Prupe.5G073000_v2.0.a1

36.4 kDa proline-rich

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0015789
Physical Location & Seq
Forward (+)
8749869 .. 8752327
2459 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G073000.1

Sequence Viewer

Length: 789 bp
ATGGGTTCCAAGGTTACTGCCATGTTCTTCATCTCTTTGATTTGCACGGTTTTCGCATTGCCTCCAATTCAAGCTTGTACACCTTGTACTCAGCCACACCCATCAAAACCACACCCTCCACATCATCCATCACATCCACCACAACCACCTTCCCACACTCCAACCCATCCCAAAAACCCACCAACCCCAAAACAACCACCACACCATAAACCGCACCCAAAAGCCCCATCCAAGAACCCACCGGTTATATCCCCGCCCATAGTAAAACCTCCACCGCACCCAAAACCCCCATCCAAGAACCCACCCGTTATATCCCCGCCCATAGTAAAACCTCCAGTCACTAACCCTCCTGTGACAATCCCACCCCCTTCCACTCCTTACCCCGGCAGCCCTCCTGGTGGTGGAGGAGGCGGAGGGGGCGGAGGGGGCGGAGGGGGCGGAGGCGGTGGTTGTGGTGGATGTGGTGGTGGTGGAGGAGGTGGAGGTGGAACTGTTCCGGGTCCAAACCCTCCTCCGCCCACTTCACCAACATGTCCAATTGATGCGCTTAAGTTGGGGCTTTGTGTGGACGTGCTTGGTGGTTTGGTGCATATTGGGCTTGGGAACCCAGTTGAGAATGCTTGCTGCCCAATTCTTGGAGGGTTGCTTGAGCTTGAAGCAGCCATTTGTCTTTGCACTACTATAAAGCTTAAGCTTCTTAACCTAAACATATTCATTCCTCTTGCTCTTCAAGCTTTGATTACTTGTGGGAAGACTCCTCCCCCTGGTTTTGTATGCCCTCCTCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Hydrophob_seed

Protein Analysis

263

Amino Acids

25.98

Weight (kDa)

9.1

Isoelectric Point (pI)

69.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015789)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G62500
fragaria_vesca FvH4_5g00120
malus_domestica MD04G1087700.v1.1
prunus_persica Prupe.5G073000_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0202811
rosa_laevigata RLG00000003570
rosa_multiflora Rmu_sc0002590.1_g000023 Rmu_sc0003429.1_g000016
rosa_roxburghii Rroxscaffold_3G00254240
rosa_rugosa Rorug07G0073200
rosa_samantha Rh7AG201000 Rh7BG201200 Rh7CG212400 Rh7DG207900
rosa_wichuraiana Rw7G017580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 635
AfaI GTAC 2 cut(s) 79, 88
AfiI CCNNNNNNNGG 5 cut(s) 383, 398, 401, 635, 764
AflII CTTAAG 2 cut(s) 548, 689
AflIII ACRYGT 1 cut(s) 530
AgeI ACCGGT 1 cut(s) 241
AgsI TTSAA 3 cut(s) 71, 656, 731
AjiI CACGTC 1 cut(s) 571
AjnI CCWGG 2 cut(s) 394, 763
AluBI AGCT 5 cut(s) 74, 652, 688, 694, 734
AluI AGCT 5 cut(s) 74, 652, 688, 694, 734
ApeKI GCWGC 3 cut(s) 387, 624, 659
AsiGI ACCGGT 1 cut(s) 241
AspLEI GCGC 1 cut(s) 547
AspS9I GGNCC 1 cut(s) 500
AsuC2I CCSGG 2 cut(s) 384, 498
AsuHPI GGTGA 1 cut(s) 516
AvaII GGWCC 1 cut(s) 500
BbsI GAAGAC 1 cut(s) 758
BbvI GCAGC 3 cut(s) 399, 611, 671
BccI CCATC 5 cut(s) 109, 136, 174, 235, 298
BcgI CGANNNNNNTGC 2 cut(s) 34, 68
BciT130I CCWGG 2 cut(s) 396, 765
BcnI CCSGG 2 cut(s) 384, 498
BfrI CTTAAG 2 cut(s) 548, 689
BisI GCNGC 3 cut(s) 388, 625, 660
BlsI GCNGC 3 cut(s) 389, 626, 661
Bme1390I CCNGG 4 cut(s) 384, 396, 498, 765
Bme18I GGWCC 1 cut(s) 500
BmgBI CACGTC 1 cut(s) 571
BmgT120I GGNCC 1 cut(s) 500
BmiI GGNNCC 3 cut(s) 7, 501, 605
BmrFI CCNGG 4 cut(s) 384, 396, 498, 765
BmrI ACTGGG 1 cut(s) 602
BmsI GCATC 1 cut(s) 532
BmuI ACTGGG 1 cut(s) 602
BpiI GAAGAC 1 cut(s) 758
BpmI CTGGAG 1 cut(s) 318
BpuEI CTTGAG 1 cut(s) 668
BpuMI CCSGG 2 cut(s) 384, 498
BsaJI CCNNGG 3 cut(s) 9, 382, 763
BsaWI WCCGGW 1 cut(s) 241
BsaXI ACNNNNNCTCC 2 cut(s) 331, 361
Bsc4I CCNNNNNNNGG 5 cut(s) 383, 398, 401, 635, 764
Bse118I RCCGGY 1 cut(s) 241
Bse1I ACTGG 2 cut(s) 335, 608
Bse3DI GCAATG 1 cut(s) 56
BseBI CCWGG 2 cut(s) 396, 765
BseDI CCNNGG 3 cut(s) 9, 382, 763
BseGI GGATG 6 cut(s) 124, 133, 166, 227, 290, 464
BseLI CCNNNNNNNGG 5 cut(s) 383, 398, 401, 635, 764
BseMI GCAATG 1 cut(s) 56
BseMII CTCAG 1 cut(s) 104
BseNI ACTGG 2 cut(s) 335, 608
BseRI GAGGAG 5 cut(s) 420, 489, 501, 747, 771
BseXI GCAGC 3 cut(s) 399, 611, 671
BshTI ACCGGT 1 cut(s) 241
BsiSI CCGG 3 cut(s) 242, 384, 497
BslI CCNNNNNNNGG 5 cut(s) 383, 398, 401, 635, 764
BsmI GAATGC 1 cut(s) 622
Bsp1407I TGTACA 1 cut(s) 77
BspCNI CTCAG 1 cut(s) 103
BspLI GGNNCC 3 cut(s) 7, 501, 605
BspQI GCTCTTC 1 cut(s) 732
BspTI CTTAAG 2 cut(s) 548, 689
BsrDI GCAATG 1 cut(s) 56
BsrFI RCCGGY 1 cut(s) 241
BsrGI TGTACA 1 cut(s) 77
BsrI ACTGG 2 cut(s) 335, 608
BssAI RCCGGY 1 cut(s) 241
BssECI CCNNGG 3 cut(s) 9, 382, 763
BssT1I CCWWGG 1 cut(s) 9
Bst2UI CCWGG 2 cut(s) 396, 765
Bst4CI ACNGT 2 cut(s) 49, 493
Bst6I CTCTTC 1 cut(s) 732
BstAFI CTTAAG 2 cut(s) 548, 689
BstAUI TGTACA 1 cut(s) 77
BstC8I GCNNGC 1 cut(s) 622
BstDEI CTNAG 1 cut(s) 90
BstF5I GGATG 6 cut(s) 124, 133, 166, 227, 290, 464
BstHHI GCGC 1 cut(s) 547
BstMWI GCNNNNNNNGC 5 cut(s) 417, 426, 435, 595, 731
BstNI CCWGG 2 cut(s) 396, 765
BstNSI RCATGY 1 cut(s) 534
BstSCI CCNGG 4 cut(s) 382, 394, 496, 763
BstV1I GCAGC 3 cut(s) 399, 611, 671
BstV2I GAAGAC 1 cut(s) 758
BtrI CACGTC 1 cut(s) 571
BtsCI GGATG 6 cut(s) 124, 133, 166, 227, 290, 464
Cac8I GCNNGC 1 cut(s) 622
CfoI GCGC 1 cut(s) 547
Cfr10I RCCGGY 1 cut(s) 241
Cfr13I GGNCC 1 cut(s) 500
Csp6I GTAC 2 cut(s) 78, 87
CspAI ACCGGT 1 cut(s) 241
CviAII CATG 2 cut(s) 22, 531
CviQI GTAC 2 cut(s) 78, 87
DdeI CTNAG 1 cut(s) 90
Eam1104I CTCTTC 1 cut(s) 732
EarI CTCTTC 1 cut(s) 732
EciI GGCGGA 5 cut(s) 426, 435, 444, 453, 504
Eco130I CCWWGG 1 cut(s) 9
Eco47I GGWCC 1 cut(s) 500
EcoRII CCWGG 2 cut(s) 394, 763
EcoT14I CCWWGG 1 cut(s) 9
ErhI CCWWGG 1 cut(s) 9
FaeI CATG 2 cut(s) 25, 534
FatI CATG 2 cut(s) 21, 530
FauI CCCGC 2 cut(s) 261, 324
Fnu4HI GCNGC 3 cut(s) 388, 625, 660
FokI GGATG 6 cut(s) 111, 120, 153, 214, 277, 471
Fsp4HI GCNGC 3 cut(s) 388, 625, 660
GlaI GCGC 1 cut(s) 546
GluI GCNGC 3 cut(s) 388, 625, 660
GsuI CTGGAG 1 cut(s) 318
HapII CCGG 3 cut(s) 242, 384, 497
HhaI GCGC 1 cut(s) 547
Hin1II CATG 2 cut(s) 25, 534
Hin6I GCGC 1 cut(s) 545
HinP1I GCGC 1 cut(s) 545
HindIII AAGCTT 4 cut(s) 72, 686, 692, 732
HinfI GANTC 1 cut(s) 754
HpaII CCGG 3 cut(s) 242, 384, 497
HphI GGTGA 1 cut(s) 516
Hpy166II GTNNAC 2 cut(s) 80, 568
Hpy8I GTNNAC 2 cut(s) 80, 568
HpyAV CCTTC 2 cut(s) 159, 378
HpyCH4III ACNGT 2 cut(s) 49, 493
HpyCH4IV ACGT 1 cut(s) 570
HpyCH4V TGCA 3 cut(s) 45, 589, 675
HpyF10VI GCNNNNNNNGC 5 cut(s) 417, 426, 435, 595, 731
HpyF3I CTNAG 1 cut(s) 90
HpySE526I ACGT 1 cut(s) 570
Hsp92II CATG 2 cut(s) 25, 534
HspAI GCGC 1 cut(s) 545
LguI GCTCTTC 1 cut(s) 732
Lsp1109I GCAGC 3 cut(s) 399, 611, 671
LweI GCATC 1 cut(s) 532
MaeII ACGT 1 cut(s) 570
MaeIII GTNAC 3 cut(s) 13, 337, 352
MboII GAAGA 3 cut(s) 19, 719, 763
MfeI CAATTG 1 cut(s) 537
MluCI AATT 3 cut(s) 66, 537, 630
MlyI GAGTC 1 cut(s) 748
MmeI TCCRAC 1 cut(s) 185
MseI TTAA 3 cut(s) 549, 690, 699
MslI CAYNNNNRTG 1 cut(s) 529
MspCI CTTAAG 2 cut(s) 548, 689
MspI CCGG 3 cut(s) 242, 384, 497
MspR9I CCNGG 4 cut(s) 384, 396, 498, 765
MunI CAATTG 1 cut(s) 537
Mva1269I GAATGC 1 cut(s) 622
MvaI CCWGG 2 cut(s) 396, 765
MwoI GCNNNNNNNGC 5 cut(s) 417, 426, 435, 595, 731
NciI CCSGG 2 cut(s) 384, 498
NlaIII CATG 2 cut(s) 25, 534
NlaIV GGNNCC 3 cut(s) 7, 501, 605
NmuCI GTSAC 2 cut(s) 337, 352
NspI RCATGY 1 cut(s) 534
PciI ACATGT 1 cut(s) 530
PciSI GCTCTTC 1 cut(s) 732
PctI GAATGC 1 cut(s) 622
PflMI CCANNNNNTGG 1 cut(s) 635
PinAI ACCGGT 1 cut(s) 241
PkrI GCNGC 3 cut(s) 389, 626, 661
PleI GAGTC 1 cut(s) 748
PpsI GAGTC 1 cut(s) 748
PscI ACATGT 1 cut(s) 530
Psp6I CCWGG 2 cut(s) 394, 763
PspGI CCWGG 2 cut(s) 394, 763
PspN4I GGNNCC 3 cut(s) 7, 501, 605
PspPI GGNCC 1 cut(s) 500
RsaI GTAC 2 cut(s) 79, 88
RsaNI GTAC 2 cut(s) 78, 87
RseI CAYNNNNRTG 1 cut(s) 529
SapI GCTCTTC 1 cut(s) 732
SaqAI TTAA 3 cut(s) 549, 690, 699
SatI GCNGC 3 cut(s) 388, 625, 660
Sau96I GGNCC 1 cut(s) 500
SchI GAGTC 1 cut(s) 748
ScrFI CCNGG 4 cut(s) 384, 396, 498, 765
SfaNI GCATC 1 cut(s) 532
SinI GGWCC 1 cut(s) 500
SmiMI CAYNNNNRTG 1 cut(s) 529
SmlI CTYRAG 3 cut(s) 548, 647, 689
SmoI CTYRAG 3 cut(s) 548, 647, 689
Sse9I AATT 3 cut(s) 66, 537, 630
StyD4I CCNGG 4 cut(s) 382, 394, 496, 763
StyI CCWWGG 1 cut(s) 9
TaaI ACNGT 2 cut(s) 49, 493
TaiI ACGT 1 cut(s) 573
TasI AATT 3 cut(s) 66, 537, 630
TatI WGTACW 2 cut(s) 77, 86
Tru1I TTAA 3 cut(s) 549, 690, 699
Tru9I TTAA 3 cut(s) 549, 690, 699
TseFI GTSAC 2 cut(s) 337, 352
TseI GCWGC 3 cut(s) 387, 624, 659
Tsp45I GTSAC 2 cut(s) 337, 352
TspDTI ATGAA 2 cut(s) 19, 703
Van91I CCANNNNNTGG 1 cut(s) 635
Vha464I CTTAAG 2 cut(s) 548, 689
VpaK11BI GGWCC 1 cut(s) 500
XceI RCATGY 1 cut(s) 534
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.