAGCAATGAGCTGAGGTGCCTTGATAAAGCTGCTTTGGTGTCAGATGCTGAGATTGAATATGGGGACTTCTCAAATCCATGGAGGCTTTGTACTGTTACACAGGTAGAGGAACTGAAGATTTTGATCCGCATGTTCCCAATCTGGGCAACCGGAATTGTGTTTTCTGCCGTTTATGCCCAAATGTCTACATTGTTTGTGGTACAAGGAAAGCTCATGGACAGAGTTGTTGGTTCTGTCACCATTCCTGCAGCATCTCTTTCATTTTTTAATTTTGTAAGTGTTATTATCTGGGTCCCTATCTACGATACGATAATCATTCCAATCGTTAAGAAGTATACAGGCAAGGAGAGGGGTTTCTCACAGTTGGAACGTATGGGAATTGGGCTCTTTGTATCAATTCTATGTATGTCAGCTGCTGCAGTGGTAGAGATTAAGCGATTGCAGCTTGTCAGGGAGCTTGGCTTGGTTGATGAAGAGGTTGCTGTTCCGCTTAGTATACTTTGGCAAATTCCACAGTATTTTTTGTTAGGCGCTGCTGAAGTTTTCACCTTCATTGGGCAGCATGAGTTTTTCTATGAGCAAGCGCCAGATGCCATGAGGAGTTTGTGCAGTGCATTGTCTCTTTTGACAAATTCATTGGGGAGTTACCTCAGCTCTCTCATTCTCACAATCGTCACCTCAATCACTACACAGGGAGGGAGTCCAGGATGGATTCCAGACAACTTGAATGAGGGCCATCTTGATTATTTCTACTGGCTTTTGGCTGGACTCAGTCTCCTCAATTTGCTGGTATACATGGTCTTTTCCAGAAGGTATAAGGAGAAGAAAGCTGCTTAA

Protein Analysis

585

Amino Acids

64.49

Weight (kDa)

5.19

Isoelectric Point (pI)

27.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_1 PF07690 53 - 523 1.9e-06 Major Facilitator Superfamily
PTR2 PF00854 113 - 544 1.1e-120 POT family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 158
AccB1I GGYRCC 2 cut(s) 158, 933
AccB7I CCANNNNNTGG 1 cut(s) 808
AccI GTMKAC 4 cut(s) 1103, 1253, 1414, 1710
AciI CCGC 4 cut(s) 710, 777, 1045, 1406
AclWI GGATC 4 cut(s) 563, 588, 601, 1036
AcoI YGGCCR 1 cut(s) 127
AcsI RAATTY 3 cut(s) 699, 1425, 1549
AcuI CTGAAG 3 cut(s) 867, 1052, 1476
AfaI GTAC 7 cut(s) 71, 160, 385, 748, 758, 1009, 1119
AfiI CCNNNNNNNGG 6 cut(s) 189, 302, 808, 897, 1060, 1473
AgsI TTSAA 3 cut(s) 604, 974, 1645
AjnI CCWGG 4 cut(s) 573, 772, 801, 1621
Alw21I GWGCWC 1 cut(s) 918
Alw26I GTCTC 4 cut(s) 72, 863, 1542, 1697
AlwI GGATC 4 cut(s) 563, 588, 601, 1036
AlwNI CAGNNNCTG 2 cut(s) 965, 1334
AoxI GGCC 7 cut(s) 104, 127, 180, 306, 399, 536, 1651
ApoI RAATTY 3 cut(s) 699, 1425, 1549
Asp700I GAANNNNTTC 1 cut(s) 24
Asp718I GGTACC 1 cut(s) 158
AspLEI GCGC 2 cut(s) 1451, 1504
AspS9I GGNCC 3 cut(s) 306, 1210, 1651
AsuHPI GGTGA 4 cut(s) 349, 1147, 1456, 1585
AvaII GGWCC 1 cut(s) 1210
BalI TGGCCA 1 cut(s) 129
BamHI GGATCC 1 cut(s) 593
BanI GGYRCC 2 cut(s) 158, 933
BanII GRGCYC 1 cut(s) 1305
BbsI GAAGAC 1 cut(s) 855
Bbv12I GWGCWC 1 cut(s) 918
BbvCI CCTCAGC 2 cut(s) 929, 1568
BccI CCATC 4 cut(s) 50, 317, 1620, 1662
BceAI ACGGC 1 cut(s) 1070
BciT130I CCWGG 4 cut(s) 575, 774, 803, 1623
BcoDI GTCTC 4 cut(s) 72, 863, 1542, 1697
BfaI CTAG 3 cut(s) 362, 416, 732
BfmI CTRYAG 3 cut(s) 47, 1164, 1335
BfoI RGCGCY 2 cut(s) 1452, 1505
Bme1390I CCNGG 4 cut(s) 575, 774, 803, 1623
Bme18I GGWCC 1 cut(s) 1210
BmgT120I GGNCC 3 cut(s) 306, 1210, 1651
BmiI GGNNCC 6 cut(s) 160, 307, 595, 935, 1211, 1212
BmrFI CCNGG 4 cut(s) 575, 774, 803, 1623
BmrI ACTGGG 1 cut(s) 337
BmsI GCATC 6 cut(s) 238, 528, 824, 952, 1178, 1498
BmuI ACTGGG 1 cut(s) 337
BoxI GACNNNNGTC 1 cut(s) 855
BpiI GAAGAC 1 cut(s) 855
BpmI CTGGAG 3 cut(s) 96, 534, 932
Bpu10I CCTNAGC 2 cut(s) 929, 1568
BsaBI GATNNNNATC 2 cut(s) 567, 1040
BsaJI CCNNGG 2 cut(s) 573, 995
BsaWI WCCGGW 1 cut(s) 1067
BsaXI ACNNNNNCTCC 4 cut(s) 991, 1021, 1677, 1707
Bsc4I CCNNNNNNNGG 6 cut(s) 189, 302, 808, 897, 1060, 1473
Bse1I ACTGG 9 cut(s) 79, 130, 130, 332, 490, 517, 611, 660, 1676
Bse3DI GCAATG 3 cut(s) 498, 726, 928
Bse8I GATNNNNATC 2 cut(s) 567, 1040
BseBI CCWGG 4 cut(s) 575, 774, 803, 1623
BseDI CCNNGG 2 cut(s) 573, 995
BseGI GGATG 2 cut(s) 22, 1631
BseJI GATNNNNATC 2 cut(s) 567, 1040
BseLI CCNNNNNNNGG 6 cut(s) 189, 302, 808, 897, 1060, 1473
BseMI GCAATG 3 cut(s) 498, 726, 928
BseMII CTCAG 4 cut(s) 920, 957, 1582, 1702
BseNI ACTGG 9 cut(s) 79, 130, 130, 332, 490, 517, 611, 660, 1676
BseRI GAGGAG 2 cut(s) 1531, 1685
BsgI GTGCAG 3 cut(s) 396, 447, 1546
BshFI GGCC 7 cut(s) 106, 129, 182, 308, 401, 538, 1653
BshNI GGYRCC 2 cut(s) 158, 933
BsiHKAI GWGCWC 1 cut(s) 918
BsiSI CCGG 1 cut(s) 1068
BslFI GGGAC 4 cut(s) 523, 768, 995, 1196
BslI CCNNNNNNNGG 6 cut(s) 189, 302, 808, 897, 1060, 1473
BsmAI GTCTC 4 cut(s) 72, 863, 1542, 1697
BsmBI CGTCTC 1 cut(s) 72
BsmFI GGGAC 4 cut(s) 523, 768, 995, 1196
BsnI GGCC 7 cut(s) 106, 129, 182, 308, 401, 538, 1653
Bsp1286I GDGCHC 2 cut(s) 918, 1305
Bsp1407I TGTACA 2 cut(s) 69, 383
Bsp143I GATC 4 cut(s) 550, 568, 593, 1041
Bsp19I CCATGG 1 cut(s) 995
BspACI CCGC 4 cut(s) 710, 777, 1045, 1406
BspANI GGCC 7 cut(s) 106, 129, 182, 308, 401, 538, 1653
BspCNI CTCAG 4 cut(s) 921, 958, 1581, 1701
BspHI TCATGA 1 cut(s) 10
BspLI GGNNCC 6 cut(s) 160, 307, 595, 935, 1211, 1212
BspMAI CTGCAG 3 cut(s) 51, 1168, 1339
BspPI GGATC 4 cut(s) 563, 588, 601, 1036
BspT107I GGYRCC 2 cut(s) 158, 933
BsrDI GCAATG 3 cut(s) 498, 726, 928
BsrGI TGTACA 2 cut(s) 69, 383
BsrI ACTGG 9 cut(s) 79, 130, 130, 332, 490, 517, 611, 660, 1676
BssECI CCNNGG 2 cut(s) 573, 995
BssMI GATC 4 cut(s) 550, 568, 593, 1041
BssNAI GTATAC 3 cut(s) 1254, 1415, 1711
BssT1I CCWWGG 1 cut(s) 995
Bst1107I GTATAC 3 cut(s) 1254, 1415, 1711
Bst2UI CCWGG 4 cut(s) 575, 774, 803, 1623
Bst4CI ACNGT 6 cut(s) 83, 244, 492, 1012, 1281, 1434
Bst6I CTCTTC 1 cut(s) 1386
BstAPI GCANNNNNTGC 1 cut(s) 470
BstAUI TGTACA 2 cut(s) 69, 383
BstC8I GCNNGC 5 cut(s) 108, 142, 423, 646, 1500
BstDEI CTNAG 5 cut(s) 929, 966, 1409, 1568, 1688
BstDSI CCRYGG 1 cut(s) 995
BstF5I GGATG 2 cut(s) 22, 1631
BstH2I RGCGCY 2 cut(s) 1452, 1505
BstHHI GCGC 2 cut(s) 1451, 1504
BstKTI GATC 4 cut(s) 553, 571, 596, 1044
BstMAI GTCTC 4 cut(s) 72, 863, 1542, 1697
BstMBI GATC 4 cut(s) 550, 568, 593, 1041
BstMWI GCNNNNNNNGC 8 cut(s) 257, 314, 461, 470, 641, 1091, 1360, 1508
BstNI CCWGG 4 cut(s) 575, 774, 803, 1623
BstNSI RCATGY 3 cut(s) 144, 432, 1051
BstPAI GACNNNNGTC 1 cut(s) 855
BstSCI CCNGG 4 cut(s) 573, 772, 801, 1621
BstSFI CTRYAG 3 cut(s) 47, 1164, 1335
BstV2I GAAGAC 1 cut(s) 855
BstX2I RGATCY 1 cut(s) 593
BstYI RGATCY 1 cut(s) 593
BstZ17I GTATAC 3 cut(s) 1254, 1415, 1711
BsuRI GGCC 7 cut(s) 106, 129, 182, 308, 401, 538, 1653
BtgI CCRYGG 1 cut(s) 995
BtsCI GGATG 2 cut(s) 22, 1631
BtsI GCAGTG 3 cut(s) 67, 1344, 1534
BtsIMutI CAGTG 6 cut(s) 67, 72, 137, 386, 1344, 1534
Cac8I GCNNGC 5 cut(s) 108, 142, 423, 646, 1500
CaiI CAGNNNCTG 2 cut(s) 965, 1334
CciI TCATGA 1 cut(s) 10
CfoI GCGC 2 cut(s) 1451, 1504
Cfr13I GGNCC 3 cut(s) 306, 1210, 1651
Csp6I GTAC 7 cut(s) 70, 159, 384, 747, 757, 1008, 1118
CviQI GTAC 7 cut(s) 70, 159, 384, 747, 757, 1008, 1118
DdeI CTNAG 5 cut(s) 929, 966, 1409, 1568, 1688
DpnI GATC 4 cut(s) 552, 570, 595, 1043
DpnII GATC 4 cut(s) 550, 568, 593, 1041
EaeI YGGCCR 1 cut(s) 127
Eam1104I CTCTTC 1 cut(s) 1386
EarI CTCTTC 1 cut(s) 1386
Eco130I CCWWGG 1 cut(s) 995
Eco147I AGGCCT 1 cut(s) 106
Eco24I GRGCYC 1 cut(s) 1305
Eco47I GGWCC 1 cut(s) 1210
Eco57I CTGAAG 3 cut(s) 867, 1052, 1476
EcoO109I RGGNCCY 1 cut(s) 1210
EcoRI GAATTC 1 cut(s) 699
EcoRII CCWGG 4 cut(s) 573, 772, 801, 1621
EcoT14I CCWWGG 1 cut(s) 995
EcoT38I GRGCYC 1 cut(s) 1305
ErhI CCWWGG 1 cut(s) 995
Esp3I CGTCTC 1 cut(s) 72
FaqI GGGAC 4 cut(s) 523, 768, 995, 1196
FblI GTMKAC 4 cut(s) 1103, 1253, 1414, 1710
FokI GGATG 2 cut(s) 29, 1638
FriOI GRGCYC 1 cut(s) 1305
FspBI CTAG 3 cut(s) 362, 416, 732
GlaI GCGC 2 cut(s) 1450, 1503
GsuI CTGGAG 3 cut(s) 96, 534, 932
HaeII RGCGCY 2 cut(s) 1452, 1505
HaeIII GGCC 7 cut(s) 106, 129, 182, 308, 401, 538, 1653
HapII CCGG 1 cut(s) 1068
HhaI GCGC 2 cut(s) 1451, 1504
Hin6I GCGC 2 cut(s) 1449, 1502
HinP1I GCGC 2 cut(s) 1449, 1502
HincII GTYRAC 1 cut(s) 91
HindII GTYRAC 1 cut(s) 91
HinfI GANTC 7 cut(s) 391, 563, 664, 901, 1618, 1630, 1686
HpaII CCGG 1 cut(s) 1068
HphI GGTGA 4 cut(s) 349, 1147, 1456, 1585
Hpy188I TCNGA 3 cut(s) 568, 768, 961
Hpy188III TCNNGA 6 cut(s) 11, 221, 668, 1634, 1658, 1725
HpyAV CCTTC 6 cut(s) 96, 193, 230, 583, 1477, 1722
HpyCH4III ACNGT 6 cut(s) 83, 244, 492, 1012, 1281, 1434
HpyCH4IV ACGT 1 cut(s) 1288
HpyF10VI GCNNNNNNNGC 8 cut(s) 257, 314, 461, 470, 641, 1091, 1360, 1508
HpyF3I CTNAG 5 cut(s) 929, 966, 1409, 1568, 1688
HpySE526I ACGT 1 cut(s) 1288
HspAI GCGC 2 cut(s) 1449, 1502
KflI GGGWCCC 1 cut(s) 1210
KpnI GGTACC 1 cut(s) 162
Kzo9I GATC 4 cut(s) 550, 568, 593, 1041
LmnI GCTCC 4 cut(s) 149, 545, 913, 1372
LweI GCATC 6 cut(s) 238, 528, 824, 952, 1178, 1498
MaeI CTAG 3 cut(s) 362, 416, 732
MaeII ACGT 1 cut(s) 1288
MaeIII GTNAC 4 cut(s) 1012, 1153, 1562, 1591
MalI GATC 4 cut(s) 552, 570, 595, 1043
MboI GATC 4 cut(s) 550, 568, 593, 1041
MboII GAAGA 7 cut(s) 209, 345, 598, 860, 1045, 1403, 1753
MfeI CAATTG 1 cut(s) 268
MflI RGATCY 1 cut(s) 593
MhlI GDGCHC 2 cut(s) 918, 1305
MlsI TGGCCA 1 cut(s) 129
MluNI TGGCCA 1 cut(s) 129
MlyI GAGTC 4 cut(s) 385, 910, 1627, 1680
MmeI TCCRAC 1 cut(s) 1263
Mox20I TGGCCA 1 cut(s) 129
MroXI GAANNNNTTC 1 cut(s) 24
MscI TGGCCA 1 cut(s) 129
MseI TTAA 6 cut(s) 114, 435, 1185, 1245, 1350, 1753
MslI CAYNNNNRTG 2 cut(s) 15, 921
Msp20I TGGCCA 1 cut(s) 129
MspA1I CMGCKG 1 cut(s) 1331
MspI CCGG 1 cut(s) 1068
MspR9I CCNGG 4 cut(s) 575, 774, 803, 1623
MunI CAATTG 1 cut(s) 268
MvaI CCWGG 4 cut(s) 575, 774, 803, 1623
MwoI GCNNNNNNNGC 8 cut(s) 257, 314, 461, 470, 641, 1091, 1360, 1508
NcoI CCATGG 1 cut(s) 995
NdeII GATC 4 cut(s) 550, 568, 593, 1041
NlaIV GGNNCC 6 cut(s) 160, 307, 595, 935, 1211, 1212
NmuCI GTSAC 2 cut(s) 1153, 1591
NspI RCATGY 3 cut(s) 144, 432, 1051
PaeI GCATGC 1 cut(s) 144
PagI TCATGA 1 cut(s) 10
PceI AGGCCT 1 cut(s) 106
PdmI GAANNNNTTC 1 cut(s) 24
PfeI GAWTC 3 cut(s) 563, 664, 1630
PflFI GACNNNGTC 1 cut(s) 1689
PflMI CCANNNNNTGG 1 cut(s) 808
PfoI TCCNGGA 1 cut(s) 1621
PleI GAGTC 4 cut(s) 385, 909, 1626, 1680
PpsI GAGTC 4 cut(s) 385, 909, 1626, 1680
PpuMI RGGWCCY 1 cut(s) 1210
PshAI GACNNNNGTC 1 cut(s) 855
Psp5II RGGWCCY 1 cut(s) 1210
Psp6I CCWGG 4 cut(s) 573, 772, 801, 1621
PspGI CCWGG 4 cut(s) 573, 772, 801, 1621
PspN4I GGNNCC 6 cut(s) 160, 307, 595, 935, 1211, 1212
PspPI GGNCC 3 cut(s) 306, 1210, 1651
PspPPI RGGWCCY 1 cut(s) 1210
PstI CTGCAG 3 cut(s) 51, 1168, 1339
PstNI CAGNNNCTG 2 cut(s) 965, 1334
PsuI RGATCY 1 cut(s) 593
PsyI GACNNNGTC 1 cut(s) 1689
PvuII CAGCTG 1 cut(s) 1331
RsaI GTAC 7 cut(s) 71, 160, 385, 748, 758, 1009, 1119
RsaNI GTAC 7 cut(s) 70, 159, 384, 747, 757, 1008, 1118
RseI CAYNNNNRTG 2 cut(s) 15, 921
SaqAI TTAA 6 cut(s) 114, 435, 1185, 1245, 1350, 1753
Sau3AI GATC 4 cut(s) 550, 568, 593, 1041
Sau96I GGNCC 3 cut(s) 306, 1210, 1651
SchI GAGTC 4 cut(s) 385, 910, 1627, 1680
ScrFI CCNGG 4 cut(s) 575, 774, 803, 1623
SduI GDGCHC 2 cut(s) 918, 1305
SfaNI GCATC 6 cut(s) 238, 528, 824, 952, 1178, 1498
SfcI CTRYAG 3 cut(s) 47, 1164, 1335
SinI GGWCC 1 cut(s) 1210
SmiMI CAYNNNNRTG 2 cut(s) 15, 921
SphI GCATGC 1 cut(s) 144
SseBI AGGCCT 1 cut(s) 106
SsiI CCGC 4 cut(s) 710, 777, 1045, 1406
SspMI CTAG 3 cut(s) 362, 416, 732
StuI AGGCCT 1 cut(s) 106
StyD4I CCNGG 4 cut(s) 573, 772, 801, 1621
StyI CCWWGG 1 cut(s) 995
TaaI ACNGT 6 cut(s) 83, 244, 492, 1012, 1281, 1434
TaiI ACGT 1 cut(s) 1291
TatI WGTACW 3 cut(s) 69, 383, 1007
TauI GCSGC 1 cut(s) 780
TfiI GAWTC 3 cut(s) 563, 664, 1630
Tru1I TTAA 6 cut(s) 114, 435, 1185, 1245, 1350, 1753
Tru9I TTAA 6 cut(s) 114, 435, 1185, 1245, 1350, 1753
TscAI CASTG 6 cut(s) 67, 79, 137, 393, 1344, 1534
TseFI GTSAC 2 cut(s) 1153, 1591
Tsp45I GTSAC 2 cut(s) 1153, 1591
TspDTI ATGAA 8 cut(s) 33, 249, 469, 882, 1167, 1404, 1459, 1542
TspRI CASTG 6 cut(s) 67, 79, 137, 393, 1344, 1534
Tth111I GACNNNGTC 1 cut(s) 1689
Van91I CCANNNNNTGG 1 cut(s) 808
VpaK11BI GGWCC 1 cut(s) 1210
XapI RAATTY 3 cut(s) 699, 1425, 1549
XceI RCATGY 3 cut(s) 144, 432, 1051
XmiI GTMKAC 4 cut(s) 1103, 1253, 1414, 1710
XmnI GAANNNNTTC 1 cut(s) 24
XspI CTAG 3 cut(s) 362, 416, 732
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.