Rh7DG207900

36.4 kDa proline-rich

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0015789
Physical Location & Seq
Reverse (-)
19852247 .. 19854143
1897 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG207900.1

Sequence Viewer

Length: 702 bp
ATGATGGGTTCAAAGTCTACTGCAGTGTTCTTCATCTTCTTGATTTGCATGGTAATTGCGTTGCCACCAATTCAAGCTTGTGCTCCTTGTACTCAGCCTCATCCACCAAAACCGCCTAAACATCATCCAGGCCATTCCAAAATTCCTCCCCACCCCAAACACCCACCACACCACGGAGGTGGAGGAGGAAAAGGAGGCGGCGGCAAAGGAGGTGGAGGTGGAATTGGTGGTCACCCAAAAGTTCCCCCTCCATCCAAAAACCCACCAGTTGTATCTCCACCAATAATAACACCCCCTATTACTAAACCTCCTGTGACAATCCCACCTCCTTCCCCCTTGTACCCACCTTACATCCCTCCTCCAACGCCTCCTTGTGCTGGCTGCGGCGGAGGAGGAGGAGGTGGCTCGGGTAAACATCCTCCGCCTTCTCCTACACCAGCTACTTGTCCTATTGATGCGCTGAAGTTAGGGCTTTGTGTGGATGTGCTGGGTGGTTTGGTGCATATCGGGTTGGGGAATCCAGTTGAGAATGCTTGCTGTCCAGTGCTCCAAGGGTTGCTTGAGCTTGAAGCAGCGATTTGTCTTTGCACGGCCATAAGGCTTAAGCTGCTAAACCTAAACATCTTCATTCCTCTTGCTCTTCAAGCTTTGATCACTTGCGGCATAACTCCTCCTCCTGGTTTTGTATGTCCGCCTCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Hydrophob_seed

Protein Analysis

233

Amino Acids

23.36

Weight (kDa)

9.01

Isoelectric Point (pI)

62.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hydrophob_seed PF14547 148 - 231 2.6e-25 Hydrophobic seed protein
Tryp_alpha_amyl PF00234 149 - 230 8.8e-12 Protease inhibitor/seed storage/LTP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015789)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G62500
fragaria_vesca FvH4_5g00120
malus_domestica MD04G1087700.v1.1
prunus_persica Prupe.5G073000_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0202811
rosa_laevigata RLG00000003570
rosa_multiflora Rmu_sc0002590.1_g000023 Rmu_sc0003429.1_g000016
rosa_roxburghii Rroxscaffold_3G00254240
rosa_rugosa Rorug07G0073200
rosa_samantha Rh7AG201000 Rh7BG201200 Rh7CG212400 Rh7DG207900
rosa_wichuraiana Rw7G017580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 17
AciI CCGC 8 cut(s) 113, 198, 201, 384, 387, 422, 660, 692
AcoI YGGCCR 1 cut(s) 591
AcsI RAATTY 1 cut(s) 141
AcuI CTGAAG 1 cut(s) 482
AfaI GTAC 2 cut(s) 91, 341
AfiI CCNNNNNNNGG 3 cut(s) 173, 377, 677
AflII CTTAAG 1 cut(s) 602
AgsI TTSAA 4 cut(s) 12, 74, 569, 644
AjnI CCWGG 2 cut(s) 127, 676
AleI CACNNNNGTG 1 cut(s) 177
AluBI AGCT 5 cut(s) 77, 440, 565, 607, 647
AluI AGCT 5 cut(s) 77, 440, 565, 607, 647
Alw21I GWGCWC 2 cut(s) 85, 549
Ama87I CYCGRG 1 cut(s) 406
AoxI GGCC 2 cut(s) 130, 591
ApeKI GCWGC 3 cut(s) 381, 572, 607
ApoI RAATTY 1 cut(s) 141
AspLEI GCGC 1 cut(s) 460
AsuHPI GGTGA 1 cut(s) 224
AvaI CYCGRG 1 cut(s) 406
Bbv12I GWGCWC 2 cut(s) 85, 549
BbvI GCAGC 3 cut(s) 368, 584, 594
BccI CCATC 1 cut(s) 259
BceAI ACGGC 1 cut(s) 606
BciT130I CCWGG 2 cut(s) 129, 678
BclI TGATCA 1 cut(s) 651
BfmI CTRYAG 1 cut(s) 21
BfrI CTTAAG 1 cut(s) 602
BisI GCNGC 7 cut(s) 199, 202, 382, 385, 573, 608, 661
BlsI GCNGC 7 cut(s) 200, 203, 383, 386, 574, 609, 662
Bme1390I CCNGG 2 cut(s) 129, 678
BmeT110I CYCGRG 1 cut(s) 406
BmrFI CCNGG 2 cut(s) 129, 678
BmsI GCATC 1 cut(s) 445
BpuEI CTTGAG 1 cut(s) 581
BsaJI CCNNGG 2 cut(s) 172, 550
BsaXI ACNNNNNCTCC 4 cut(s) 292, 322, 658, 688
Bsc4I CCNNNNNNNGG 3 cut(s) 173, 377, 677
Bse1I ACTGG 3 cut(s) 266, 521, 542
BseBI CCWGG 2 cut(s) 129, 678
BseDI CCNNGG 2 cut(s) 172, 550
BseGI GGATG 6 cut(s) 100, 124, 251, 351, 415, 487
BseLI CCNNNNNNNGG 3 cut(s) 173, 377, 677
BseMII CTCAG 1 cut(s) 107
BseNI ACTGG 3 cut(s) 266, 521, 542
BseRI GAGGAG 7 cut(s) 198, 348, 405, 408, 411, 660, 663
BseXI GCAGC 3 cut(s) 368, 584, 594
BseYI CCCAGC 1 cut(s) 487
BshFI GGCC 2 cut(s) 132, 593
BsiHKAI GWGCWC 2 cut(s) 85, 549
BsiHKCI CYCGRG 1 cut(s) 406
BslI CCNNNNNNNGG 3 cut(s) 173, 377, 677
BsmI GAATGC 1 cut(s) 535
BsnI GGCC 2 cut(s) 132, 593
BsoBI CYCGRG 1 cut(s) 406
Bsp1286I GDGCHC 2 cut(s) 85, 549
Bsp143I GATC 1 cut(s) 651
BspACI CCGC 8 cut(s) 113, 198, 201, 384, 387, 422, 660, 692
BspANI GGCC 2 cut(s) 132, 593
BspCNI CTCAG 1 cut(s) 106
BspMAI CTGCAG 1 cut(s) 25
BspQI GCTCTTC 1 cut(s) 645
BspTI CTTAAG 1 cut(s) 602
BsrI ACTGG 3 cut(s) 266, 521, 542
BssECI CCNNGG 2 cut(s) 172, 550
BssMI GATC 1 cut(s) 651
BssT1I CCWWGG 1 cut(s) 550
Bst2UI CCWGG 2 cut(s) 129, 678
Bst6I CTCTTC 1 cut(s) 645
BstAFI CTTAAG 1 cut(s) 602
BstC8I GCNNGC 2 cut(s) 379, 535
BstDEI CTNAG 1 cut(s) 93
BstDSI CCRYGG 1 cut(s) 172
BstEII GGTNACC 1 cut(s) 230
BstF5I GGATG 6 cut(s) 100, 124, 251, 351, 415, 487
BstHHI GCGC 1 cut(s) 460
BstKTI GATC 1 cut(s) 654
BstMBI GATC 1 cut(s) 651
BstMWI GCNNNNNNNGC 2 cut(s) 607, 644
BstNI CCWGG 2 cut(s) 129, 678
BstPI GGTNACC 1 cut(s) 230
BstSCI CCNGG 2 cut(s) 127, 676
BstSFI CTRYAG 1 cut(s) 21
BstV1I GCAGC 3 cut(s) 368, 584, 594
BstXI CCANNNNNNTGG 1 cut(s) 179
BsuRI GGCC 2 cut(s) 132, 593
BtgI CCRYGG 1 cut(s) 172
BtsCI GGATG 6 cut(s) 100, 124, 251, 351, 415, 487
BtsI GCAGTG 1 cut(s) 30
BtsIMutI CAGTG 2 cut(s) 30, 549
Cac8I GCNNGC 2 cut(s) 379, 535
CfoI GCGC 1 cut(s) 460
Csp6I GTAC 2 cut(s) 90, 340
CspCI CAANNNNNGTGG 2 cut(s) 193, 228
CviAII CATG 1 cut(s) 49
CviQI GTAC 2 cut(s) 90, 340
DdeI CTNAG 1 cut(s) 93
DpnI GATC 1 cut(s) 653
DpnII GATC 1 cut(s) 651
EaeI YGGCCR 1 cut(s) 591
Eam1104I CTCTTC 1 cut(s) 645
EarI CTCTTC 1 cut(s) 645
EciI GGCGGA 3 cut(s) 402, 411, 681
Eco130I CCWWGG 1 cut(s) 550
Eco57I CTGAAG 1 cut(s) 482
Eco88I CYCGRG 1 cut(s) 406
Eco91I GGTNACC 1 cut(s) 230
EcoO65I GGTNACC 1 cut(s) 230
EcoRII CCWGG 2 cut(s) 127, 676
EcoT14I CCWWGG 1 cut(s) 550
ErhI CCWWGG 1 cut(s) 550
FaeI CATG 1 cut(s) 52
FaiI YATR 6 cut(s) 50, 504, 596, 665, 688, 700
FalI AAGNNNNNCTT 2 cut(s) 543, 575
FatI CATG 1 cut(s) 48
FbaI TGATCA 1 cut(s) 651
FblI GTMKAC 1 cut(s) 17
Fnu4HI GCNGC 7 cut(s) 199, 202, 382, 385, 573, 608, 661
FokI GGATG 6 cut(s) 87, 111, 238, 338, 402, 494
Fsp4HI GCNGC 7 cut(s) 199, 202, 382, 385, 573, 608, 661
GlaI GCGC 1 cut(s) 459
GluI GCNGC 7 cut(s) 199, 202, 382, 385, 573, 608, 661
GsaI CCCAGC 1 cut(s) 491
HaeIII GGCC 2 cut(s) 132, 593
HhaI GCGC 1 cut(s) 460
Hin1II CATG 1 cut(s) 52
Hin6I GCGC 1 cut(s) 458
HinP1I GCGC 1 cut(s) 458
HindIII AAGCTT 2 cut(s) 75, 645
HinfI GANTC 1 cut(s) 517
HphI GGTGA 1 cut(s) 224
Hpy166II GTNNAC 2 cut(s) 18, 413
Hpy188III TCNNGA 1 cut(s) 40
Hpy8I GTNNAC 2 cut(s) 18, 413
HpyAV CCTTC 2 cut(s) 339, 435
HpyCH4V TGCA 4 cut(s) 23, 48, 502, 588
HpyF10VI GCNNNNNNNGC 2 cut(s) 607, 644
HpyF3I CTNAG 1 cut(s) 93
Hsp92II CATG 1 cut(s) 52
HspAI GCGC 1 cut(s) 458
Ksp22I TGATCA 1 cut(s) 651
Kzo9I GATC 1 cut(s) 651
LguI GCTCTTC 1 cut(s) 645
LmnI GCTCC 2 cut(s) 88, 552
Lsp1109I GCAGC 3 cut(s) 368, 584, 594
LweI GCATC 1 cut(s) 445
MaeIII GTNAC 2 cut(s) 230, 313
MalI GATC 1 cut(s) 653
MboI GATC 1 cut(s) 651
MboII GAAGA 4 cut(s) 22, 28, 616, 632
MhlI GDGCHC 2 cut(s) 85, 549
MluCI AATT 4 cut(s) 54, 69, 141, 222
MmeI TCCRAC 1 cut(s) 386
MseI TTAA 1 cut(s) 603
MslI CAYNNNNRTG 1 cut(s) 177
MspCI CTTAAG 1 cut(s) 602
MspR9I CCNGG 2 cut(s) 129, 678
Mva1269I GAATGC 1 cut(s) 535
MvaI CCWGG 2 cut(s) 129, 678
MwoI GCNNNNNNNGC 2 cut(s) 607, 644
NdeII GATC 1 cut(s) 651
NlaIII CATG 1 cut(s) 52
NmuCI GTSAC 2 cut(s) 230, 313
OliI CACNNNNGTG 1 cut(s) 177
PciSI GCTCTTC 1 cut(s) 645
PctI GAATGC 1 cut(s) 535
PfeI GAWTC 1 cut(s) 517
PkrI GCNGC 7 cut(s) 200, 203, 383, 386, 574, 609, 662
Psp6I CCWGG 2 cut(s) 127, 676
PspEI GGTNACC 1 cut(s) 230
PspFI CCCAGC 1 cut(s) 487
PspGI CCWGG 2 cut(s) 127, 676
PstI CTGCAG 1 cut(s) 25
RsaI GTAC 2 cut(s) 91, 341
RsaNI GTAC 2 cut(s) 90, 340
RseI CAYNNNNRTG 1 cut(s) 177
SapI GCTCTTC 1 cut(s) 645
SaqAI TTAA 1 cut(s) 603
SatI GCNGC 7 cut(s) 199, 202, 382, 385, 573, 608, 661
Sau3AI GATC 1 cut(s) 651
ScrFI CCNGG 2 cut(s) 129, 678
SduI GDGCHC 2 cut(s) 85, 549
SfaNI GCATC 1 cut(s) 445
SfcI CTRYAG 1 cut(s) 21
SmiMI CAYNNNNRTG 1 cut(s) 177
SmlI CTYRAG 2 cut(s) 560, 602
SmoI CTYRAG 2 cut(s) 560, 602
Sse9I AATT 4 cut(s) 54, 69, 141, 222
SsiI CCGC 8 cut(s) 113, 198, 201, 384, 387, 422, 660, 692
StyD4I CCNGG 2 cut(s) 127, 676
StyI CCWWGG 1 cut(s) 550
TasI AATT 4 cut(s) 54, 69, 141, 222
TatI WGTACW 1 cut(s) 89
TauI GCSGC 4 cut(s) 201, 204, 387, 663
TfiI GAWTC 1 cut(s) 517
Tru1I TTAA 1 cut(s) 603
Tru9I TTAA 1 cut(s) 603
TscAI CASTG 2 cut(s) 30, 549
TseFI GTSAC 2 cut(s) 230, 313
TseI GCWGC 3 cut(s) 381, 572, 607
Tsp45I GTSAC 2 cut(s) 230, 313
TspDTI ATGAA 2 cut(s) 22, 616
TspGWI ACGGA 1 cut(s) 189
TspRI CASTG 2 cut(s) 30, 549
Vha464I CTTAAG 1 cut(s) 602
XapI RAATTY 1 cut(s) 141
XmiI GTMKAC 1 cut(s) 17
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.