Rh4DG432500

Protein NRT1 PTR FAMILY

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
Physical Location & Seq
Forward (+)
63643964 .. 63646957
2994 bp
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UTR
Exon/CDS
Intron
Rh4DG432500.1

Sequence Viewer

Length: 1755 bp
ATGAGTTCTCATGAGGATGAAAGAGCTCTTTTAGAAGATAAGCTTTTGCAGAATGAAGGCAGTGGACTCTACACTGGAGACAGTTCAGTTGACAGAAAGGGGAAGCCTGCGCTTAAAAAGAAGACTGGCCAGTGGAAAGCATGCTCCTTCGTTCTTGGTACCTTTTTTTGTGAACGATTGGCCTTCTATGGGATTTCTACCAATCTTGTCAATTATCTTCTTGACACACTACATGAAGGAACTGTCGATGCTGCAACAGCTATTACCAATTGGAAAGGAACTTGCTATCTTACACCTCTCATTGGGGCCATCATAGCTGATACTTACTGGGGAAGATATTGGACAATTGCCAGTTTCACCATAGTCTATTTGATTGGAATGGGTACACTGACTCTTTCAGCATCAGTTCCTGCACTAGAGCCTGCAGCATGTGTCGATTCTGTATGCCCCGAAGCTACTACTGCACAATATGCTATATTCATCACTGGACTATATCTGATTGCATTAGGGACTGGAGGCATCAAACCTTGCATATGGCCTTTTGGGGCGGATCAGTTTGATGATTCCGATCCCCAGGAAAGGGTGAAGAAGGGATCCTATTTCAACTGGTTTTACTTTTCTCAAAACATTGGTGCTATTATAGCAAGCAGTTTACTGGTGTGGATTCAGGACAATGTTGGGTGGGGAATTGGATTTGGAATTCCTACTGCGGTTATGGGAGTTTGCATTGCAAGTTTATTTTTAGGTACTTCTCTGTATCGATTTCAGAAACCAGGCGGAAGTCCTCTTACAAGAATATGCCAGGTTTTAGTTGCATCATTCCATAAAAGAAATTTGAAGGTGCCTGAGGACAGCAGTCTCCTTTATGAAACACAAGACATAAGCTCTGCCATTAAAGGGAGTCGTAAACTGGAGCACAGCAATGAACTGAGGTGCCTTGATAAAGCTGCTTTGGTATCTGATGCTGAGATTGAACGTGGGGACTTTTCAAATCCATGGAGGCTTTGTACCGTTACACAAGTAGAGGAACTGAAGATTTTGATCCGCATGTTTCCAATCTGGGCAACAGGAATTGTGTTTTCTGCCGTTTATGCCCAAATGTCTACATTGTTTGTGGTACAAGGCAAGCTGATGGACAGAGTTGTTGGCTCTGTCACCATTCCTGCAGCATCTCTTTCATTTTTCAATTTTGTAAGTGTTATTATCTGGGTCCCTATCTATGATACAATAATCATTCCAATAGTCAAGAAGTATACAGGCAAGGAGAGGGGTTTCTCACAGTTGGAACGTATGGGAATCGGGCTCTTTGTGTCGATTCTATGTATGTCAGCTGCTGCAGTGGTAGAGATTAAGCGATTGCAGCTTGTCAGGGAGCTTGGATTGGTTGATGATGAGGTTGCTGTACCGCTTAGTATACTTTGGCAAATTCCACAATATTTTTTGTTGGGTGCTGCTGAGGTTTTCACCTTCATTGGGCAGCATGAGTTCTTCTATGAGCAAGCGCCGGACGCTATGAGGAGTTTGTGCAGCGCATTGTCTCTTTTGACAAATTCATTGGGGAGTTACCTCAGCTCTCTTATTCTGACAATTGTGACTTCTATCACAACACAGGGTGGGAGTCCGGGATGGATTCCAGACAACTTGAACGAGGGCCATCTTGATTATTTCTACTGGCTTTTGGCTGGACTCAGCCTCCTAAATTTGTTGGTGTACATGGTCTTTTCCAGAAGGTATAAGGAGAAGAAGGTTGCTTAA

Protein Analysis

584

Amino Acids

64.53

Weight (kDa)

5.82

Isoelectric Point (pI)

26.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_1 PF07690 53 - 523 2.2e-06 Major Facilitator Superfamily
PTR2 PF00854 113 - 544 2.4e-121 POT family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 158
AccB1I GGYRCC 3 cut(s) 158, 841, 933
AccI GTMKAC 3 cut(s) 1103, 1253, 1414
AciI CCGC 5 cut(s) 548, 710, 777, 1045, 1406
AclWI GGATC 5 cut(s) 558, 563, 588, 601, 1036
AcoI YGGCCR 1 cut(s) 127
AcsI RAATTY 5 cut(s) 699, 832, 1425, 1549, 1699
AcuI CTGAAG 1 cut(s) 1052
AdeI CACNNNGTG 1 cut(s) 1613
AfaI GTAC 7 cut(s) 160, 385, 748, 1009, 1119, 1404, 1712
AfiI CCNNNNNNNGG 6 cut(s) 189, 302, 579, 580, 897, 1473
AgsI TTSAA 6 cut(s) 604, 838, 974, 990, 1186, 1645
AjnI CCWGG 3 cut(s) 573, 772, 801
Alw21I GWGCWC 2 cut(s) 28, 918
Alw26I GTCTC 3 cut(s) 72, 863, 1542
AlwI GGATC 5 cut(s) 558, 563, 588, 601, 1036
AlwNI CAGNNNCTG 2 cut(s) 410, 1334
AoxI GGCC 5 cut(s) 127, 180, 306, 536, 1651
ApoI RAATTY 5 cut(s) 699, 832, 1425, 1549, 1699
Asp718I GGTACC 1 cut(s) 158
AspLEI GCGC 3 cut(s) 112, 1504, 1532
AspS9I GGNCC 3 cut(s) 306, 1210, 1651
AsuC2I CCSGG 1 cut(s) 1623
AsuHPI GGTGA 4 cut(s) 349, 595, 1147, 1456
AvaII GGWCC 1 cut(s) 1210
AxyI CCTNAGG 1 cut(s) 846
BalI TGGCCA 1 cut(s) 129
BamHI GGATCC 1 cut(s) 593
BanI GGYRCC 3 cut(s) 158, 841, 933
BanII GRGCYC 2 cut(s) 28, 1305
BarI GAAGNNNNNNTAC 2 cut(s) 772, 804
BbsI GAAGAC 1 cut(s) 128
Bbv12I GWGCWC 2 cut(s) 28, 918
BbvCI CCTCAGC 2 cut(s) 1455, 1568
BccI CCATC 4 cut(s) 317, 1126, 1620, 1662
BceAI ACGGC 1 cut(s) 1070
BciT130I CCWGG 3 cut(s) 575, 774, 803
BcnI CCSGG 1 cut(s) 1623
BcoDI GTCTC 3 cut(s) 72, 863, 1542
BfaI CTAG 1 cut(s) 416
BfmI CTRYAG 3 cut(s) 423, 1164, 1335
BfoI RGCGCY 1 cut(s) 1505
Bme1390I CCNGG 4 cut(s) 575, 774, 803, 1623
Bme18I GGWCC 1 cut(s) 1210
BmgT120I GGNCC 3 cut(s) 306, 1210, 1651
BmiI GGNNCC 7 cut(s) 160, 307, 595, 843, 935, 1211, 1212
BmrFI CCNGG 4 cut(s) 575, 774, 803, 1623
BmrI ACTGGG 1 cut(s) 337
BmsI GCATC 6 cut(s) 238, 410, 528, 824, 952, 1178
BmuI ACTGGG 1 cut(s) 337
BoxI GACNNNNGTC 1 cut(s) 855
BpiI GAAGAC 1 cut(s) 128
BpmI CTGGAG 3 cut(s) 96, 534, 932
Bpu10I CCTNAGC 2 cut(s) 1455, 1568
BpuMI CCSGG 1 cut(s) 1623
Bsa29I ATCGAT 1 cut(s) 760
BsaBI GATNNNNATC 2 cut(s) 567, 1040
BsaJI CCNNGG 2 cut(s) 573, 995
BsaXI ACNNNNNCTCC 4 cut(s) 991, 1021, 1677, 1707
Bsc4I CCNNNNNNNGG 6 cut(s) 189, 302, 579, 580, 897, 1473
Bse21I CCTNAGG 1 cut(s) 846
Bse3DI GCAATG 2 cut(s) 726, 928
Bse8I GATNNNNATC 2 cut(s) 567, 1040
BseBI CCWGG 3 cut(s) 575, 774, 803
BseCI ATCGAT 1 cut(s) 760
BseDI CCNNGG 2 cut(s) 573, 995
BseGI GGATG 2 cut(s) 22, 1631
BseJI GATNNNNATC 2 cut(s) 567, 1040
BseLI CCNNNNNNNGG 6 cut(s) 189, 302, 579, 580, 897, 1473
BseMI GCAATG 2 cut(s) 726, 928
BseMII CTCAG 6 cut(s) 837, 920, 957, 1446, 1582, 1702
BseRI GAGGAG 1 cut(s) 1531
BsgI GTGCAG 3 cut(s) 396, 447, 1546
BshFI GGCC 5 cut(s) 129, 182, 308, 538, 1653
BshNI GGYRCC 3 cut(s) 158, 841, 933
BshVI ATCGAT 1 cut(s) 760
BsiHKAI GWGCWC 2 cut(s) 28, 918
BsiSI CCGG 2 cut(s) 1505, 1622
BslFI GGGAC 3 cut(s) 523, 995, 1196
BslI CCNNNNNNNGG 6 cut(s) 189, 302, 579, 580, 897, 1473
BsmAI GTCTC 3 cut(s) 72, 863, 1542
BsmFI GGGAC 3 cut(s) 523, 995, 1196
BsnI GGCC 5 cut(s) 129, 182, 308, 538, 1653
Bsp1286I GDGCHC 3 cut(s) 28, 918, 1305
Bsp1407I TGTACA 1 cut(s) 1710
Bsp143I GATC 4 cut(s) 550, 568, 593, 1041
Bsp19I CCATGG 1 cut(s) 995
BspACI CCGC 5 cut(s) 548, 710, 777, 1045, 1406
BspANI GGCC 5 cut(s) 129, 182, 308, 538, 1653
BspCNI CTCAG 6 cut(s) 838, 921, 958, 1447, 1581, 1701
BspDI ATCGAT 1 cut(s) 760
BspHI TCATGA 1 cut(s) 10
BspLI GGNNCC 7 cut(s) 160, 307, 595, 843, 935, 1211, 1212
BspMAI CTGCAG 3 cut(s) 427, 1168, 1339
BspPI GGATC 5 cut(s) 558, 563, 588, 601, 1036
BspT107I GGYRCC 3 cut(s) 158, 841, 933
BsrDI GCAATG 2 cut(s) 726, 928
BsrGI TGTACA 1 cut(s) 1710
BssECI CCNNGG 2 cut(s) 573, 995
BssMI GATC 4 cut(s) 550, 568, 593, 1041
BssNAI GTATAC 2 cut(s) 1254, 1415
BssT1I CCWWGG 1 cut(s) 995
Bst1107I GTATAC 2 cut(s) 1254, 1415
Bst2UI CCWGG 3 cut(s) 575, 774, 803
Bst4CI ACNGT 4 cut(s) 83, 244, 1012, 1281
BstAPI GCANNNNNTGC 1 cut(s) 470
BstAUI TGTACA 1 cut(s) 1710
BstC8I GCNNGC 6 cut(s) 108, 142, 423, 646, 1127, 1500
BstDEI CTNAG 7 cut(s) 846, 929, 966, 1409, 1455, 1568, 1688
BstDSI CCRYGG 1 cut(s) 995
BstF5I GGATG 2 cut(s) 22, 1631
BstH2I RGCGCY 1 cut(s) 1505
BstHHI GCGC 3 cut(s) 112, 1504, 1532
BstKTI GATC 4 cut(s) 553, 571, 596, 1044
BstMAI GTCTC 3 cut(s) 72, 863, 1542
BstMBI GATC 4 cut(s) 550, 568, 593, 1041
BstMWI GCNNNNNNNGC 8 cut(s) 257, 314, 461, 470, 641, 1091, 1360, 1508
BstNI CCWGG 3 cut(s) 575, 774, 803
BstNSI RCATGY 3 cut(s) 144, 432, 1051
BstPAI GACNNNNGTC 1 cut(s) 855
BstSCI CCNGG 4 cut(s) 573, 772, 801, 1621
BstSFI CTRYAG 3 cut(s) 423, 1164, 1335
BstV2I GAAGAC 1 cut(s) 128
BstX2I RGATCY 1 cut(s) 593
BstYI RGATCY 1 cut(s) 593
BstZ17I GTATAC 2 cut(s) 1254, 1415
Bsu15I ATCGAT 1 cut(s) 760
Bsu36I CCTNAGG 1 cut(s) 846
BsuRI GGCC 5 cut(s) 129, 182, 308, 538, 1653
BsuTUI ATCGAT 1 cut(s) 760
BtgI CCRYGG 1 cut(s) 995
BtsCI GGATG 2 cut(s) 22, 1631
BtsI GCAGTG 2 cut(s) 67, 1344
BtsIMutI CAGTG 6 cut(s) 67, 72, 137, 386, 483, 1344
Cac8I GCNNGC 6 cut(s) 108, 142, 423, 646, 1127, 1500
CaiI CAGNNNCTG 2 cut(s) 410, 1334
CciI TCATGA 1 cut(s) 10
CfoI GCGC 3 cut(s) 112, 1504, 1532
Cfr13I GGNCC 3 cut(s) 306, 1210, 1651
ClaI ATCGAT 1 cut(s) 760
CseI GACGC 1 cut(s) 1517
Csp6I GTAC 7 cut(s) 159, 384, 747, 1008, 1118, 1403, 1711
CviAII CATG 8 cut(s) 11, 141, 233, 429, 996, 1048, 1481, 1714
CviQI GTAC 7 cut(s) 159, 384, 747, 1008, 1118, 1403, 1711
DdeI CTNAG 7 cut(s) 846, 929, 966, 1409, 1455, 1568, 1688
DpnI GATC 4 cut(s) 552, 570, 595, 1043
DpnII GATC 4 cut(s) 550, 568, 593, 1041
DraIII CACNNNGTG 1 cut(s) 1613
EaeI YGGCCR 1 cut(s) 127
EciI GGCGGA 2 cut(s) 563, 792
Ecl136II GAGCTC 1 cut(s) 26
Eco130I CCWWGG 1 cut(s) 995
Eco24I GRGCYC 2 cut(s) 28, 1305
Eco47I GGWCC 1 cut(s) 1210
Eco53kI GAGCTC 1 cut(s) 26
Eco57I CTGAAG 1 cut(s) 1052
Eco81I CCTNAGG 1 cut(s) 846
EcoICRI GAGCTC 1 cut(s) 26
EcoO109I RGGNCCY 1 cut(s) 1210
EcoRI GAATTC 1 cut(s) 699
EcoRII CCWGG 3 cut(s) 573, 772, 801
EcoT14I CCWWGG 1 cut(s) 995
EcoT38I GRGCYC 2 cut(s) 28, 1305
ErhI CCWWGG 1 cut(s) 995
FaeI CATG 8 cut(s) 14, 144, 236, 432, 999, 1051, 1484, 1717
FalI AAGNNNNNCTT 2 cut(s) 27, 59
FaqI GGGAC 3 cut(s) 523, 995, 1196
FatI CATG 8 cut(s) 10, 140, 232, 428, 995, 1047, 1480, 1713
FauNDI CATATG 1 cut(s) 533
FblI GTMKAC 3 cut(s) 1103, 1253, 1414
FokI GGATG 2 cut(s) 29, 1638
FriOI GRGCYC 2 cut(s) 28, 1305
FspBI CTAG 1 cut(s) 416
GlaI GCGC 3 cut(s) 111, 1503, 1531
GsuI CTGGAG 3 cut(s) 96, 534, 932
HaeII RGCGCY 1 cut(s) 1505
HaeIII GGCC 5 cut(s) 129, 182, 308, 538, 1653
HapII CCGG 2 cut(s) 1505, 1622
HgaI GACGC 1 cut(s) 1517
HhaI GCGC 3 cut(s) 112, 1504, 1532
Hin1II CATG 8 cut(s) 14, 144, 236, 432, 999, 1051, 1484, 1717
Hin6I GCGC 3 cut(s) 110, 1502, 1530
HinP1I GCGC 3 cut(s) 110, 1502, 1530
HincII GTYRAC 1 cut(s) 91
HindII GTYRAC 1 cut(s) 91
HindIII AAGCTT 1 cut(s) 41
HpaII CCGG 2 cut(s) 1505, 1622
HphI GGTGA 4 cut(s) 349, 595, 1147, 1456
Hpy188I TCNGA 5 cut(s) 498, 568, 768, 961, 1584
Hpy188III TCNNGA 7 cut(s) 11, 221, 668, 1246, 1634, 1658, 1725
HpyAV CCTTC 9 cut(s) 50, 157, 193, 230, 583, 832, 1477, 1722, 1738
HpyCH4III ACNGT 4 cut(s) 83, 244, 1012, 1281
HpyCH4IV ACGT 2 cut(s) 976, 1288
HpyF10VI GCNNNNNNNGC 8 cut(s) 257, 314, 461, 470, 641, 1091, 1360, 1508
HpyF3I CTNAG 7 cut(s) 846, 929, 966, 1409, 1455, 1568, 1688
HpySE526I ACGT 2 cut(s) 976, 1288
Hsp92II CATG 8 cut(s) 14, 144, 236, 432, 999, 1051, 1484, 1717
HspAI GCGC 3 cut(s) 110, 1502, 1530
KflI GGGWCCC 1 cut(s) 1210
KpnI GGTACC 1 cut(s) 162
Kzo9I GATC 4 cut(s) 550, 568, 593, 1041
LmnI GCTCC 3 cut(s) 149, 913, 1372
LweI GCATC 6 cut(s) 238, 410, 528, 824, 952, 1178
MaeI CTAG 1 cut(s) 416
MaeII ACGT 2 cut(s) 976, 1288
MaeIII GTNAC 4 cut(s) 1012, 1153, 1562, 1591
MalI GATC 4 cut(s) 552, 570, 595, 1043
MboI GATC 4 cut(s) 550, 568, 593, 1041
MboII GAAGA 8 cut(s) 47, 133, 209, 345, 598, 1045, 1480, 1753
MfeI CAATTG 3 cut(s) 268, 345, 1587
MflI RGATCY 1 cut(s) 593
MhlI GDGCHC 3 cut(s) 28, 918, 1305
MlsI TGGCCA 1 cut(s) 129
MluNI TGGCCA 1 cut(s) 129
MlyI GAGTC 5 cut(s) 60, 385, 910, 1627, 1680
MmeI TCCRAC 1 cut(s) 1263
Mox20I TGGCCA 1 cut(s) 129
MscI TGGCCA 1 cut(s) 129
MseI TTAA 4 cut(s) 114, 894, 1350, 1753
MslI CAYNNNNRTG 2 cut(s) 15, 921
Msp20I TGGCCA 1 cut(s) 129
MspA1I CMGCKG 1 cut(s) 1331
MspI CCGG 2 cut(s) 1505, 1622
MspR9I CCNGG 4 cut(s) 575, 774, 803, 1623
MunI CAATTG 3 cut(s) 268, 345, 1587
MvaI CCWGG 3 cut(s) 575, 774, 803
MwoI GCNNNNNNNGC 8 cut(s) 257, 314, 461, 470, 641, 1091, 1360, 1508
NciI CCSGG 1 cut(s) 1623
NcoI CCATGG 1 cut(s) 995
NdeI CATATG 1 cut(s) 533
NdeII GATC 4 cut(s) 550, 568, 593, 1041
NlaIII CATG 8 cut(s) 14, 144, 236, 432, 999, 1051, 1484, 1717
NlaIV GGNNCC 7 cut(s) 160, 307, 595, 843, 935, 1211, 1212
NmuCI GTSAC 2 cut(s) 1153, 1591
NspI RCATGY 3 cut(s) 144, 432, 1051
PaeI GCATGC 1 cut(s) 144
PagI TCATGA 1 cut(s) 10
PfeI GAWTC 6 cut(s) 437, 563, 664, 1296, 1315, 1630
PfoI TCCNGGA 1 cut(s) 1621
PleI GAGTC 5 cut(s) 60, 385, 909, 1626, 1680
PpsI GAGTC 5 cut(s) 60, 385, 909, 1626, 1680
PpuMI RGGWCCY 1 cut(s) 1210
PshAI GACNNNNGTC 1 cut(s) 855
Psp124BI GAGCTC 1 cut(s) 28
Psp5II RGGWCCY 1 cut(s) 1210
Psp6I CCWGG 3 cut(s) 573, 772, 801
PspGI CCWGG 3 cut(s) 573, 772, 801
PspN4I GGNNCC 7 cut(s) 160, 307, 595, 843, 935, 1211, 1212
PspPI GGNCC 3 cut(s) 306, 1210, 1651
PspPPI RGGWCCY 1 cut(s) 1210
PstI CTGCAG 3 cut(s) 427, 1168, 1339
PstNI CAGNNNCTG 2 cut(s) 410, 1334
PsuI RGATCY 1 cut(s) 593
PvuII CAGCTG 1 cut(s) 1331
RsaI GTAC 7 cut(s) 160, 385, 748, 1009, 1119, 1404, 1712
RsaNI GTAC 7 cut(s) 159, 384, 747, 1008, 1118, 1403, 1711
RseI CAYNNNNRTG 2 cut(s) 15, 921
SacI GAGCTC 1 cut(s) 28
SaqAI TTAA 4 cut(s) 114, 894, 1350, 1753
Sau3AI GATC 4 cut(s) 550, 568, 593, 1041
Sau96I GGNCC 3 cut(s) 306, 1210, 1651
SchI GAGTC 5 cut(s) 60, 385, 910, 1627, 1680
ScrFI CCNGG 4 cut(s) 575, 774, 803, 1623
SduI GDGCHC 3 cut(s) 28, 918, 1305
SfaNI GCATC 6 cut(s) 238, 410, 528, 824, 952, 1178
SfcI CTRYAG 3 cut(s) 423, 1164, 1335
SinI GGWCC 1 cut(s) 1210
SmiMI CAYNNNNRTG 2 cut(s) 15, 921
SphI GCATGC 1 cut(s) 144
SsiI CCGC 5 cut(s) 548, 710, 777, 1045, 1406
SspI AATATT 1 cut(s) 1436
SspMI CTAG 1 cut(s) 416
SstI GAGCTC 1 cut(s) 28
StyD4I CCNGG 4 cut(s) 573, 772, 801, 1621
StyI CCWWGG 1 cut(s) 995
TaaI ACNGT 4 cut(s) 83, 244, 1012, 1281
TaiI ACGT 2 cut(s) 979, 1291
TaqI TCGA 4 cut(s) 246, 435, 760, 1313
TatI WGTACW 1 cut(s) 1710
TfiI GAWTC 6 cut(s) 437, 563, 664, 1296, 1315, 1630
Tru1I TTAA 4 cut(s) 114, 894, 1350, 1753
Tru9I TTAA 4 cut(s) 114, 894, 1350, 1753
TscAI CASTG 6 cut(s) 67, 79, 137, 393, 490, 1344
TseFI GTSAC 2 cut(s) 1153, 1591
Tsp45I GTSAC 2 cut(s) 1153, 1591
TspDTI ATGAA 9 cut(s) 33, 69, 249, 469, 882, 939, 1167, 1459, 1542
TspRI CASTG 6 cut(s) 67, 79, 137, 393, 490, 1344
VpaK11BI GGWCC 1 cut(s) 1210
XapI RAATTY 5 cut(s) 699, 832, 1425, 1549, 1699
XceI RCATGY 3 cut(s) 144, 432, 1051
XmiI GTMKAC 3 cut(s) 1103, 1253, 1414
XspI CTAG 1 cut(s) 416
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.