Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0015789

Physical Location & Seq

Genomic Coordinates Reverse (-)

16731200 .. 16732587

Gene Structure 1388 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG201200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGATGGGTTCAAAGTCTACTGCCGTGTTCTTCATCTTCATGATTTGCATGGTAATTGCGTTGCCACCAATTCAAGCTTGTGCTCCTTGTACTCAGCCTCATCCACCAAAACCGCCTAAACATCATCCAGGCCATTCCAAAATTCCTCCCCACCCCAAACACCCACCACACCACGGAGGTGGAGGAGGAGGCGGCGGCGGTGGTGGAGGAGGAAAAGGAGGCGGCGGAGGCAAAGGAGGTGGAGGTGGAATTGGTGGTCACCCAAAAGTTCCCCCCCCATCCAAAAACCCGCCAGTTGTATCTCCACCAATAATAACACCCCCTATTACTAAACCTCCTGTGACAATCCCACCTCCTTCCCCCTCGTACCCACCTTACATCCCTCCTCCAACGCCTCCTTGTGCTGGATGCGGTGGAGGAGGAGGTGGTGGCTCGGGTAAACATCCTCCGCCTTCTACTACACCAACTACTTGTCCTATTGATGCGCTGAAGTTAGGGCTTTGTGTGGATGTGCTGGGTGGTTTGGTGCATATCGGGTTGGGGAATCCAGTTGAGAATGCTTGCTGTCCCGTGCTCCAAGGGTTGCTTGAGCTTGAAGCAGCGATTTGTCTTTGCACGGCCATAAGGCTTAAGCTGCTAAACCTAAACATCTTCATCCCTCTTGCTCTTCAAGCTTTGATCACTTGCGGCATAACTCCTCCTCCTGGTTTTGTATGTCCGCCTCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hydrophob_seed

Protein Analysis

242

Amino Acids

23.9

Weight (kDa)

9.01

Isoelectric Point (pI)

62.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrophob_seed	PF14547	157 - 240	2.8e-25	Hydrophobic seed protein
Tryp_alpha_amyl	PF00234	158 - 239	9.5e-12	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0015789)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62500
fragaria_vesca	FvH4_5g00120
malus_domestica	MD04G1087700.v1.1
prunus_persica	Prupe.5G073000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0202811
rosa_laevigata	RLG00000003570
rosa_multiflora	Rmu_sc0002590.1_g000023 Rmu_sc0003429.1_g000016
rosa_roxburghii	Rroxscaffold_3G00254240
rosa_rugosa	Rorug07G0073200
rosa_samantha	Rh7AG201000 Rh7BG201200 Rh7CG212400 Rh7DG207900
rosa_wichuraiana	Rw7G017580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	17
AcoI	YGGCCR	1 cut(s)	618
AcsI	RAATTY	1 cut(s)	141
AcuI	CTGAAG	1 cut(s)	509
AfaI	GTAC	2 cut(s)	91, 368
AfiI	CCNNNNNNNGG	3 cut(s)	173, 404, 704
AflII	CTTAAG	1 cut(s)	629
AgsI	TTSAA	4 cut(s)	12, 74, 596, 671
AjnI	CCWGG	2 cut(s)	127, 703
AleI	CACNNNNGTG	1 cut(s)	177
AluBI	AGCT	4 cut(s)	77, 592, 634, 674
AluI	AGCT	4 cut(s)	77, 592, 634, 674
Alw21I	GWGCWC	2 cut(s)	85, 576
Ama87I	CYCGRG	1 cut(s)	433
AoxI	GGCC	2 cut(s)	130, 618
ApeKI	GCWGC	2 cut(s)	599, 634
ApoI	RAATTY	1 cut(s)	141
AspLEI	GCGC	1 cut(s)	487
AsuHPI	GGTGA	1 cut(s)	251
AvaI	CYCGRG	1 cut(s)	433
Bbv12I	GWGCWC	2 cut(s)	85, 576
BbvI	GCAGC	2 cut(s)	611, 621
BccI	CCATC	1 cut(s)	286
BceAI	ACGGC	2 cut(s)	8, 633
BciT130I	CCWGG	2 cut(s)	129, 705
BclI	TGATCA	1 cut(s)	678
BfrI	CTTAAG	1 cut(s)	629
BisI	GCNGC	6 cut(s)	193, 196, 223, 600, 635, 688
BlsI	GCNGC	6 cut(s)	194, 197, 224, 601, 636, 689
Bme1390I	CCNGG	2 cut(s)	129, 705
BmeT110I	CYCGRG	1 cut(s)	433
BmrFI	CCNGG	2 cut(s)	129, 705
BmsI	GCATC	2 cut(s)	398, 472
BpuEI	CTTGAG	1 cut(s)	608
BsaJI	CCNNGG	2 cut(s)	172, 577
BsaXI	ACNNNNNCTCC	4 cut(s)	319, 349, 685, 715
Bsc4I	CCNNNNNNNGG	3 cut(s)	173, 404, 704
Bse1I	ACTGG	2 cut(s)	293, 548
BseBI	CCWGG	2 cut(s)	129, 705
BseDI	CCNNGG	2 cut(s)	172, 577
BseGI	GGATG	8 cut(s)	100, 124, 278, 378, 413, 442, 514, 654
BseLI	CCNNNNNNNGG	3 cut(s)	173, 404, 704
BseMII	CTCAG	1 cut(s)	107
BseNI	ACTGG	2 cut(s)	293, 548
BseRI	GAGGAG	8 cut(s)	198, 201, 222, 375, 432, 435, 687, 690
BseXI	GCAGC	2 cut(s)	611, 621
BseYI	CCCAGC	1 cut(s)	514
BshFI	GGCC	2 cut(s)	132, 620
BsiHKAI	GWGCWC	2 cut(s)	85, 576
BsiHKCI	CYCGRG	1 cut(s)	433
BslFI	GGGAC	1 cut(s)	552
BslI	CCNNNNNNNGG	3 cut(s)	173, 404, 704
BsmFI	GGGAC	1 cut(s)	552
BsmI	GAATGC	1 cut(s)	562
BsnI	GGCC	2 cut(s)	132, 620
BsoBI	CYCGRG	1 cut(s)	433
Bsp1286I	GDGCHC	2 cut(s)	85, 576
Bsp143I	GATC	1 cut(s)	678
BspANI	GGCC	2 cut(s)	132, 620
BspCNI	CTCAG	1 cut(s)	106
BspHI	TCATGA	1 cut(s)	39
BspQI	GCTCTTC	1 cut(s)	672
BspTI	CTTAAG	1 cut(s)	629
BsrI	ACTGG	2 cut(s)	293, 548
BssECI	CCNNGG	2 cut(s)	172, 577
BssMI	GATC	1 cut(s)	678
BssT1I	CCWWGG	1 cut(s)	577
Bst2UI	CCWGG	2 cut(s)	129, 705
Bst6I	CTCTTC	1 cut(s)	672
BstAFI	CTTAAG	1 cut(s)	629
BstC8I	GCNNGC	1 cut(s)	562
BstDEI	CTNAG	1 cut(s)	93
BstDSI	CCRYGG	1 cut(s)	172
BstEII	GGTNACC	1 cut(s)	257
BstF5I	GGATG	8 cut(s)	100, 124, 278, 378, 413, 442, 514, 654
BstHHI	GCGC	1 cut(s)	487
BstKTI	GATC	1 cut(s)	681
BstMBI	GATC	1 cut(s)	678
BstMWI	GCNNNNNNNGC	3 cut(s)	228, 634, 671
BstNI	CCWGG	2 cut(s)	129, 705
BstPI	GGTNACC	1 cut(s)	257
BstSCI	CCNGG	2 cut(s)	127, 703
BstV1I	GCAGC	2 cut(s)	611, 621
BstXI	CCANNNNNNTGG	1 cut(s)	179
BsuRI	GGCC	2 cut(s)	132, 620
BtgI	CCRYGG	1 cut(s)	172
BtsCI	GGATG	8 cut(s)	100, 124, 278, 378, 413, 442, 514, 654
Cac8I	GCNNGC	1 cut(s)	562
CciI	TCATGA	1 cut(s)	39
CfoI	GCGC	1 cut(s)	487
Csp6I	GTAC	2 cut(s)	90, 367
CspCI	CAANNNNNGTGG	2 cut(s)	220, 255
CviAII	CATG	2 cut(s)	40, 49
CviQI	GTAC	2 cut(s)	90, 367
DdeI	CTNAG	1 cut(s)	93
DpnI	GATC	1 cut(s)	680
DpnII	GATC	1 cut(s)	678
EaeI	YGGCCR	1 cut(s)	618
Eam1104I	CTCTTC	1 cut(s)	672
EarI	CTCTTC	1 cut(s)	672
EciI	GGCGGA	3 cut(s)	240, 438, 708
Eco130I	CCWWGG	1 cut(s)	577
Eco57I	CTGAAG	1 cut(s)	509
Eco88I	CYCGRG	1 cut(s)	433
Eco91I	GGTNACC	1 cut(s)	257
EcoO65I	GGTNACC	1 cut(s)	257
EcoRII	CCWGG	2 cut(s)	127, 703
EcoT14I	CCWWGG	1 cut(s)	577
ErhI	CCWWGG	1 cut(s)	577
FaeI	CATG	2 cut(s)	43, 52
FaiI	YATR	6 cut(s)	41, 50, 531, 623, 692, 715
FalI	AAGNNNNNCTT	2 cut(s)	570, 602
FaqI	GGGAC	1 cut(s)	552
FatI	CATG	2 cut(s)	39, 48
FauI	CCCGC	1 cut(s)	297
FbaI	TGATCA	1 cut(s)	678
FblI	GTMKAC	1 cut(s)	17
Fnu4HI	GCNGC	6 cut(s)	193, 196, 223, 600, 635, 688
FokI	GGATG	8 cut(s)	87, 111, 265, 365, 420, 429, 521, 641
Fsp4HI	GCNGC	6 cut(s)	193, 196, 223, 600, 635, 688
GlaI	GCGC	1 cut(s)	486
GluI	GCNGC	6 cut(s)	193, 196, 223, 600, 635, 688
GsaI	CCCAGC	1 cut(s)	518
HaeIII	GGCC	2 cut(s)	132, 620
HhaI	GCGC	1 cut(s)	487
Hin1II	CATG	2 cut(s)	43, 52
Hin6I	GCGC	1 cut(s)	485
HinP1I	GCGC	1 cut(s)	485
HindIII	AAGCTT	2 cut(s)	75, 672
HinfI	GANTC	1 cut(s)	544
HphI	GGTGA	1 cut(s)	251
Hpy166II	GTNNAC	2 cut(s)	18, 440
Hpy188III	TCNNGA	1 cut(s)	40
Hpy8I	GTNNAC	2 cut(s)	18, 440
HpyAV	CCTTC	2 cut(s)	366, 462
HpyCH4V	TGCA	3 cut(s)	48, 529, 615
HpyF10VI	GCNNNNNNNGC	3 cut(s)	228, 634, 671
HpyF3I	CTNAG	1 cut(s)	93
Hsp92II	CATG	2 cut(s)	43, 52
HspAI	GCGC	1 cut(s)	485
Ksp22I	TGATCA	1 cut(s)	678
Kzo9I	GATC	1 cut(s)	678
LguI	GCTCTTC	1 cut(s)	672
LmnI	GCTCC	2 cut(s)	88, 579
LpnPI	CCDG	9 cut(s)	114, 141, 306, 351, 390, 500, 561, 690, 717
Lsp1109I	GCAGC	2 cut(s)	611, 621
LweI	GCATC	2 cut(s)	398, 472
MaeIII	GTNAC	2 cut(s)	257, 340
MalI	GATC	1 cut(s)	680
MboI	GATC	1 cut(s)	678
MboII	GAAGA	4 cut(s)	22, 28, 643, 659
MhlI	GDGCHC	2 cut(s)	85, 576
MluCI	AATT	4 cut(s)	54, 69, 141, 249
MmeI	TCCRAC	1 cut(s)	413
MseI	TTAA	2 cut(s)	630, 727
MslI	CAYNNNNRTG	2 cut(s)	38, 177
MspCI	CTTAAG	1 cut(s)	629
MspR9I	CCNGG	2 cut(s)	129, 705
Mva1269I	GAATGC	1 cut(s)	562
MvaI	CCWGG	2 cut(s)	129, 705
MwoI	GCNNNNNNNGC	3 cut(s)	228, 634, 671
NdeII	GATC	1 cut(s)	678
NlaIII	CATG	2 cut(s)	43, 52
NmuCI	GTSAC	2 cut(s)	257, 340
OliI	CACNNNNGTG	1 cut(s)	177
PagI	TCATGA	1 cut(s)	39
PciSI	GCTCTTC	1 cut(s)	672
PctI	GAATGC	1 cut(s)	562
PfeI	GAWTC	1 cut(s)	544
PkrI	GCNGC	6 cut(s)	194, 197, 224, 601, 636, 689
Psp6I	CCWGG	2 cut(s)	127, 703
PspEI	GGTNACC	1 cut(s)	257
PspFI	CCCAGC	1 cut(s)	514
PspGI	CCWGG	2 cut(s)	127, 703
RsaI	GTAC	2 cut(s)	91, 368
RsaNI	GTAC	2 cut(s)	90, 367
RseI	CAYNNNNRTG	2 cut(s)	38, 177
SapI	GCTCTTC	1 cut(s)	672
SaqAI	TTAA	2 cut(s)	630, 727
SatI	GCNGC	6 cut(s)	193, 196, 223, 600, 635, 688
Sau3AI	GATC	1 cut(s)	678
ScrFI	CCNGG	2 cut(s)	129, 705
SduI	GDGCHC	2 cut(s)	85, 576
SfaNI	GCATC	2 cut(s)	398, 472
SmiMI	CAYNNNNRTG	2 cut(s)	38, 177
SmlI	CTYRAG	2 cut(s)	587, 629
SmoI	CTYRAG	2 cut(s)	587, 629
Sse9I	AATT	4 cut(s)	54, 69, 141, 249
StyD4I	CCNGG	2 cut(s)	127, 703
StyI	CCWWGG	1 cut(s)	577
TasI	AATT	4 cut(s)	54, 69, 141, 249
TatI	WGTACW	1 cut(s)	89
TauI	GCSGC	4 cut(s)	195, 198, 225, 690
TfiI	GAWTC	1 cut(s)	544
Tru1I	TTAA	2 cut(s)	630, 727
Tru9I	TTAA	2 cut(s)	630, 727
TseFI	GTSAC	2 cut(s)	257, 340
TseI	GCWGC	2 cut(s)	599, 634
Tsp45I	GTSAC	2 cut(s)	257, 340
TspDTI	ATGAA	3 cut(s)	22, 28, 643
TspGWI	ACGGA	1 cut(s)	189
Vha464I	CTTAAG	1 cut(s)	629
XapI	RAATTY	1 cut(s)	141
XmiI	GTMKAC	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.