AT1G62500
ERF Family

Bifunctional inhibitor lipid-transfer protein seed storage 2S albumin superfamily protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
23131928 .. 23133507
1580 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G62500.1

Sequence Viewer

Length: 894 bp
ATGGGTTCGAGAGTTTTGGCTTCCTTCTTTGTTTTCTTAATCTTCACGGTCATCACATTGCCTCCCACGATCCAAGCTTGCACTCCTTGTACTCGTCCTCATCCTCCGGTTCCGAAACCTCCACAACACGGCGGTGGTGGAGGTGGTGGTAGCAAGCCGCCTCCACATCACGGTGGAAAAGGTGGTGGTAAACCCCCACCCCACGGTGGAAAAGGTGGAGGACCGCCGCATCATGGTGGAGGAGGAGGAGGAGGAGGGAAATCACCGCCGGTTGTTAGACCTCCTCCCGTAGTGGTGAGGCCACCGCCAATCATAAGACCTCCTCCGGTCGTCTATCCACCACCAATTGTGAGGCCACCGCCAATCACAAGACCTCCCATCATAATCCCTCCAATTCAACCACCGCCGGTTACAACTCCTCCGGGACTCCTCCCTCCGATCACAACTCCTCCGGGACTCCTCCCTCCAGTCACAACTCCTCCGGGACTTCTCCCTCCAGTCACAACTCCTCCAGGACTTCTCCCTCCAATCATTAACCCACCTCCGGTCACAGTCCCACCACCATCGTCCGGCTATCCACCATATGGTCCACCTTCCGGTGGAGGAGGAGGAGGCGGCGGCAAACAACCAACGTGTCCGATCAATGCATTGAAGCTTGGAGCCTGTGTTGATGTTTTGGGAGGATTGATCCATATAGGACTTGGAAATCCGGTGGAGAATGTGTGTTGTCCAGTGTTACAAGGGTTACTTGAGCTAGAAGCAGCCGTTTGTCTTTGCACAACCATAAGACTTAAGCTTCTCAACTTAAACATCTTCATTCCTCTTGCACTTCAAGCTCTTATCACTTGTGGGATCAATCCTCCTTCTGGTTTTGTCTGCCCTCCTCTCACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

297

Amino Acids

29.68

Weight (kDa)

9.66

Isoelectric Point (pI)

74.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hydrophob_seed PF14547 211 - 294 2e-25 Hydrophobic seed protein
Tryp_alpha_amyl PF00234 212 - 293 2.8e-11 Protease inhibitor/seed storage/LTP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015789)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G62500
fragaria_vesca FvH4_5g00120
malus_domestica MD04G1087700.v1.1
prunus_persica Prupe.5G073000_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0202811
rosa_laevigata RLG00000003570
rosa_multiflora Rmu_sc0002590.1_g000023 Rmu_sc0003429.1_g000016
rosa_roxburghii Rroxscaffold_3G00254240
rosa_rugosa Rorug07G0073200
rosa_samantha Rh7AG201000 Rh7BG201200 Rh7CG212400 Rh7DG207900
rosa_wichuraiana Rw7G017580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 584
AclWI GGATC 3 cut(s) 64, 682, 860
AfaI GTAC 1 cut(s) 91
AflII CTTAAG 1 cut(s) 791
AflIII ACRYGT 1 cut(s) 632
AgsI TTSAA 3 cut(s) 398, 652, 833
AjnI CCWGG 1 cut(s) 511
AleI CACNNNNGTG 1 cut(s) 132
AluBI AGCT 5 cut(s) 77, 655, 754, 796, 836
AluI AGCT 5 cut(s) 77, 655, 754, 796, 836
AlwI GGATC 3 cut(s) 64, 682, 860
AoxI GGCC 2 cut(s) 299, 353
ApeKI GCWGC 1 cut(s) 761
AspS9I GGNCC 2 cut(s) 221, 587
AsuC2I CCSGG 3 cut(s) 423, 453, 483
AsuHPI GGTGA 2 cut(s) 255, 307
AvaII GGWCC 2 cut(s) 221, 587
BbvI GCAGC 1 cut(s) 773
BccI CCATC 2 cut(s) 386, 571
BceAI ACGGC 2 cut(s) 145, 749
BciT130I CCWGG 1 cut(s) 513
BcnI CCSGG 3 cut(s) 423, 453, 483
BfaI CTAG 1 cut(s) 755
BfrI CTTAAG 1 cut(s) 791
BisI GCNGC 5 cut(s) 158, 227, 616, 619, 762
BlsI GCNGC 5 cut(s) 159, 228, 617, 620, 763
Bme1390I CCNGG 4 cut(s) 423, 453, 483, 513
Bme18I GGWCC 2 cut(s) 221, 587
BmgT120I GGNCC 2 cut(s) 221, 587
BmiI GGNNCC 2 cut(s) 111, 661
BmrFI CCNGG 4 cut(s) 423, 453, 483, 513
BmsI GCATC 1 cut(s) 238
BpmI CTGGAG 3 cut(s) 450, 480, 495
BpuEI CTTGAG 1 cut(s) 770
BpuMI CCSGG 3 cut(s) 423, 453, 483
BsaJI CCNNGG 1 cut(s) 202
BsaWI WCCGGW 5 cut(s) 106, 325, 544, 596, 709
Bse118I RCCGGY 2 cut(s) 268, 406
Bse1I ACTGG 3 cut(s) 467, 497, 731
Bse3DI GCAATG 1 cut(s) 56
BseBI CCWGG 1 cut(s) 513
BseDI CCNNGG 1 cut(s) 202
BseGI GGATG 1 cut(s) 100
BseMI GCAATG 1 cut(s) 56
BseNI ACTGG 3 cut(s) 467, 497, 731
BseXI GCAGC 1 cut(s) 773
Bsh1285I CGRYCG 1 cut(s) 330
BshFI GGCC 2 cut(s) 301, 355
BsiEI CGRYCG 1 cut(s) 330
BslFI GGGAC 4 cut(s) 438, 468, 498, 539
BsmFI GGGAC 4 cut(s) 438, 468, 498, 539
BsnI GGCC 2 cut(s) 301, 355
Bsp143I GATC 5 cut(s) 69, 438, 639, 687, 852
BspANI GGCC 2 cut(s) 301, 355
BspLI GGNNCC 2 cut(s) 111, 661
BspPI GGATC 3 cut(s) 64, 682, 860
BspTI CTTAAG 1 cut(s) 791
BsrDI GCAATG 1 cut(s) 56
BsrFI RCCGGY 2 cut(s) 268, 406
BsrI ACTGG 3 cut(s) 467, 497, 731
BssAI RCCGGY 2 cut(s) 268, 406
BssECI CCNNGG 1 cut(s) 202
BssMI GATC 5 cut(s) 69, 438, 639, 687, 852
Bst2UI CCWGG 1 cut(s) 513
Bst4CI ACNGT 4 cut(s) 49, 173, 206, 553
BstAFI CTTAAG 1 cut(s) 791
BstC8I GCNNGC 2 cut(s) 79, 155
BstDSI CCRYGG 1 cut(s) 202
BstF5I GGATG 1 cut(s) 100
BstKTI GATC 5 cut(s) 72, 441, 642, 690, 855
BstMBI GATC 5 cut(s) 69, 438, 639, 687, 852
BstMCI CGRYCG 1 cut(s) 330
BstMWI GCNNNNNNNGC 1 cut(s) 833
BstNI CCWGG 1 cut(s) 513
BstSCI CCNGG 4 cut(s) 421, 451, 481, 511
BstV1I GCAGC 1 cut(s) 773
BsuRI GGCC 2 cut(s) 301, 355
BtgI CCRYGG 1 cut(s) 202
BtsCI GGATG 1 cut(s) 100
BtsIMutI CAGTG 1 cut(s) 738
Cac8I GCNNGC 2 cut(s) 79, 155
Cfr10I RCCGGY 2 cut(s) 268, 406
Cfr13I GGNCC 2 cut(s) 221, 587
Csp6I GTAC 1 cut(s) 90
CviAII CATG 1 cut(s) 233
CviQI GTAC 1 cut(s) 90
DpnI GATC 5 cut(s) 71, 440, 641, 689, 854
DpnII GATC 5 cut(s) 69, 438, 639, 687, 852
Eco47I GGWCC 2 cut(s) 221, 587
EcoRII CCWGG 1 cut(s) 511
EcoT22I ATGCAT 1 cut(s) 649
FaeI CATG 1 cut(s) 236
FaiI YATR 8 cut(s) 234, 314, 383, 583, 585, 693, 695, 785
FalI AAGNNNNNCTT 2 cut(s) 732, 764
FaqI GGGAC 4 cut(s) 438, 468, 498, 539
FatI CATG 1 cut(s) 232
FauNDI CATATG 1 cut(s) 583
Fnu4HI GCNGC 5 cut(s) 158, 227, 616, 619, 762
FokI GGATG 1 cut(s) 87
Fsp4HI GCNGC 5 cut(s) 158, 227, 616, 619, 762
FspBI CTAG 1 cut(s) 755
GluI GCNGC 5 cut(s) 158, 227, 616, 619, 762
GsuI CTGGAG 3 cut(s) 450, 480, 495
HaeIII GGCC 2 cut(s) 301, 355
Hin1II CATG 1 cut(s) 236
HindIII AAGCTT 3 cut(s) 75, 653, 794
HinfI GANTC 2 cut(s) 426, 456
HphI GGTGA 2 cut(s) 255, 307
Hpy166II GTNNAC 2 cut(s) 191, 590
Hpy188I TCNGA 3 cut(s) 114, 438, 639
Hpy188III TCNNGA 1 cut(s) 9
Hpy8I GTNNAC 2 cut(s) 191, 590
HpyAV CCTTC 3 cut(s) 34, 603, 873
HpyCH4III ACNGT 4 cut(s) 49, 173, 206, 553
HpyCH4IV ACGT 1 cut(s) 632
HpyCH4V TGCA 4 cut(s) 81, 647, 777, 827
HpyF10VI GCNNNNNNNGC 1 cut(s) 833
HpySE526I ACGT 1 cut(s) 632
Hsp92II CATG 1 cut(s) 236
Kzo9I GATC 5 cut(s) 69, 438, 639, 687, 852
LmnI GCTCC 1 cut(s) 659
Lsp1109I GCAGC 1 cut(s) 773
LweI GCATC 1 cut(s) 238
MaeI CTAG 1 cut(s) 755
MaeII ACGT 1 cut(s) 632
MaeIII GTNAC 6 cut(s) 409, 469, 499, 547, 735, 744
MalI GATC 5 cut(s) 71, 440, 641, 689, 854
MboI GATC 5 cut(s) 69, 438, 639, 687, 852
MboII GAAGA 2 cut(s) 34, 805
MfeI CAATTG 1 cut(s) 345
MluCI AATT 2 cut(s) 345, 393
MlyI GAGTC 2 cut(s) 420, 450
Mph1103I ATGCAT 1 cut(s) 649
MseI TTAA 4 cut(s) 38, 534, 792, 806
MslI CAYNNNNRTG 3 cut(s) 132, 171, 234
MspCI CTTAAG 1 cut(s) 791
MspR9I CCNGG 4 cut(s) 423, 453, 483, 513
MunI CAATTG 1 cut(s) 345
MvaI CCWGG 1 cut(s) 513
MwoI GCNNNNNNNGC 1 cut(s) 833
NciI CCSGG 3 cut(s) 423, 453, 483
NdeI CATATG 1 cut(s) 583
NdeII GATC 5 cut(s) 69, 438, 639, 687, 852
NlaIII CATG 1 cut(s) 236
NlaIV GGNNCC 2 cut(s) 111, 661
NmuCI GTSAC 3 cut(s) 469, 499, 547
NsiI ATGCAT 1 cut(s) 649
OliI CACNNNNGTG 1 cut(s) 132
PflMI CCANNNNNTGG 1 cut(s) 584
PfoI TCCNGGA 4 cut(s) 421, 451, 481, 511
PkrI GCNGC 5 cut(s) 159, 228, 617, 620, 763
PleI GAGTC 2 cut(s) 420, 450
PpsI GAGTC 2 cut(s) 420, 450
Psp6I CCWGG 1 cut(s) 511
PspGI CCWGG 1 cut(s) 511
PspN4I GGNNCC 2 cut(s) 111, 661
PspPI GGNCC 2 cut(s) 221, 587
RsaI GTAC 1 cut(s) 91
RsaNI GTAC 1 cut(s) 90
RseI CAYNNNNRTG 3 cut(s) 132, 171, 234
SaqAI TTAA 4 cut(s) 38, 534, 792, 806
SatI GCNGC 5 cut(s) 158, 227, 616, 619, 762
Sau3AI GATC 5 cut(s) 69, 438, 639, 687, 852
Sau96I GGNCC 2 cut(s) 221, 587
SchI GAGTC 2 cut(s) 420, 450
ScrFI CCNGG 4 cut(s) 423, 453, 483, 513
SfaNI GCATC 1 cut(s) 238
SinI GGWCC 2 cut(s) 221, 587
SmiMI CAYNNNNRTG 3 cut(s) 132, 171, 234
SmlI CTYRAG 2 cut(s) 749, 791
SmoI CTYRAG 2 cut(s) 749, 791
Sse9I AATT 2 cut(s) 345, 393
SspMI CTAG 1 cut(s) 755
StyD4I CCNGG 4 cut(s) 421, 451, 481, 511
TaaI ACNGT 4 cut(s) 49, 173, 206, 553
TaiI ACGT 1 cut(s) 635
TaqI TCGA 1 cut(s) 8
TasI AATT 2 cut(s) 345, 393
TatI WGTACW 1 cut(s) 89
TauI GCSGC 4 cut(s) 160, 229, 618, 621
Tru1I TTAA 4 cut(s) 38, 534, 792, 806
Tru9I TTAA 4 cut(s) 38, 534, 792, 806
TscAI CASTG 1 cut(s) 738
TseFI GTSAC 3 cut(s) 469, 499, 547
TseI GCWGC 1 cut(s) 761
Tsp45I GTSAC 3 cut(s) 469, 499, 547
TspDTI ATGAA 1 cut(s) 805
TspRI CASTG 1 cut(s) 738
Van91I CCANNNNNTGG 1 cut(s) 584
Vha464I CTTAAG 1 cut(s) 791
VpaK11BI GGWCC 2 cut(s) 221, 587
XcmI CCANNNNNNNNNTGG 1 cut(s) 698
XspI CTAG 1 cut(s) 755
Zsp2I ATGCAT 1 cut(s) 649
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.