Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0015789

Physical Location & Seq

Genomic Coordinates Reverse (-)

13014260 .. 13015039

Gene Structure 780 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1087700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGAGTTCCAAGGTCATTGCAATGTTCTTCATTTTCTTGATTTGCATGGTAATTGCATTGCCTCCAATTCAAGCTTGTACACCTTGTACTCAACCACATCCATCAAAACCACACCCTCCACATCATCCATCACATCCAACACAACCACCTTACCACCATCCCAAAAATCCTCCACACCCAAACCCACCAACCACAAAACATCCACCACAACATAAACCCCACCCACCATCCAAGAACCCACCAGTAGTTATATCCCCACCCGTAATAACGCCTCCAGTTACTCACCCTCCTGTGACAATCCCACCCCCTTCCTCTCACTACCCACCTTACATTGGCAGCCCTCCTGGTGGTGGCGGCGGTGGAGGAGGTGGTGGTGGAGGAGGTGGCGGTGGTAGTGGTGGTGGTGGAGGCGGAGGTGGTGGTGGTGGTTGCGGTGGTTGCCCAGGGGGCGGAGGAAGTAGCCCGGGTGGGGGAGGAAGTGTTCCAGGGTTTAACCCTCCGCCGGCTACATCACCAGCTACATGTCCTATAGATGCGCTGAAGCTGGGGCTTTGTGTGGATGTCCTTGGTGGTTTGGTGCATATTGGGTTGGGGAACCCGGTTGAGAATGCTTGCTGTCCAGTGCTTGGAGGGTTACTTGAGCTTGAAGCCGCCATTTGCCTTTGCACTACTATAAGGCTTAAGCTGCTTAACCTGAACATATTTATTCCTCTAGCTCTTCAAGCTTTAATTACTTGTGGGAAGACTCCTCCTCCTGGTTTTGTATGCCCTCCTCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hydrophob_seed

Protein Analysis

260

Amino Acids

25.5

Weight (kDa)

8.59

Isoelectric Point (pI)

77.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrophob_seed	PF14547	174 - 257	7.6e-26	Hydrophobic seed protein
Tryp_alpha_amyl	PF00234	175 - 256	1.6e-10	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015789)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62500
fragaria_vesca	FvH4_5g00120
malus_domestica	MD04G1087700.v1.1
prunus_persica	Prupe.5G073000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0202811
rosa_laevigata	RLG00000003570
rosa_multiflora	Rmu_sc0002590.1_g000023 Rmu_sc0003429.1_g000016
rosa_roxburghii	Rroxscaffold_3G00254240
rosa_rugosa	Rorug07G0073200
rosa_samantha	Rh7AG201000 Rh7BG201200 Rh7CG212400 Rh7DG207900
rosa_wichuraiana	Rw7G017580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	626
AciI	CCGC	8 cut(s)	354, 357, 387, 411, 432, 450, 500, 651
AcuI	CTGAAG	1 cut(s)	560
AfaI	GTAC	2 cut(s)	79, 88
AfiI	CCNNNNNNNGG	9 cut(s)	332, 347, 350, 449, 469, 470, 502, 626, 755
AflII	CTTAAG	1 cut(s)	680
AflIII	ACRYGT	1 cut(s)	521
AgsI	TTSAA	3 cut(s)	71, 647, 722
AjnI	CCWGG	4 cut(s)	343, 442, 484, 754
AloI	GAACNNNNNNTCC	2 cut(s)	465, 497
AluBI	AGCT	7 cut(s)	74, 518, 544, 643, 685, 716, 725
AluI	AGCT	7 cut(s)	74, 518, 544, 643, 685, 716, 725
Ama87I	CYCGRG	1 cut(s)	463
ApeKI	GCWGC	2 cut(s)	336, 685
AspLEI	GCGC	1 cut(s)	538
AsuC2I	CCSGG	3 cut(s)	464, 465, 599
AsuHPI	GGTGA	2 cut(s)	275, 504
AvaI	CYCGRG	1 cut(s)	463
BbsI	GAAGAC	1 cut(s)	749
BbvI	GCAGC	2 cut(s)	348, 672
BccI	CCATC	4 cut(s)	109, 136, 165, 235
BciT130I	CCWGG	4 cut(s)	345, 444, 486, 756
BcnI	CCSGG	3 cut(s)	464, 465, 599
BfaI	CTAG	1 cut(s)	713
BfmI	CTRYAG	1 cut(s)	528
BfrI	CTTAAG	1 cut(s)	680
BglI	GCCNNNNNGGC	1 cut(s)	447
BisI	GCNGC	4 cut(s)	337, 355, 651, 686
BlsI	GCNGC	4 cut(s)	338, 356, 652, 687
Bme1390I	CCNGG	7 cut(s)	345, 444, 464, 465, 486, 599, 756
BmeT110I	CYCGRG	1 cut(s)	463
BmiI	GGNNCC	1 cut(s)	596
BmrFI	CCNGG	7 cut(s)	345, 444, 464, 465, 486, 599, 756
BmsI	GCATC	1 cut(s)	523
BpiI	GAAGAC	1 cut(s)	749
BpmI	CTGGAG	1 cut(s)	258
BpuEI	CTTGAG	1 cut(s)	659
BpuMI	CCSGG	3 cut(s)	464, 465, 599
BsaJI	CCNNGG	6 cut(s)	9, 442, 443, 463, 485, 565
BsaXI	ACNNNNNCTCC	6 cut(s)	271, 301, 465, 495, 736, 766
Bsc4I	CCNNNNNNNGG	9 cut(s)	332, 347, 350, 449, 469, 470, 502, 626, 755
Bse118I	RCCGGY	1 cut(s)	502
Bse1I	ACTGG	3 cut(s)	242, 275, 620
Bse3DI	GCAATG	3 cut(s)	15, 27, 56
BseBI	CCWGG	4 cut(s)	345, 444, 486, 756
BseDI	CCNNGG	6 cut(s)	9, 442, 443, 463, 485, 565
BseGI	GGATG	7 cut(s)	97, 124, 133, 157, 199, 227, 565
BseLI	CCNNNNNNNGG	9 cut(s)	332, 347, 350, 449, 469, 470, 502, 626, 755
BseMI	GCAATG	3 cut(s)	15, 27, 56
BseNI	ACTGG	3 cut(s)	242, 275, 620
BseRI	GAGGAG	5 cut(s)	378, 393, 738, 741, 762
BseXI	GCAGC	2 cut(s)	348, 672
BseYI	CCCAGC	1 cut(s)	544
BsiHKCI	CYCGRG	1 cut(s)	463
BsiSI	CCGG	3 cut(s)	464, 503, 599
BslI	CCNNNNNNNGG	9 cut(s)	332, 347, 350, 449, 469, 470, 502, 626, 755
BsmI	GAATGC	1 cut(s)	613
BsoBI	CYCGRG	1 cut(s)	463
Bsp1407I	TGTACA	1 cut(s)	77
BspACI	CCGC	8 cut(s)	354, 357, 387, 411, 432, 450, 500, 651
BspLI	GGNNCC	1 cut(s)	596
BspQI	GCTCTTC	1 cut(s)	723
BspTI	CTTAAG	1 cut(s)	680
BsrDI	GCAATG	3 cut(s)	15, 27, 56
BsrFI	RCCGGY	1 cut(s)	502
BsrGI	TGTACA	1 cut(s)	77
BsrI	ACTGG	3 cut(s)	242, 275, 620
BssAI	RCCGGY	1 cut(s)	502
BssECI	CCNNGG	6 cut(s)	9, 442, 443, 463, 485, 565
BssT1I	CCWWGG	2 cut(s)	9, 565
Bst2UI	CCWGG	4 cut(s)	345, 444, 486, 756
Bst6I	CTCTTC	1 cut(s)	723
BstAFI	CTTAAG	1 cut(s)	680
BstAUI	TGTACA	1 cut(s)	77
BstC8I	GCNNGC	2 cut(s)	504, 613
BstF5I	GGATG	7 cut(s)	97, 124, 133, 157, 199, 227, 565
BstHHI	GCGC	1 cut(s)	538
BstMWI	GCNNNNNNNGC	4 cut(s)	438, 447, 685, 722
BstNI	CCWGG	4 cut(s)	345, 444, 486, 756
BstNSI	RCATGY	1 cut(s)	525
BstSCI	CCNGG	7 cut(s)	343, 442, 462, 463, 484, 597, 754
BstSFI	CTRYAG	1 cut(s)	528
BstV1I	GCAGC	2 cut(s)	348, 672
BstV2I	GAAGAC	1 cut(s)	749
BtsCI	GGATG	7 cut(s)	97, 124, 133, 157, 199, 227, 565
BtsIMutI	CAGTG	1 cut(s)	627
Cac8I	GCNNGC	2 cut(s)	504, 613
CfoI	GCGC	1 cut(s)	538
Cfr10I	RCCGGY	1 cut(s)	502
Cfr9I	CCCGGG	1 cut(s)	463
Csp6I	GTAC	2 cut(s)	78, 87
CviAII	CATG	2 cut(s)	46, 522
CviQI	GTAC	2 cut(s)	78, 87
Eam1104I	CTCTTC	1 cut(s)	723
EarI	CTCTTC	1 cut(s)	723
EciI	GGCGGA	3 cut(s)	426, 465, 489
Eco130I	CCWWGG	2 cut(s)	9, 565
Eco57I	CTGAAG	1 cut(s)	560
Eco88I	CYCGRG	1 cut(s)	463
EcoRII	CCWGG	4 cut(s)	343, 442, 484, 754
EcoT14I	CCWWGG	2 cut(s)	9, 565
ErhI	CCWWGG	2 cut(s)	9, 565
FaeI	CATG	2 cut(s)	49, 525
FaiI	YATR	9 cut(s)	47, 213, 251, 523, 530, 582, 674, 701, 766
FatI	CATG	2 cut(s)	45, 521
Fnu4HI	GCNGC	4 cut(s)	337, 355, 651, 686
FokI	GGATG	7 cut(s)	84, 111, 120, 144, 186, 214, 572
Fsp4HI	GCNGC	4 cut(s)	337, 355, 651, 686
FspBI	CTAG	1 cut(s)	713
GlaI	GCGC	1 cut(s)	537
GluI	GCNGC	4 cut(s)	337, 355, 651, 686
GsaI	CCCAGC	1 cut(s)	548
GsuI	CTGGAG	1 cut(s)	258
HapII	CCGG	3 cut(s)	464, 503, 599
HhaI	GCGC	1 cut(s)	538
Hin1II	CATG	2 cut(s)	49, 525
Hin6I	GCGC	1 cut(s)	536
HinP1I	GCGC	1 cut(s)	536
HindIII	AAGCTT	2 cut(s)	72, 723
HinfI	GANTC	1 cut(s)	745
HpaII	CCGG	3 cut(s)	464, 503, 599
HphI	GGTGA	2 cut(s)	275, 504
Hpy166II	GTNNAC	1 cut(s)	80
Hpy188III	TCNNGA	1 cut(s)	37
Hpy8I	GTNNAC	1 cut(s)	80
HpyAV	CCTTC	1 cut(s)	318
HpyCH4V	TGCA	5 cut(s)	20, 45, 56, 580, 666
HpyF10VI	GCNNNNNNNGC	4 cut(s)	438, 447, 685, 722
Hsp92II	CATG	2 cut(s)	49, 525
HspAI	GCGC	1 cut(s)	536
KroI	GCCGGC	1 cut(s)	502
KroNI	GCCGGC	1 cut(s)	504
LguI	GCTCTTC	1 cut(s)	723
Lsp1109I	GCAGC	2 cut(s)	348, 672
LweI	GCATC	1 cut(s)	523
MaeI	CTAG	1 cut(s)	713
MaeIII	GTNAC	3 cut(s)	277, 292, 633
MboII	GAAGA	3 cut(s)	19, 710, 754
MluCI	AATT	3 cut(s)	51, 66, 729
MlyI	GAGTC	1 cut(s)	739
MmeI	TCCRAC	1 cut(s)	161
MroNI	GCCGGC	1 cut(s)	502
MseI	TTAA	4 cut(s)	492, 681, 690, 728
MslI	CAYNNNNRTG	1 cut(s)	20
MspCI	CTTAAG	1 cut(s)	680
MspI	CCGG	3 cut(s)	464, 503, 599
MspR9I	CCNGG	7 cut(s)	345, 444, 464, 465, 486, 599, 756
Mva1269I	GAATGC	1 cut(s)	613
MvaI	CCWGG	4 cut(s)	345, 444, 486, 756
MwoI	GCNNNNNNNGC	4 cut(s)	438, 447, 685, 722
NaeI	GCCGGC	1 cut(s)	504
NciI	CCSGG	3 cut(s)	464, 465, 599
NgoMIV	GCCGGC	1 cut(s)	502
NlaIII	CATG	2 cut(s)	49, 525
NlaIV	GGNNCC	1 cut(s)	596
NmuCI	GTSAC	1 cut(s)	292
NspI	RCATGY	1 cut(s)	525
PasI	CCCWGGG	1 cut(s)	443
PciI	ACATGT	1 cut(s)	521
PciSI	GCTCTTC	1 cut(s)	723
PctI	GAATGC	1 cut(s)	613
PdiI	GCCGGC	1 cut(s)	504
PflMI	CCANNNNNTGG	1 cut(s)	626
PkrI	GCNGC	4 cut(s)	338, 356, 652, 687
PleI	GAGTC	1 cut(s)	739
PpsI	GAGTC	1 cut(s)	739
PscI	ACATGT	1 cut(s)	521
Psp6I	CCWGG	4 cut(s)	343, 442, 484, 754
PspFI	CCCAGC	1 cut(s)	544
PspGI	CCWGG	4 cut(s)	343, 442, 484, 754
PspN4I	GGNNCC	1 cut(s)	596
RsaI	GTAC	2 cut(s)	79, 88
RsaNI	GTAC	2 cut(s)	78, 87
RseI	CAYNNNNRTG	1 cut(s)	20
SapI	GCTCTTC	1 cut(s)	723
SaqAI	TTAA	4 cut(s)	492, 681, 690, 728
SatI	GCNGC	4 cut(s)	337, 355, 651, 686
SchI	GAGTC	1 cut(s)	739
ScrFI	CCNGG	7 cut(s)	345, 444, 464, 465, 486, 599, 756
SfaNI	GCATC	1 cut(s)	523
SfcI	CTRYAG	1 cut(s)	528
SmaI	CCCGGG	1 cut(s)	465
SmiMI	CAYNNNNRTG	1 cut(s)	20
SmlI	CTYRAG	2 cut(s)	638, 680
SmoI	CTYRAG	2 cut(s)	638, 680
Sse9I	AATT	3 cut(s)	51, 66, 729
SsiI	CCGC	8 cut(s)	354, 357, 387, 411, 432, 450, 500, 651
SspMI	CTAG	1 cut(s)	713
StyD4I	CCNGG	7 cut(s)	343, 442, 462, 463, 484, 597, 754
StyI	CCWWGG	2 cut(s)	9, 565
TasI	AATT	3 cut(s)	51, 66, 729
TatI	WGTACW	2 cut(s)	77, 86
TauI	GCSGC	2 cut(s)	357, 653
Tru1I	TTAA	4 cut(s)	492, 681, 690, 728
Tru9I	TTAA	4 cut(s)	492, 681, 690, 728
TscAI	CASTG	1 cut(s)	627
TseFI	GTSAC	1 cut(s)	292
TseI	GCWGC	2 cut(s)	336, 685
Tsp45I	GTSAC	1 cut(s)	292
TspDTI	ATGAA	1 cut(s)	19
TspMI	CCCGGG	1 cut(s)	463
TspRI	CASTG	1 cut(s)	627
Van91I	CCANNNNNTGG	1 cut(s)	626
Vha464I	CTTAAG	1 cut(s)	680
XceI	RCATGY	1 cut(s)	525
XmaI	CCCGGG	1 cut(s)	463
XspI	CTAG	1 cut(s)	713

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.