Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0015789

Physical Location & Seq

Genomic Coordinates Reverse (-)

19203109 .. 19205032

Gene Structure 1924 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG212400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGATGGGTTCAAAGTCTACTGCCGTGTTCTTCATCTTCTTGATTTGCATGGTAATTGCGTTGCCACCAATTCAAGCTTGTGCTCCTTGTACTCAGCCTCATCCACCAAAACCGCCTAAACATCATCCAGGCCATTCCAAAATTCCTCCCCACCCCAAACACCCACCACACCACGGAGGTGGAGGAGGAAAAGGAGGCGGCGGCAAAGGAGGTGGAGGTGGAATTGGTGGTCACCCAAAAGTTCCCCCCCCATCCGAAAACCCACCAGTTGTATCTCCACCAATAATAACACCCCCTATTACTAAACCTCCTGTGACAATCCCACCTCCTTCCCCCTTGTACCCACCTTACATCCCTCCTCCAAAGCCTCCTTGTGCTGGATGCGGCGGAGGAGGAGGAGGTGGCTCGGGTAAACATCCTCCGCCTTCTACTACACCAGCTACTTGTCCTATTGATGCGCTGAAGTTAGGGCTTTGTGTGGATGTGCTGGGTGGTTTGGTGCATATCGGGTTGGGGAATCCAGTTGAGAATGCTTGCTGTCCAGTGCTCCAAGGGTTGCTTGAGCTTGAAGCAGCGATTTGTCTTTGCACGGCCATAAGGCTTAAGCTGCTAAACCTAAACATCTTCATTCCTCTTGCTCTTCAAGCTTTGATCACTTGCGGCATAACTCCTCCTCCTGGTTTTGTATGTCCGCCTCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hydrophob_seed

Protein Analysis

233

Amino Acids

23.39

Weight (kDa)

8.92

Isoelectric Point (pI)

60.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrophob_seed	PF14547	148 - 231	2.6e-25	Hydrophobic seed protein
Tryp_alpha_amyl	PF00234	149 - 230	8.8e-12	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0015789)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62500
fragaria_vesca	FvH4_5g00120
malus_domestica	MD04G1087700.v1.1
prunus_persica	Prupe.5G073000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0202811
rosa_laevigata	RLG00000003570
rosa_multiflora	Rmu_sc0002590.1_g000023 Rmu_sc0003429.1_g000016
rosa_roxburghii	Rroxscaffold_3G00254240
rosa_rugosa	Rorug07G0073200
rosa_samantha	Rh7AG201000 Rh7BG201200 Rh7CG212400 Rh7DG207900
rosa_wichuraiana	Rw7G017580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	17
AciI	CCGC	8 cut(s)	113, 198, 201, 384, 387, 422, 660, 692
AcoI	YGGCCR	1 cut(s)	591
AcsI	RAATTY	1 cut(s)	141
AcuI	CTGAAG	1 cut(s)	482
AfaI	GTAC	2 cut(s)	91, 341
AfiI	CCNNNNNNNGG	3 cut(s)	173, 377, 677
AflII	CTTAAG	1 cut(s)	602
AgsI	TTSAA	4 cut(s)	12, 74, 569, 644
AjnI	CCWGG	2 cut(s)	127, 676
AleI	CACNNNNGTG	1 cut(s)	177
AluBI	AGCT	5 cut(s)	77, 440, 565, 607, 647
AluI	AGCT	5 cut(s)	77, 440, 565, 607, 647
Alw21I	GWGCWC	2 cut(s)	85, 549
Ama87I	CYCGRG	1 cut(s)	406
AoxI	GGCC	2 cut(s)	130, 591
ApeKI	GCWGC	2 cut(s)	572, 607
ApoI	RAATTY	1 cut(s)	141
AspLEI	GCGC	1 cut(s)	460
AsuHPI	GGTGA	1 cut(s)	224
AvaI	CYCGRG	1 cut(s)	406
Bbv12I	GWGCWC	2 cut(s)	85, 549
BbvI	GCAGC	2 cut(s)	584, 594
BccI	CCATC	1 cut(s)	259
BceAI	ACGGC	2 cut(s)	8, 606
BciT130I	CCWGG	2 cut(s)	129, 678
BclI	TGATCA	1 cut(s)	651
BfrI	CTTAAG	1 cut(s)	602
BisI	GCNGC	6 cut(s)	199, 202, 385, 573, 608, 661
BlsI	GCNGC	6 cut(s)	200, 203, 386, 574, 609, 662
Bme1390I	CCNGG	2 cut(s)	129, 678
BmeT110I	CYCGRG	1 cut(s)	406
BmrFI	CCNGG	2 cut(s)	129, 678
BmsI	GCATC	2 cut(s)	371, 445
BpuEI	CTTGAG	1 cut(s)	581
BsaJI	CCNNGG	2 cut(s)	172, 550
BsaXI	ACNNNNNCTCC	4 cut(s)	292, 322, 658, 688
Bsc4I	CCNNNNNNNGG	3 cut(s)	173, 377, 677
Bse1I	ACTGG	3 cut(s)	266, 521, 542
BseBI	CCWGG	2 cut(s)	129, 678
BseDI	CCNNGG	2 cut(s)	172, 550
BseGI	GGATG	7 cut(s)	100, 124, 251, 351, 386, 415, 487
BseLI	CCNNNNNNNGG	3 cut(s)	173, 377, 677
BseMII	CTCAG	1 cut(s)	107
BseNI	ACTGG	3 cut(s)	266, 521, 542
BseRI	GAGGAG	7 cut(s)	198, 348, 405, 408, 411, 660, 663
BseXI	GCAGC	2 cut(s)	584, 594
BseYI	CCCAGC	1 cut(s)	487
BshFI	GGCC	2 cut(s)	132, 593
BsiHKAI	GWGCWC	2 cut(s)	85, 549
BsiHKCI	CYCGRG	1 cut(s)	406
BslI	CCNNNNNNNGG	3 cut(s)	173, 377, 677
BsmI	GAATGC	1 cut(s)	535
BsnI	GGCC	2 cut(s)	132, 593
BsoBI	CYCGRG	1 cut(s)	406
Bsp1286I	GDGCHC	2 cut(s)	85, 549
Bsp143I	GATC	1 cut(s)	651
BspACI	CCGC	8 cut(s)	113, 198, 201, 384, 387, 422, 660, 692
BspANI	GGCC	2 cut(s)	132, 593
BspCNI	CTCAG	1 cut(s)	106
BspQI	GCTCTTC	1 cut(s)	645
BspTI	CTTAAG	1 cut(s)	602
BsrI	ACTGG	3 cut(s)	266, 521, 542
BssECI	CCNNGG	2 cut(s)	172, 550
BssMI	GATC	1 cut(s)	651
BssT1I	CCWWGG	1 cut(s)	550
Bst2UI	CCWGG	2 cut(s)	129, 678
Bst6I	CTCTTC	1 cut(s)	645
BstAFI	CTTAAG	1 cut(s)	602
BstC8I	GCNNGC	1 cut(s)	535
BstDEI	CTNAG	1 cut(s)	93
BstDSI	CCRYGG	1 cut(s)	172
BstEII	GGTNACC	1 cut(s)	230
BstF5I	GGATG	7 cut(s)	100, 124, 251, 351, 386, 415, 487
BstHHI	GCGC	1 cut(s)	460
BstKTI	GATC	1 cut(s)	654
BstMBI	GATC	1 cut(s)	651
BstMWI	GCNNNNNNNGC	2 cut(s)	607, 644
BstNI	CCWGG	2 cut(s)	129, 678
BstPI	GGTNACC	1 cut(s)	230
BstSCI	CCNGG	2 cut(s)	127, 676
BstV1I	GCAGC	2 cut(s)	584, 594
BstXI	CCANNNNNNTGG	1 cut(s)	179
BsuRI	GGCC	2 cut(s)	132, 593
BtgI	CCRYGG	1 cut(s)	172
BtsCI	GGATG	7 cut(s)	100, 124, 251, 351, 386, 415, 487
BtsIMutI	CAGTG	1 cut(s)	549
Cac8I	GCNNGC	1 cut(s)	535
CfoI	GCGC	1 cut(s)	460
Csp6I	GTAC	2 cut(s)	90, 340
CspCI	CAANNNNNGTGG	2 cut(s)	193, 228
CviAII	CATG	1 cut(s)	49
CviQI	GTAC	2 cut(s)	90, 340
DdeI	CTNAG	1 cut(s)	93
DpnI	GATC	1 cut(s)	653
DpnII	GATC	1 cut(s)	651
EaeI	YGGCCR	1 cut(s)	591
Eam1104I	CTCTTC	1 cut(s)	645
EarI	CTCTTC	1 cut(s)	645
EciI	GGCGGA	3 cut(s)	402, 411, 681
Eco130I	CCWWGG	1 cut(s)	550
Eco57I	CTGAAG	1 cut(s)	482
Eco88I	CYCGRG	1 cut(s)	406
Eco91I	GGTNACC	1 cut(s)	230
EcoO65I	GGTNACC	1 cut(s)	230
EcoRII	CCWGG	2 cut(s)	127, 676
EcoT14I	CCWWGG	1 cut(s)	550
ErhI	CCWWGG	1 cut(s)	550
FaeI	CATG	1 cut(s)	52
FaiI	YATR	5 cut(s)	50, 504, 596, 665, 688
FalI	AAGNNNNNCTT	2 cut(s)	543, 575
FatI	CATG	1 cut(s)	48
FbaI	TGATCA	1 cut(s)	651
FblI	GTMKAC	1 cut(s)	17
Fnu4HI	GCNGC	6 cut(s)	199, 202, 385, 573, 608, 661
FokI	GGATG	7 cut(s)	87, 111, 238, 338, 393, 402, 494
Fsp4HI	GCNGC	6 cut(s)	199, 202, 385, 573, 608, 661
GlaI	GCGC	1 cut(s)	459
GluI	GCNGC	6 cut(s)	199, 202, 385, 573, 608, 661
GsaI	CCCAGC	1 cut(s)	491
HaeIII	GGCC	2 cut(s)	132, 593
HhaI	GCGC	1 cut(s)	460
Hin1II	CATG	1 cut(s)	52
Hin6I	GCGC	1 cut(s)	458
HinP1I	GCGC	1 cut(s)	458
HindIII	AAGCTT	2 cut(s)	75, 645
HinfI	GANTC	1 cut(s)	517
HphI	GGTGA	1 cut(s)	224
Hpy166II	GTNNAC	2 cut(s)	18, 413
Hpy188I	TCNGA	1 cut(s)	256
Hpy188III	TCNNGA	1 cut(s)	40
Hpy8I	GTNNAC	2 cut(s)	18, 413
HpyAV	CCTTC	2 cut(s)	339, 435
HpyCH4V	TGCA	3 cut(s)	48, 502, 588
HpyF10VI	GCNNNNNNNGC	2 cut(s)	607, 644
HpyF3I	CTNAG	1 cut(s)	93
Hsp92II	CATG	1 cut(s)	52
HspAI	GCGC	1 cut(s)	458
Ksp22I	TGATCA	1 cut(s)	651
Kzo9I	GATC	1 cut(s)	651
LguI	GCTCTTC	1 cut(s)	645
LmnI	GCTCC	2 cut(s)	88, 552
Lsp1109I	GCAGC	2 cut(s)	584, 594
LweI	GCATC	2 cut(s)	371, 445
MaeIII	GTNAC	2 cut(s)	230, 313
MalI	GATC	1 cut(s)	653
MboI	GATC	1 cut(s)	651
MboII	GAAGA	4 cut(s)	22, 28, 616, 632
MhlI	GDGCHC	2 cut(s)	85, 549
MluCI	AATT	4 cut(s)	54, 69, 141, 222
MseI	TTAA	2 cut(s)	603, 700
MslI	CAYNNNNRTG	1 cut(s)	177
MspCI	CTTAAG	1 cut(s)	602
MspR9I	CCNGG	2 cut(s)	129, 678
Mva1269I	GAATGC	1 cut(s)	535
MvaI	CCWGG	2 cut(s)	129, 678
MwoI	GCNNNNNNNGC	2 cut(s)	607, 644
NdeII	GATC	1 cut(s)	651
NlaIII	CATG	1 cut(s)	52
NmuCI	GTSAC	2 cut(s)	230, 313
OliI	CACNNNNGTG	1 cut(s)	177
PciSI	GCTCTTC	1 cut(s)	645
PctI	GAATGC	1 cut(s)	535
PfeI	GAWTC	1 cut(s)	517
PkrI	GCNGC	6 cut(s)	200, 203, 386, 574, 609, 662
Psp6I	CCWGG	2 cut(s)	127, 676
PspEI	GGTNACC	1 cut(s)	230
PspFI	CCCAGC	1 cut(s)	487
PspGI	CCWGG	2 cut(s)	127, 676
RsaI	GTAC	2 cut(s)	91, 341
RsaNI	GTAC	2 cut(s)	90, 340
RseI	CAYNNNNRTG	1 cut(s)	177
SapI	GCTCTTC	1 cut(s)	645
SaqAI	TTAA	2 cut(s)	603, 700
SatI	GCNGC	6 cut(s)	199, 202, 385, 573, 608, 661
Sau3AI	GATC	1 cut(s)	651
ScrFI	CCNGG	2 cut(s)	129, 678
SduI	GDGCHC	2 cut(s)	85, 549
SfaNI	GCATC	2 cut(s)	371, 445
SmiMI	CAYNNNNRTG	1 cut(s)	177
SmlI	CTYRAG	2 cut(s)	560, 602
SmoI	CTYRAG	2 cut(s)	560, 602
Sse9I	AATT	4 cut(s)	54, 69, 141, 222
SsiI	CCGC	8 cut(s)	113, 198, 201, 384, 387, 422, 660, 692
StyD4I	CCNGG	2 cut(s)	127, 676
StyI	CCWWGG	1 cut(s)	550
TasI	AATT	4 cut(s)	54, 69, 141, 222
TatI	WGTACW	1 cut(s)	89
TauI	GCSGC	4 cut(s)	201, 204, 387, 663
TfiI	GAWTC	1 cut(s)	517
Tru1I	TTAA	2 cut(s)	603, 700
Tru9I	TTAA	2 cut(s)	603, 700
TscAI	CASTG	1 cut(s)	549
TseFI	GTSAC	2 cut(s)	230, 313
TseI	GCWGC	2 cut(s)	572, 607
Tsp45I	GTSAC	2 cut(s)	230, 313
TspDTI	ATGAA	2 cut(s)	22, 616
TspGWI	ACGGA	1 cut(s)	189
TspRI	CASTG	1 cut(s)	549
Vha464I	CTTAAG	1 cut(s)	602
XapI	RAATTY	1 cut(s)	141
XmiI	GTMKAC	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.