Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0003812

Physical Location & Seq

Genomic Coordinates Reverse (-)

53493902 .. 53496454

Gene Structure 2553 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0362600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGTCAAACGGACAATGTGAAAAGAACGAACCTACAAACGCAGATATGGTCGGAAAGAGGAAGGAAACGACGACTTCCTTGGAGGACTTGATAGAGAATGCAGGAGGTTGCGCTGTCGTGGACGGAGGGTTTGCCACACAGCTCGAGAAACACGGCGCTGCTATCAACGACACTCTCTGGAGCGCCGTTTGCCTCATCAAGGACTCCGACCTCATCAAAAGGGTCCACTTGGAATACTTGGAAGCCGGCGCCGATGTTCTGGTCACTTCATCTTACCAGGCAACAATTCCGGGATTTTTGTCCAAGGGACTGTCCATCGAAGAAGGGGAGTCATTGCTGAAGAAGAGTGTGACGTTAGCTGTCGAAGCTCGTAATAGTTTCTGGGAGGCAGTGAAAGTAAGTCCCCGGCATCATCGCTATAACAGGGCTTTGGTTGCGGCCTCTATCGGAAGCTATGGGGCTTATCTTGCTGATGGTTCTGAATACAGTGGGGATTATGGACCAAATGTGGATATGGATAAGCTGAAGGATTTCCACCGCCGCAGATTGCAAGTTCTTGTGGAAGCAGGTCCGGATTTACTTGCATTTGAGACCATTCCTAATAAGCTTGAAGCTCAGGCCTGCGTTGAGCTGCTGGAAGAAGAAAACATTCATATGCCATCTTGGATATGTTTCAGCTCTGTAGATGGTGAGAATGCGCCATCTGGAGAGAACTTCAAGGAATGCCTTGACATAATAAATAGCAGTAACAAAGTAAACGCAGTGGGGATAAATTGTGCACCTCCTCAGTTGATTGAAAGTCTCATCTGCAAATTGAAGCAGTTAACCAGTAAGGCAATTGTTGTGTACCCTAATAGTGGTGAGATATGGGATGGCAAAGCAAAGAGATGGCTGCCTTCCAAGTGCTTCGATGATGACGAGTTCGAATGCTTTGCGACAAGATGGCGCGATTCAGGAGCTAAGCTCATTGGAGGCTGTTGCCGGACAACACCATCAACCATTCAAGCAATTTCTAAGGTTCTAAAGGGAAAATCCCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0006810 GO:0006857 GO:0008150 GO:0009705 GO:0012505 GO:0015334 GO:0015833 GO:0016020 GO:0022857 GO:0031090 GO:0035672 GO:0035673 GO:0042886 GO:0042887 GO:0042937 GO:0042938 GO:0042939 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0098588 GO:0098805 GO:1904680

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

346

Amino Acids

37.81

Weight (kDa)

5.26

Isoelectric Point (pI)

39.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
S-methyl_trans	PF02574	39 - 340	7.7e-77	Homocysteine S-methyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003812)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62200 AT1G62200 AT1G62200 AT2G02040
fragaria_vesca	FvH4_3g15070 FvH4_4g35940 FvH4_4g35941
malus_domestica	MD13G1013700.v1.1 MD16G1010600.v1.1 MD16G1010700.v1.1
prunus_persica	Prupe.1G340000_v2.0.a1 Prupe.1G340000_v2.0.a1 Prupe.1G340000_v2.0.a1 Prupe.1G340100_v2.0.a1 Prupe.1G340100_v2.0.a1
pyrus_communis	pycom13g01150 pycom16g01030 pycom16g01040
rosa_chinensis	RchiOBHm_Chr4g0445571 RchiOBHm_Chr4g0445581
rosa_laevigata	RLG00000005729
rosa_multiflora	Rmu_ssc0000253.1_g000010 Rmu_ssc0000253.1_g000011
rosa_roxburghii	Rroxscaffold_5G00386040 Rroxscaffold_5G00386050
rosa_rugosa	Rorug04G0362600 Rorug04G0362600
rosa_samantha	Rh4AG424000 Rh4BG436000 Rh4BG436100 Rh4CG450700 Rh4DG432500
rosa_wichuraiana	Rw4G036340 Rw4G036350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	557
AccB1I	GGYRCC	1 cut(s)	248
AccII	CGCG	1 cut(s)	948
AccIII	TCCGGA	1 cut(s)	571
AciI	CCGC	3 cut(s)	437, 538, 541
AcuI	CTGAAG	2 cut(s)	359, 545
AcyI	GRCGYC	1 cut(s)	249
AfaI	GTAC	1 cut(s)	848
AfiI	CCNNNNNNNGG	2 cut(s)	199, 857
AgsI	TTSAA	5 cut(s)	611, 718, 797, 817, 1004
AjnI	CCWGG	1 cut(s)	276
Alw21I	GWGCWC	1 cut(s)	781
Alw26I	GTCTC	2 cut(s)	584, 806
Alw44I	GTGCAC	1 cut(s)	777
Ama87I	CYCGRG	1 cut(s)	143
Aor13HI	TCCGGA	1 cut(s)	571
AoxI	GGCC	2 cut(s)	438, 618
ApaLI	GTGCAC	1 cut(s)	777
ApeKI	GCWGC	3 cut(s)	158, 631, 892
ArsI	GACNNNNNNTTYG	2 cut(s)	113, 145
Asp700I	GAANNNNTTC	2 cut(s)	530, 648
AspLEI	GCGC	6 cut(s)	113, 158, 185, 251, 700, 948
AspS9I	GGNCC	3 cut(s)	223, 500, 569
AsuC2I	CCSGG	2 cut(s)	291, 406
AsuHPI	GGTGA	2 cut(s)	701, 872
AsuII	TTCGAA	1 cut(s)	924
AvaI	CYCGRG	1 cut(s)	143
AvaII	GGWCC	3 cut(s)	223, 500, 569
BaeGI	GKGCMC	1 cut(s)	781
BanI	GGYRCC	1 cut(s)	248
Bbv12I	GWGCWC	1 cut(s)	781
BbvI	GCAGC	3 cut(s)	145, 618, 879
BccI	CCATC	9 cut(s)	323, 467, 667, 680, 709, 866, 882, 936, 1000
BceAI	ACGGC	2 cut(s)	169, 170
BcgI	CGANNNNNNTGC	2 cut(s)	914, 948
BciT130I	CCWGG	1 cut(s)	278
BcnI	CCSGG	2 cut(s)	291, 406
BcoDI	GTCTC	2 cut(s)	584, 806
BfmI	CTRYAG	1 cut(s)	681
BfoI	RGCGCY	3 cut(s)	159, 186, 252
BfuAI	ACCTGC	1 cut(s)	557
BisI	GCNGC	5 cut(s)	159, 438, 541, 632, 893
BlpI	GCTNAGC	1 cut(s)	960
BlsI	GCNGC	5 cut(s)	160, 439, 542, 633, 894
Bme1390I	CCNGG	3 cut(s)	278, 291, 406
Bme18I	GGWCC	3 cut(s)	223, 500, 569
BmeT110I	CYCGRG	1 cut(s)	143
BmgT120I	GGNCC	3 cut(s)	223, 500, 569
BmiI	GGNNCC	2 cut(s)	224, 250
BmrFI	CCNGG	3 cut(s)	278, 291, 406
BmsI	GCATC	1 cut(s)	418
BplI	GAGNNNNNCTC	2 cut(s)	948, 980
BpmI	CTGGAG	2 cut(s)	199, 726
Bpu10I	CCTNAGC	1 cut(s)	615
Bpu1102I	GCTNAGC	1 cut(s)	960
Bpu14I	TTCGAA	1 cut(s)	924
BpuMI	CCSGG	2 cut(s)	291, 406
BsaHI	GRCGYC	1 cut(s)	249
BsaI	GGTCTC	1 cut(s)	584
BsaJI	CCNNGG	3 cut(s)	78, 303, 404
BsaWI	WCCGGW	1 cut(s)	571
Bsc4I	CCNNNNNNNGG	2 cut(s)	199, 857
Bse118I	RCCGGY	1 cut(s)	245
Bse1I	ACTGG	1 cut(s)	828
Bse3DI	GCAATG	1 cut(s)	332
BseAI	TCCGGA	1 cut(s)	571
BseBI	CCWGG	1 cut(s)	278
BseDI	CCNNGG	3 cut(s)	78, 303, 404
BseGI	GGATG	1 cut(s)	877
BseLI	CCNNNNNNNGG	2 cut(s)	199, 857
BseMI	GCAATG	1 cut(s)	332
BseMII	CTCAG	2 cut(s)	629, 800
BseNI	ACTGG	1 cut(s)	828
BseRI	GAGGAG	1 cut(s)	774
BseSI	GKGCMC	1 cut(s)	781
BseXI	GCAGC	3 cut(s)	145, 618, 879
Bsh1236I	CGCG	1 cut(s)	948
BshFI	GGCC	2 cut(s)	440, 620
BshNI	GGYRCC	1 cut(s)	248
BsiHKAI	GWGCWC	1 cut(s)	781
BsiHKCI	CYCGRG	1 cut(s)	143
BsiSI	CCGG	5 cut(s)	246, 290, 406, 572, 982
BslFI	GGGAC	2 cut(s)	321, 387
BslI	CCNNNNNNNGG	2 cut(s)	199, 857
BsmAI	GTCTC	2 cut(s)	584, 806
BsmFI	GGGAC	2 cut(s)	321, 387
BsmI	GAATGC	4 cut(s)	103, 700, 728, 932
BsnI	GGCC	2 cut(s)	440, 620
Bso31I	GGTCTC	1 cut(s)	584
BsoBI	CYCGRG	1 cut(s)	143
Bsp119I	TTCGAA	1 cut(s)	924
Bsp1286I	GDGCHC	1 cut(s)	781
Bsp13I	TCCGGA	1 cut(s)	571
Bsp1720I	GCTNAGC	1 cut(s)	960
BspACI	CCGC	3 cut(s)	437, 538, 541
BspANI	GGCC	2 cut(s)	440, 620
BspCNI	CTCAG	2 cut(s)	628, 799
BspEI	TCCGGA	1 cut(s)	571
BspFNI	CGCG	1 cut(s)	948
BspLI	GGNNCC	2 cut(s)	224, 250
BspMI	ACCTGC	1 cut(s)	557
BspT104I	TTCGAA	1 cut(s)	924
BspT107I	GGYRCC	1 cut(s)	248
BspTNI	GGTCTC	1 cut(s)	584
BsrDI	GCAATG	1 cut(s)	332
BsrFI	RCCGGY	1 cut(s)	245
BsrI	ACTGG	1 cut(s)	828
BssAI	RCCGGY	1 cut(s)	245
BssECI	CCNNGG	3 cut(s)	78, 303, 404
BssNI	GRCGYC	1 cut(s)	249
BssT1I	CCWWGG	2 cut(s)	78, 303
Bst2UI	CCWGG	1 cut(s)	278
Bst4CI	ACNGT	2 cut(s)	312, 488
Bst6I	CTCTTC	1 cut(s)	338
BstACI	GRCGYC	1 cut(s)	249
BstBI	TTCGAA	1 cut(s)	924
BstC8I	GCNNGC	2 cut(s)	247, 622
BstDEI	CTNAG	4 cut(s)	615, 786, 960, 1014
BstENI	CCTNNNNNAGG	1 cut(s)	197
BstF5I	GGATG	1 cut(s)	877
BstFNI	CGCG	1 cut(s)	948
BstH2I	RGCGCY	3 cut(s)	159, 186, 252
BstHHI	GCGC	6 cut(s)	113, 158, 185, 251, 700, 948
BstMAI	GTCTC	2 cut(s)	584, 806
BstMWI	GCNNNNNNNGC	4 cut(s)	189, 365, 434, 467
BstNI	CCWGG	1 cut(s)	278
BstSCI	CCNGG	3 cut(s)	276, 289, 404
BstSFI	CTRYAG	1 cut(s)	681
BstSLI	GKGCMC	1 cut(s)	781
BstUI	CGCG	1 cut(s)	948
BstV1I	GCAGC	3 cut(s)	145, 618, 879
BsuRI	GGCC	2 cut(s)	440, 620
BtgZI	GCGATG	1 cut(s)	398
BtsCI	GGATG	1 cut(s)	877
BtsI	GCAGTG	2 cut(s)	396, 768
BtsIMutI	CAGTG	3 cut(s)	396, 493, 768
BveI	ACCTGC	1 cut(s)	557
Cac8I	GCNNGC	2 cut(s)	247, 622
CfoI	GCGC	6 cut(s)	113, 158, 185, 251, 700, 948
Cfr10I	RCCGGY	1 cut(s)	245
Cfr13I	GGNCC	3 cut(s)	223, 500, 569
Csp6I	GTAC	1 cut(s)	847
CviQI	GTAC	1 cut(s)	847
DdeI	CTNAG	4 cut(s)	615, 786, 960, 1014
DinI	GGCGCC	1 cut(s)	250
Eam1104I	CTCTTC	1 cut(s)	338
EarI	CTCTTC	1 cut(s)	338
Eco130I	CCWWGG	2 cut(s)	78, 303
Eco147I	AGGCCT	1 cut(s)	620
Eco31I	GGTCTC	1 cut(s)	584
Eco47I	GGWCC	3 cut(s)	223, 500, 569
Eco57I	CTGAAG	2 cut(s)	359, 545
Eco88I	CYCGRG	1 cut(s)	143
EcoNI	CCTNNNNNAGG	1 cut(s)	197
EcoRII	CCWGG	1 cut(s)	276
EcoT14I	CCWWGG	2 cut(s)	78, 303
EgeI	GGCGCC	1 cut(s)	250
EheI	GGCGCC	1 cut(s)	250
ErhI	CCWWGG	2 cut(s)	78, 303
FaqI	GGGAC	2 cut(s)	321, 387
FauNDI	CATATG	1 cut(s)	654
Fnu4HI	GCNGC	5 cut(s)	159, 438, 541, 632, 893
FokI	GGATG	1 cut(s)	884
Fsp4HI	GCNGC	5 cut(s)	159, 438, 541, 632, 893
GlaI	GCGC	6 cut(s)	112, 157, 184, 250, 699, 947
GluI	GCNGC	5 cut(s)	159, 438, 541, 632, 893
GsuI	CTGGAG	2 cut(s)	199, 726
HaeII	RGCGCY	3 cut(s)	159, 186, 252
HaeIII	GGCC	2 cut(s)	440, 620
HapII	CCGG	5 cut(s)	246, 290, 406, 572, 982
HhaI	GCGC	6 cut(s)	113, 158, 185, 251, 700, 948
Hin1I	GRCGYC	1 cut(s)	249
Hin6I	GCGC	6 cut(s)	111, 156, 183, 249, 698, 946
HinP1I	GCGC	6 cut(s)	111, 156, 183, 249, 698, 946
HincII	GTYRAC	1 cut(s)	825
HindII	GTYRAC	1 cut(s)	825
HindIII	AAGCTT	1 cut(s)	605
HinfI	GANTC	3 cut(s)	203, 329, 950
HpaI	GTTAAC	1 cut(s)	825
HpaII	CCGG	5 cut(s)	246, 290, 406, 572, 982
HphI	GGTGA	2 cut(s)	701, 872
Hpy166II	GTNNAC	6 cut(s)	121, 226, 757, 779, 825, 847
Hpy188I	TCNGA	4 cut(s)	53, 208, 449, 481
Hpy188III	TCNNGA	5 cut(s)	145, 178, 572, 705, 954
Hpy8I	GTNNAC	6 cut(s)	121, 226, 757, 779, 825, 847
Hpy99I	CGWCG	1 cut(s)	73
HpyAV	CCTTC	4 cut(s)	55, 317, 520, 906
HpyCH4III	ACNGT	2 cut(s)	312, 488
HpyCH4IV	ACGT	1 cut(s)	353
HpyCH4V	TGCA	5 cut(s)	101, 550, 584, 779, 810
HpyF10VI	GCNNNNNNNGC	4 cut(s)	189, 365, 434, 467
HpyF3I	CTNAG	4 cut(s)	615, 786, 960, 1014
HpySE526I	ACGT	1 cut(s)	353
Hsp92I	GRCGYC	1 cut(s)	249
HspAI	GCGC	6 cut(s)	111, 156, 183, 249, 698, 946
KasI	GGCGCC	1 cut(s)	248
Kpn2I	TCCGGA	1 cut(s)	571
KroI	GCCGGC	1 cut(s)	245
KroNI	GCCGGC	1 cut(s)	247
KspAI	GTTAAC	1 cut(s)	825
LmnI	GCTCC	2 cut(s)	180, 956
Lsp1109I	GCAGC	3 cut(s)	145, 618, 879
LweI	GCATC	1 cut(s)	418
MaeII	ACGT	1 cut(s)	353
MaeIII	GTNAC	3 cut(s)	262, 349, 746
MboII	GAAGA	5 cut(s)	332, 352, 355, 650, 653
MfeI	CAATTG	1 cut(s)	837
MhlI	GDGCHC	1 cut(s)	781
MluCI	AATT	5 cut(s)	285, 772, 812, 837, 1008
Mly113I	GGCGCC	1 cut(s)	249
MlyI	GAGTC	2 cut(s)	197, 338
MmeI	TCCRAC	2 cut(s)	31, 231
MroI	TCCGGA	1 cut(s)	571
MroNI	GCCGGC	1 cut(s)	245
MroXI	GAANNNNTTC	2 cut(s)	530, 648
MseI	TTAA	1 cut(s)	824
MslI	CAYNNNNRTG	1 cut(s)	653
MspI	CCGG	5 cut(s)	246, 290, 406, 572, 982
MspR9I	CCNGG	3 cut(s)	278, 291, 406
MunI	CAATTG	1 cut(s)	837
Mva1269I	GAATGC	4 cut(s)	103, 700, 728, 932
MvaI	CCWGG	1 cut(s)	278
MvnI	CGCG	1 cut(s)	948
MwoI	GCNNNNNNNGC	4 cut(s)	189, 365, 434, 467
NaeI	GCCGGC	1 cut(s)	247
NarI	GGCGCC	1 cut(s)	249
NciI	CCSGG	2 cut(s)	291, 406
NdeI	CATATG	1 cut(s)	654
NgoMIV	GCCGGC	1 cut(s)	245
NlaIV	GGNNCC	2 cut(s)	224, 250
NmuCI	GTSAC	2 cut(s)	262, 349
NspV	TTCGAA	1 cut(s)	924
PaeR7I	CTCGAG	1 cut(s)	143
PceI	AGGCCT	1 cut(s)	620
PcsI	WCGNNNNNNNCGW	1 cut(s)	915
PctI	GAATGC	4 cut(s)	103, 700, 728, 932
PdiI	GCCGGC	1 cut(s)	247
PdmI	GAANNNNTTC	2 cut(s)	530, 648
PfeI	GAWTC	1 cut(s)	950
PfoI	TCCNGGA	1 cut(s)	289
PkrI	GCNGC	5 cut(s)	160, 439, 542, 633, 894
PleI	GAGTC	2 cut(s)	197, 337
PluTI	GGCGCC	1 cut(s)	252
PpsI	GAGTC	2 cut(s)	197, 337
Psp6I	CCWGG	1 cut(s)	276
PspGI	CCWGG	1 cut(s)	276
PspN4I	GGNNCC	2 cut(s)	224, 250
PspPI	GGNCC	3 cut(s)	223, 500, 569
RsaI	GTAC	1 cut(s)	848
RsaNI	GTAC	1 cut(s)	847
RseI	CAYNNNNRTG	1 cut(s)	653
SaqAI	TTAA	1 cut(s)	824
SatI	GCNGC	5 cut(s)	159, 438, 541, 632, 893
Sau96I	GGNCC	3 cut(s)	223, 500, 569
SchI	GAGTC	2 cut(s)	197, 338
ScrFI	CCNGG	3 cut(s)	278, 291, 406
SduI	GDGCHC	1 cut(s)	781
SfaNI	GCATC	1 cut(s)	418
SfcI	CTRYAG	1 cut(s)	681
SfoI	GGCGCC	1 cut(s)	250
Sfr274I	CTCGAG	1 cut(s)	143
SfuI	TTCGAA	1 cut(s)	924
SinI	GGWCC	3 cut(s)	223, 500, 569
SlaI	CTCGAG	1 cut(s)	143
SmiMI	CAYNNNNRTG	1 cut(s)	653
SmlI	CTYRAG	1 cut(s)	143
SmoI	CTYRAG	1 cut(s)	143
Sse9I	AATT	5 cut(s)	285, 772, 812, 837, 1008
SseBI	AGGCCT	1 cut(s)	620
SsiI	CCGC	3 cut(s)	437, 538, 541
SspDI	GGCGCC	1 cut(s)	248
StuI	AGGCCT	1 cut(s)	620
StyD4I	CCNGG	3 cut(s)	276, 289, 404
StyI	CCWWGG	2 cut(s)	78, 303
TaaI	ACNGT	2 cut(s)	312, 488
TaiI	ACGT	1 cut(s)	356
TaqI	TCGA	5 cut(s)	144, 318, 363, 909, 924
TasI	AATT	5 cut(s)	285, 772, 812, 837, 1008
TauI	GCSGC	2 cut(s)	440, 543
TfiI	GAWTC	1 cut(s)	950
Tru1I	TTAA	1 cut(s)	824
Tru9I	TTAA	1 cut(s)	824
TscAI	CASTG	3 cut(s)	396, 493, 768
TseFI	GTSAC	2 cut(s)	262, 349
TseI	GCWGC	3 cut(s)	158, 631, 892
Tsp45I	GTSAC	2 cut(s)	262, 349
TspDTI	ATGAA	2 cut(s)	258, 641
TspGWI	ACGGA	2 cut(s)	24, 138
TspRI	CASTG	3 cut(s)	396, 493, 768
VneI	GTGCAC	1 cut(s)	777
VpaK11BI	GGWCC	3 cut(s)	223, 500, 569
XagI	CCTNNNNNAGG	1 cut(s)	197
XhoI	CTCGAG	1 cut(s)	143
XmnI	GAANNNNTTC	2 cut(s)	530, 648

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.