Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0015789

Physical Location & Seq

Genomic Coordinates Reverse (-)

18576084 .. 18577195

Gene Structure 1112 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G017580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGATGGGTTCAAAGTCTACTGCCGTGTTCTTCATCTTCTTGATTTGCATGGTAATTGCGTTGCCACCAATTCAAGCTTGTGCTCCTTGTACTCAGCCTCATCCACCAAAACCGCCTAAACATCATCCAGGCCATTCCAAAATTCCTCCCCACCCCAAACACCCACCACACCACCGAGGTGGAGGAGGAGGCGGCGGCGGCGGTGGCGGAGGAGGAGGAAAAGGAGGCGGCGGCAAAGGAGGTGGAGGTGGAATTGGTGGTCACCCAAAAGTTCCCCCCCCATCCAAAAACCCACCAGTTGTATCTCCACCAATAATAACACCCCCTATTACTAAACCTCCTGTGGCAATCCCACCTCCTTCCCCCTCGTACCCACCTTACATCCCTCCTCCAACGCCTCCTTGTGCTGGATGCGGTGGAGGAGGTGGCTCGGGTAAACATCCTCCGCCTTCTACTACACCAGCTACTTGTCCTATTGATGCGCTGAAGTTAGGGCTTTGTGTGGATGTGCTGGGTGGTTTGGTGCATATCGGGTTGGGGAATCCAGTTGAGAATGCTTGCTGTCCAGTGCTCCAAGGGTTGCTTGAGCTTGAAGCAGCGATTTGTCTTTGCACGGCCATAAGGCTTAAGCTGCTAAACCTAAACATCTTCATTCCTCTTGCTCTTCAAGCTTTGATCACTTGCGGCATAACTCCTCCTCCTGGTTTTGTATGTCCGCCTCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hydrophob_seed

Protein Analysis

241

Amino Acids

23.86

Weight (kDa)

9.11

Isoelectric Point (pI)

63.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrophob_seed	PF14547	156 - 239	2.8e-25	Hydrophobic seed protein
Tryp_alpha_amyl	PF00234	157 - 238	9.5e-12	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0015789)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62500
fragaria_vesca	FvH4_5g00120
malus_domestica	MD04G1087700.v1.1
prunus_persica	Prupe.5G073000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0202811
rosa_laevigata	RLG00000003570
rosa_multiflora	Rmu_sc0002590.1_g000023 Rmu_sc0003429.1_g000016
rosa_roxburghii	Rroxscaffold_3G00254240
rosa_rugosa	Rorug07G0073200
rosa_samantha	Rh7AG201000 Rh7BG201200 Rh7CG212400 Rh7DG207900
rosa_wichuraiana	Rw7G017580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	17
AcoI	YGGCCR	1 cut(s)	615
AcsI	RAATTY	1 cut(s)	141
AcuI	CTGAAG	1 cut(s)	506
AfaI	GTAC	2 cut(s)	91, 371
AfiI	CCNNNNNNNGG	2 cut(s)	407, 701
AflII	CTTAAG	1 cut(s)	626
AgsI	TTSAA	4 cut(s)	12, 74, 593, 668
AjnI	CCWGG	2 cut(s)	127, 700
AleI	CACNNNNGTG	1 cut(s)	177
AluBI	AGCT	5 cut(s)	77, 464, 589, 631, 671
AluI	AGCT	5 cut(s)	77, 464, 589, 631, 671
Alw21I	GWGCWC	2 cut(s)	85, 573
Ama87I	CYCGRG	1 cut(s)	430
AoxI	GGCC	2 cut(s)	130, 615
ApeKI	GCWGC	2 cut(s)	596, 631
ApoI	RAATTY	1 cut(s)	141
AspLEI	GCGC	1 cut(s)	484
AsuHPI	GGTGA	1 cut(s)	254
AvaI	CYCGRG	1 cut(s)	430
Bbv12I	GWGCWC	2 cut(s)	85, 573
BbvI	GCAGC	2 cut(s)	608, 618
BccI	CCATC	1 cut(s)	289
BceAI	ACGGC	2 cut(s)	8, 630
BciT130I	CCWGG	2 cut(s)	129, 702
BclI	TGATCA	1 cut(s)	675
BfrI	CTTAAG	1 cut(s)	626
BisI	GCNGC	8 cut(s)	193, 196, 199, 229, 232, 597, 632, 685
BlsI	GCNGC	8 cut(s)	194, 197, 200, 230, 233, 598, 633, 686
Bme1390I	CCNGG	2 cut(s)	129, 702
BmeT110I	CYCGRG	1 cut(s)	430
BmrFI	CCNGG	2 cut(s)	129, 702
BmsI	GCATC	2 cut(s)	401, 469
BpuEI	CTTGAG	1 cut(s)	605
BsaJI	CCNNGG	2 cut(s)	175, 574
BsaXI	ACNNNNNCTCC	4 cut(s)	322, 352, 682, 712
Bsc4I	CCNNNNNNNGG	2 cut(s)	407, 701
Bse1I	ACTGG	3 cut(s)	296, 545, 566
BseBI	CCWGG	2 cut(s)	129, 702
BseDI	CCNNGG	2 cut(s)	175, 574
BseGI	GGATG	7 cut(s)	100, 124, 281, 381, 416, 439, 511
BseLI	CCNNNNNNNGG	2 cut(s)	407, 701
BseMII	CTCAG	1 cut(s)	107
BseNI	ACTGG	3 cut(s)	296, 545, 566
BseRI	GAGGAG	8 cut(s)	198, 201, 225, 228, 378, 435, 684, 687
BseXI	GCAGC	2 cut(s)	608, 618
BseYI	CCCAGC	1 cut(s)	511
BshFI	GGCC	2 cut(s)	132, 617
BsiHKAI	GWGCWC	2 cut(s)	85, 573
BsiHKCI	CYCGRG	1 cut(s)	430
BslI	CCNNNNNNNGG	2 cut(s)	407, 701
BsmI	GAATGC	1 cut(s)	559
BsnI	GGCC	2 cut(s)	132, 617
BsoBI	CYCGRG	1 cut(s)	430
Bsp1286I	GDGCHC	2 cut(s)	85, 573
Bsp143I	GATC	1 cut(s)	675
BspANI	GGCC	2 cut(s)	132, 617
BspCNI	CTCAG	1 cut(s)	106
BspQI	GCTCTTC	1 cut(s)	669
BspTI	CTTAAG	1 cut(s)	626
BsrI	ACTGG	3 cut(s)	296, 545, 566
BssECI	CCNNGG	2 cut(s)	175, 574
BssMI	GATC	1 cut(s)	675
BssT1I	CCWWGG	1 cut(s)	574
Bst2UI	CCWGG	2 cut(s)	129, 702
Bst6I	CTCTTC	1 cut(s)	669
BstAFI	CTTAAG	1 cut(s)	626
BstC8I	GCNNGC	1 cut(s)	559
BstDEI	CTNAG	1 cut(s)	93
BstEII	GGTNACC	1 cut(s)	260
BstF5I	GGATG	7 cut(s)	100, 124, 281, 381, 416, 439, 511
BstHHI	GCGC	1 cut(s)	484
BstKTI	GATC	1 cut(s)	678
BstMBI	GATC	1 cut(s)	675
BstMWI	GCNNNNNNNGC	4 cut(s)	198, 204, 631, 668
BstNI	CCWGG	2 cut(s)	129, 702
BstPI	GGTNACC	1 cut(s)	260
BstSCI	CCNGG	2 cut(s)	127, 700
BstV1I	GCAGC	2 cut(s)	608, 618
BstXI	CCANNNNNNTGG	1 cut(s)	179
BsuRI	GGCC	2 cut(s)	132, 617
BtsCI	GGATG	7 cut(s)	100, 124, 281, 381, 416, 439, 511
BtsIMutI	CAGTG	1 cut(s)	573
Cac8I	GCNNGC	1 cut(s)	559
CfoI	GCGC	1 cut(s)	484
Csp6I	GTAC	2 cut(s)	90, 370
CspCI	CAANNNNNGTGG	2 cut(s)	223, 258
CviAII	CATG	1 cut(s)	49
CviQI	GTAC	2 cut(s)	90, 370
DdeI	CTNAG	1 cut(s)	93
DpnI	GATC	1 cut(s)	677
DpnII	GATC	1 cut(s)	675
EaeI	YGGCCR	1 cut(s)	615
Eam1104I	CTCTTC	1 cut(s)	669
EarI	CTCTTC	1 cut(s)	669
EciI	GGCGGA	3 cut(s)	222, 435, 705
Eco130I	CCWWGG	1 cut(s)	574
Eco57I	CTGAAG	1 cut(s)	506
Eco88I	CYCGRG	1 cut(s)	430
Eco91I	GGTNACC	1 cut(s)	260
EcoO65I	GGTNACC	1 cut(s)	260
EcoRII	CCWGG	2 cut(s)	127, 700
EcoT14I	CCWWGG	1 cut(s)	574
ErhI	CCWWGG	1 cut(s)	574
FaeI	CATG	1 cut(s)	52
FaiI	YATR	5 cut(s)	50, 528, 620, 689, 712
FalI	AAGNNNNNCTT	2 cut(s)	567, 599
FatI	CATG	1 cut(s)	48
FbaI	TGATCA	1 cut(s)	675
FblI	GTMKAC	1 cut(s)	17
Fnu4HI	GCNGC	8 cut(s)	193, 196, 199, 229, 232, 597, 632, 685
FokI	GGATG	7 cut(s)	87, 111, 268, 368, 423, 426, 518
Fsp4HI	GCNGC	8 cut(s)	193, 196, 199, 229, 232, 597, 632, 685
GlaI	GCGC	1 cut(s)	483
GluI	GCNGC	8 cut(s)	193, 196, 199, 229, 232, 597, 632, 685
GsaI	CCCAGC	1 cut(s)	515
HaeIII	GGCC	2 cut(s)	132, 617
HhaI	GCGC	1 cut(s)	484
Hin1II	CATG	1 cut(s)	52
Hin6I	GCGC	1 cut(s)	482
HinP1I	GCGC	1 cut(s)	482
HindIII	AAGCTT	2 cut(s)	75, 669
HinfI	GANTC	1 cut(s)	541
HphI	GGTGA	1 cut(s)	254
Hpy166II	GTNNAC	2 cut(s)	18, 437
Hpy188III	TCNNGA	1 cut(s)	40
Hpy8I	GTNNAC	2 cut(s)	18, 437
HpyAV	CCTTC	2 cut(s)	369, 459
HpyCH4V	TGCA	3 cut(s)	48, 526, 612
HpyF10VI	GCNNNNNNNGC	4 cut(s)	198, 204, 631, 668
HpyF3I	CTNAG	1 cut(s)	93
Hsp92II	CATG	1 cut(s)	52
HspAI	GCGC	1 cut(s)	482
Ksp22I	TGATCA	1 cut(s)	675
Kzo9I	GATC	1 cut(s)	675
LguI	GCTCTTC	1 cut(s)	669
LmnI	GCTCC	2 cut(s)	88, 576
Lsp1109I	GCAGC	2 cut(s)	608, 618
LweI	GCATC	2 cut(s)	401, 469
MaeIII	GTNAC	1 cut(s)	260
MalI	GATC	1 cut(s)	677
MboI	GATC	1 cut(s)	675
MboII	GAAGA	4 cut(s)	22, 28, 640, 656
MhlI	GDGCHC	2 cut(s)	85, 573
MluCI	AATT	4 cut(s)	54, 69, 141, 252
MmeI	TCCRAC	1 cut(s)	416
MseI	TTAA	2 cut(s)	627, 724
MslI	CAYNNNNRTG	1 cut(s)	177
MspCI	CTTAAG	1 cut(s)	626
MspR9I	CCNGG	2 cut(s)	129, 702
Mva1269I	GAATGC	1 cut(s)	559
MvaI	CCWGG	2 cut(s)	129, 702
MwoI	GCNNNNNNNGC	4 cut(s)	198, 204, 631, 668
NdeII	GATC	1 cut(s)	675
NlaIII	CATG	1 cut(s)	52
NmuCI	GTSAC	1 cut(s)	260
OliI	CACNNNNGTG	1 cut(s)	177
PciSI	GCTCTTC	1 cut(s)	669
PctI	GAATGC	1 cut(s)	559
PfeI	GAWTC	1 cut(s)	541
PkrI	GCNGC	8 cut(s)	194, 197, 200, 230, 233, 598, 633, 686
Psp6I	CCWGG	2 cut(s)	127, 700
PspEI	GGTNACC	1 cut(s)	260
PspFI	CCCAGC	1 cut(s)	511
PspGI	CCWGG	2 cut(s)	127, 700
RsaI	GTAC	2 cut(s)	91, 371
RsaNI	GTAC	2 cut(s)	90, 370
RseI	CAYNNNNRTG	1 cut(s)	177
SapI	GCTCTTC	1 cut(s)	669
SaqAI	TTAA	2 cut(s)	627, 724
SatI	GCNGC	8 cut(s)	193, 196, 199, 229, 232, 597, 632, 685
Sau3AI	GATC	1 cut(s)	675
ScrFI	CCNGG	2 cut(s)	129, 702
SduI	GDGCHC	2 cut(s)	85, 573
SfaNI	GCATC	2 cut(s)	401, 469
SmiMI	CAYNNNNRTG	1 cut(s)	177
SmlI	CTYRAG	2 cut(s)	584, 626
SmoI	CTYRAG	2 cut(s)	584, 626
Sse9I	AATT	4 cut(s)	54, 69, 141, 252
StyD4I	CCNGG	2 cut(s)	127, 700
StyI	CCWWGG	1 cut(s)	574
TasI	AATT	4 cut(s)	54, 69, 141, 252
TatI	WGTACW	1 cut(s)	89
TauI	GCSGC	6 cut(s)	195, 198, 201, 231, 234, 687
TfiI	GAWTC	1 cut(s)	541
Tru1I	TTAA	2 cut(s)	627, 724
Tru9I	TTAA	2 cut(s)	627, 724
TscAI	CASTG	1 cut(s)	573
TseFI	GTSAC	1 cut(s)	260
TseI	GCWGC	2 cut(s)	596, 631
Tsp45I	GTSAC	1 cut(s)	260
TspDTI	ATGAA	2 cut(s)	22, 640
TspRI	CASTG	1 cut(s)	573
Vha464I	CTTAAG	1 cut(s)	626
XapI	RAATTY	1 cut(s)	141
XmiI	GTMKAC	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.