Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0015789

Physical Location & Seq

Genomic Coordinates Forward (+)

50125711 .. 50126433

Gene Structure 723 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003570

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGATGGGTTCAAAGTCTACTGCCGTGTTCTTTATCTTCTTGATTTGCACGGTAATTGCGTTGCCTCCAATTCAAGCTTGTGCTCCTTGTACTCAGCCTCATCCACCAAAACCGCCTAAACATCATCCAGGCCATTCCAAAATTCCTCCCCACCCCAAACACCCACCACACCACGGAGGCGGCGGCCGAGGTGGAGGCGGAAAAGGAGGAGGCGGCGGCAAAGGAGGTGGAGGTGGAATAGGTGGTCACCCAAAAGTTCCCCCCCCATCCAAAAACCCGCCAGTTGTATCTCCACCAATAATAACACCCCCTATTACTAAACCTCCTGTGACAATCCCACCTCCTTCCCCCTCGTACCCACCTTACGTCCCTCCTCCAACGCCTCCGTGTGCTGGATGCGGTGGAGGAGGTGGCGGAGGAGGTGGCTCGGGTAAACATCCTCCGCCTTCTACTACACCAGCTACTTGTCCTATTGATGCGCTGAAGTTAGGGCTTTGTGTGGATGTGCTGGGTGGTTTGGTGCATATCGGGTTGGGGAATCCAGTTGAGAATGCTTGCTGTCCCGTGCTCCAAGGGTTGCTTGAGCTTGAAGCAGCGATTTGTCTTTGCACGGCCATAAGGCTTAAGCTGCTAAACCTAAACATCTTTATTCCTCTTGCTCTTCAAGCTTTGATCACTTGCGGCATAACTCCTCCTCCTGGTTTTGTATGTCCGCCTCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hydrophob_seed

Protein Analysis

241

Amino Acids

23.79

Weight (kDa)

9.11

Isoelectric Point (pI)

62.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrophob_seed	PF14547	155 - 238	2.7e-25	Hydrophobic seed protein
Tryp_alpha_amyl	PF00234	156 - 237	9.4e-12	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015789)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62500
fragaria_vesca	FvH4_5g00120
malus_domestica	MD04G1087700.v1.1
prunus_persica	Prupe.5G073000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0202811
rosa_laevigata	RLG00000003570
rosa_multiflora	Rmu_sc0002590.1_g000023 Rmu_sc0003429.1_g000016
rosa_roxburghii	Rroxscaffold_3G00254240
rosa_rugosa	Rorug07G0073200
rosa_samantha	Rh7AG201000 Rh7BG201200 Rh7CG212400 Rh7DG207900
rosa_wichuraiana	Rw7G017580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	17
AcoI	YGGCCR	2 cut(s)	184, 612
AcsI	RAATTY	1 cut(s)	141
AcuI	CTGAAG	1 cut(s)	503
AfaI	GTAC	2 cut(s)	91, 356
AfiI	CCNNNNNNNGG	3 cut(s)	173, 392, 698
AflII	CTTAAG	1 cut(s)	623
AgsI	TTSAA	4 cut(s)	12, 74, 590, 665
AjnI	CCWGG	2 cut(s)	127, 697
AluBI	AGCT	5 cut(s)	77, 461, 586, 628, 668
AluI	AGCT	5 cut(s)	77, 461, 586, 628, 668
Alw21I	GWGCWC	2 cut(s)	85, 570
Ama87I	CYCGRG	1 cut(s)	427
AoxI	GGCC	3 cut(s)	130, 184, 612
ApeKI	GCWGC	2 cut(s)	593, 628
ApoI	RAATTY	1 cut(s)	141
AspLEI	GCGC	1 cut(s)	481
AsuHPI	GGTGA	1 cut(s)	239
AvaI	CYCGRG	1 cut(s)	427
Bbv12I	GWGCWC	2 cut(s)	85, 570
BbvI	GCAGC	2 cut(s)	605, 615
BccI	CCATC	1 cut(s)	274
BceAI	ACGGC	2 cut(s)	8, 627
BciT130I	CCWGG	2 cut(s)	129, 699
BclI	TGATCA	1 cut(s)	672
BfrI	CTTAAG	1 cut(s)	623
BisI	GCNGC	7 cut(s)	181, 184, 214, 217, 594, 629, 682
BlsI	GCNGC	7 cut(s)	182, 185, 215, 218, 595, 630, 683
Bme1390I	CCNGG	2 cut(s)	129, 699
BmeT110I	CYCGRG	1 cut(s)	427
BmrFI	CCNGG	2 cut(s)	129, 699
BmsI	GCATC	2 cut(s)	386, 466
BpuEI	CTTGAG	1 cut(s)	602
BsaJI	CCNNGG	3 cut(s)	172, 187, 571
BsaXI	ACNNNNNCTCC	4 cut(s)	307, 337, 679, 709
Bsc4I	CCNNNNNNNGG	3 cut(s)	173, 392, 698
Bse1I	ACTGG	2 cut(s)	281, 542
BseBI	CCWGG	2 cut(s)	129, 699
BseDI	CCNNGG	3 cut(s)	172, 187, 571
BseGI	GGATG	6 cut(s)	100, 124, 266, 401, 436, 508
BseLI	CCNNNNNNNGG	3 cut(s)	173, 392, 698
BseMII	CTCAG	1 cut(s)	107
BseNI	ACTGG	2 cut(s)	281, 542
BseRI	GAGGAG	6 cut(s)	222, 363, 420, 432, 681, 684
BseX3I	CGGCCG	1 cut(s)	184
BseXI	GCAGC	2 cut(s)	605, 615
BseYI	CCCAGC	1 cut(s)	508
Bsh1285I	CGRYCG	1 cut(s)	187
BshFI	GGCC	3 cut(s)	132, 186, 614
BsiEI	CGRYCG	1 cut(s)	187
BsiHKAI	GWGCWC	2 cut(s)	85, 570
BsiHKCI	CYCGRG	1 cut(s)	427
BslFI	GGGAC	2 cut(s)	353, 546
BslI	CCNNNNNNNGG	3 cut(s)	173, 392, 698
BsmFI	GGGAC	2 cut(s)	353, 546
BsmI	GAATGC	1 cut(s)	556
BsnI	GGCC	3 cut(s)	132, 186, 614
BsoBI	CYCGRG	1 cut(s)	427
Bsp1286I	GDGCHC	2 cut(s)	85, 570
Bsp143I	GATC	1 cut(s)	672
BspANI	GGCC	3 cut(s)	132, 186, 614
BspCNI	CTCAG	1 cut(s)	106
BspQI	GCTCTTC	1 cut(s)	666
BspTI	CTTAAG	1 cut(s)	623
BsrI	ACTGG	2 cut(s)	281, 542
BssECI	CCNNGG	3 cut(s)	172, 187, 571
BssMI	GATC	1 cut(s)	672
BssT1I	CCWWGG	1 cut(s)	571
Bst2UI	CCWGG	2 cut(s)	129, 699
Bst4CI	ACNGT	1 cut(s)	52
Bst6I	CTCTTC	1 cut(s)	666
BstAFI	CTTAAG	1 cut(s)	623
BstC8I	GCNNGC	1 cut(s)	556
BstDEI	CTNAG	1 cut(s)	93
BstDSI	CCRYGG	1 cut(s)	172
BstEII	GGTNACC	1 cut(s)	245
BstF5I	GGATG	6 cut(s)	100, 124, 266, 401, 436, 508
BstHHI	GCGC	1 cut(s)	481
BstKTI	GATC	1 cut(s)	675
BstMBI	GATC	1 cut(s)	672
BstMCI	CGRYCG	1 cut(s)	187
BstMWI	GCNNNNNNNGC	2 cut(s)	628, 665
BstNI	CCWGG	2 cut(s)	129, 699
BstPI	GGTNACC	1 cut(s)	245
BstSCI	CCNGG	2 cut(s)	127, 697
BstV1I	GCAGC	2 cut(s)	605, 615
BstZI	CGGCCG	1 cut(s)	184
BsuRI	GGCC	3 cut(s)	132, 186, 614
BtgI	CCRYGG	1 cut(s)	172
BtsCI	GGATG	6 cut(s)	100, 124, 266, 401, 436, 508
Cac8I	GCNNGC	1 cut(s)	556
CfoI	GCGC	1 cut(s)	481
Csp6I	GTAC	2 cut(s)	90, 355
CspCI	CAANNNNNGTGG	2 cut(s)	208, 243
CviQI	GTAC	2 cut(s)	90, 355
DdeI	CTNAG	1 cut(s)	93
DpnI	GATC	1 cut(s)	674
DpnII	GATC	1 cut(s)	672
EaeI	YGGCCR	2 cut(s)	184, 612
EagI	CGGCCG	1 cut(s)	184
Eam1104I	CTCTTC	1 cut(s)	666
EarI	CTCTTC	1 cut(s)	666
EciI	GGCGGA	4 cut(s)	213, 429, 432, 702
EclXI	CGGCCG	1 cut(s)	184
Eco130I	CCWWGG	1 cut(s)	571
Eco52I	CGGCCG	1 cut(s)	184
Eco57I	CTGAAG	1 cut(s)	503
Eco88I	CYCGRG	1 cut(s)	427
Eco91I	GGTNACC	1 cut(s)	245
EcoO65I	GGTNACC	1 cut(s)	245
EcoRII	CCWGG	2 cut(s)	127, 697
EcoT14I	CCWWGG	1 cut(s)	571
ErhI	CCWWGG	1 cut(s)	571
FaiI	YATR	4 cut(s)	525, 617, 686, 709
FalI	AAGNNNNNCTT	2 cut(s)	564, 596
FaqI	GGGAC	2 cut(s)	353, 546
FauI	CCCGC	1 cut(s)	285
FbaI	TGATCA	1 cut(s)	672
FblI	GTMKAC	1 cut(s)	17
Fnu4HI	GCNGC	7 cut(s)	181, 184, 214, 217, 594, 629, 682
FokI	GGATG	6 cut(s)	87, 111, 253, 408, 423, 515
Fsp4HI	GCNGC	7 cut(s)	181, 184, 214, 217, 594, 629, 682
GlaI	GCGC	1 cut(s)	480
GluI	GCNGC	7 cut(s)	181, 184, 214, 217, 594, 629, 682
GsaI	CCCAGC	1 cut(s)	512
HaeIII	GGCC	3 cut(s)	132, 186, 614
HhaI	GCGC	1 cut(s)	481
Hin6I	GCGC	1 cut(s)	479
HinP1I	GCGC	1 cut(s)	479
HindIII	AAGCTT	2 cut(s)	75, 666
HinfI	GANTC	1 cut(s)	538
HphI	GGTGA	1 cut(s)	239
Hpy166II	GTNNAC	2 cut(s)	18, 434
Hpy188III	TCNNGA	1 cut(s)	40
Hpy8I	GTNNAC	2 cut(s)	18, 434
HpyAV	CCTTC	2 cut(s)	354, 456
HpyCH4III	ACNGT	1 cut(s)	52
HpyCH4IV	ACGT	1 cut(s)	366
HpyCH4V	TGCA	3 cut(s)	48, 523, 609
HpyF10VI	GCNNNNNNNGC	2 cut(s)	628, 665
HpyF3I	CTNAG	1 cut(s)	93
HpySE526I	ACGT	1 cut(s)	366
HspAI	GCGC	1 cut(s)	479
Ksp22I	TGATCA	1 cut(s)	672
Kzo9I	GATC	1 cut(s)	672
LguI	GCTCTTC	1 cut(s)	666
LmnI	GCTCC	2 cut(s)	88, 573
Lsp1109I	GCAGC	2 cut(s)	605, 615
LweI	GCATC	2 cut(s)	386, 466
MaeII	ACGT	1 cut(s)	366
MaeIII	GTNAC	2 cut(s)	245, 328
MalI	GATC	1 cut(s)	674
MboI	GATC	1 cut(s)	672
MboII	GAAGA	2 cut(s)	28, 653
MhlI	GDGCHC	2 cut(s)	85, 570
MluCI	AATT	3 cut(s)	54, 69, 141
MmeI	TCCRAC	1 cut(s)	401
MseI	TTAA	2 cut(s)	624, 721
MspCI	CTTAAG	1 cut(s)	623
MspR9I	CCNGG	2 cut(s)	129, 699
Mva1269I	GAATGC	1 cut(s)	556
MvaI	CCWGG	2 cut(s)	129, 699
MwoI	GCNNNNNNNGC	2 cut(s)	628, 665
NdeII	GATC	1 cut(s)	672
NmeAIII	GCCGAG	1 cut(s)	212
NmuCI	GTSAC	2 cut(s)	245, 328
PciSI	GCTCTTC	1 cut(s)	666
PcsI	WCGNNNNNNNCGW	1 cut(s)	56
PctI	GAATGC	1 cut(s)	556
PfeI	GAWTC	1 cut(s)	538
PkrI	GCNGC	7 cut(s)	182, 185, 215, 218, 595, 630, 683
Psp6I	CCWGG	2 cut(s)	127, 697
PspEI	GGTNACC	1 cut(s)	245
PspFI	CCCAGC	1 cut(s)	508
PspGI	CCWGG	2 cut(s)	127, 697
RsaI	GTAC	2 cut(s)	91, 356
RsaNI	GTAC	2 cut(s)	90, 355
SapI	GCTCTTC	1 cut(s)	666
SaqAI	TTAA	2 cut(s)	624, 721
SatI	GCNGC	7 cut(s)	181, 184, 214, 217, 594, 629, 682
Sau3AI	GATC	1 cut(s)	672
ScrFI	CCNGG	2 cut(s)	129, 699
SduI	GDGCHC	2 cut(s)	85, 570
SfaNI	GCATC	2 cut(s)	386, 466
SmlI	CTYRAG	2 cut(s)	581, 623
SmoI	CTYRAG	2 cut(s)	581, 623
Sse9I	AATT	3 cut(s)	54, 69, 141
StyD4I	CCNGG	2 cut(s)	127, 697
StyI	CCWWGG	1 cut(s)	571
TaaI	ACNGT	1 cut(s)	52
TaiI	ACGT	1 cut(s)	369
TasI	AATT	3 cut(s)	54, 69, 141
TatI	WGTACW	1 cut(s)	89
TauI	GCSGC	5 cut(s)	183, 186, 216, 219, 684
TfiI	GAWTC	1 cut(s)	538
Tru1I	TTAA	2 cut(s)	624, 721
Tru9I	TTAA	2 cut(s)	624, 721
TseFI	GTSAC	2 cut(s)	245, 328
TseI	GCWGC	2 cut(s)	593, 628
Tsp45I	GTSAC	2 cut(s)	245, 328
TspGWI	ACGGA	2 cut(s)	189, 375
Vha464I	CTTAAG	1 cut(s)	623
XapI	RAATTY	1 cut(s)	141
XmiI	GTMKAC	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.