AT1G63650
BHLH Family

Transcription factor

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
23599413 .. 23603164
3752 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G63650.2

Sequence Viewer

Length: 1791 bp
ATGGCAACCGGAGAAAACAGAACGGTGCCGGACAATCTAAAGAAACAGCTCGCAGTTTCAGTTCGAAACATTCAATGGAGTTATGGAATCTTCTGGTCTGTCTCTGCTTCTCAACCAGGAGTGTTGGAGTGGGGAGATGGATATTACAATGGAGACATAAAGACAAGGAAGACGATTCAAGCAGCAGAAGTCAAAATTGACCAGTTAGGTCTTGAGAGAAGTGAGCAGCTTAGAGAGCTTTATGAATCTCTCTCCCTCGCTGAATCCTCAGCTTCCGGTAGCTCTCAGGTCACTAGACGAGCTTCCGCCGCCGCTCTCTCACCGGAGGACCTCACCGACACCGAGTGGTACTACTTAGTATGCATGTCTTTCGTCTTCAACATCGGTGAAGGAATCCCCGGAGGAGCGTTATCCAATGGAGAACCAATATGGCTTTGTAACGCTGAAACCGCCGATAGCAAAGTCTTCACTCGTTCTCTTCTAGCTAAAAGTGCTTCGCTTCAGACAGTGGTTTGCTTCCCGTTTCTTGGAGGAGTCCTTGAGATTGGCACGACCGAACATATTAAAGAGGACATGAACGTGATACAAAGTGTTAAGACGTTGTTCCTTGAAGCTCCTCCATATACTACAATATCGACAAGATCAGACTATCAAGAAATTTTTGATCCCTTAAGTGACGATAAATACACTCCGGTGTTTATAACCGAAGCTTTTCCAACAACTTCTACTAGCGGGTTTGAGCAAGAACCTGAGGATCATGATTCGTTCATCAACGATGGTGGTGCGTCTCAGGTACAAAGCTGGCAGTTTGTGGGTGAAGAAATCAGTAACTGCATTCACCAATCGTTAAATTCAAGCGATTGCGTTTCCCAAACGTTTGTTGGAACAACCGGGAGACTTGCTTGCGATCCAAGGAAGAGTAGGATTCAACGGTTAGGTCAGATTCAAGAACAGAGTAACCATGTAAATATGGACGACGATGTTCATTACCAAGGCGTGATATCGACGATTTTCAAAACAACGCATCAGCTAATACTCGGACCGCAGTTTCAGAACTTCGATAAGCGGTCTAGCTTCACAAGGTGGAAGCGATCATCATCTGTGAAAACATTGGGAGAGAAATCGCAGAAGATGATAAAGAAGATACTCTTCGAGGTTCCTTTGATGAACAAGAAAGAAGAGTTGTTACCGGACACACCAGAGGAAACCGGGAACCATGCCTTGTCCGAGAAGAAACGCCGCGAGAAATTGAATGAACGGTTTATGACATTGAGATCAATCATTCCCTCAATTAGTAAGATTGATAAAGTGTCGATTCTTGATGATACAATTGAGTATCTTCAAGATTTACAGAAACGGGTTCAAGAGTTGGAATCTTGTAGAGAATCTGCTGATACAGAGACACGGATAACGATGATGAAGAGGAAGAAACCGGATGATGAGGAGGAAAGAGCATCAGCGAATTGTATGAACAGCAAAAGGAAGGGGAGTGATGTGAATGTAGGAGAAGATGAACCAGCTGATATCGGTTATGCTGGTCTAACGGATAACTTAAGGATCAGTTCATTAGGTAACGAGGTGGTTATTGAGCTTAGATGCGCTTGGAGAGAAGGGATATTGCTTGAGATAATGGATGTGATTAGTGATCTCAACTTGGATTCTCACTCGGTTCAGTCGTCAACCGGAGACGGTTTACTCTGCTTAACTGTCAATTGCAAGCATAAAGGGACAAAAATAGCAACAACAGGAATGATCCAAGAGGCACTTCAAAGGGTTGCATGGATATGTTAA

Protein Analysis

596

Amino Acids

66.62

Weight (kDa)

5.06

Isoelectric Point (pI)

53.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bHLH-MYC_N PF14215 13 - 202 3.8e-53 bHLH-MYC and R2R3-MYB transcription factors N-terminal
HLH PF00010 405 - 451 1.9e-13 Helix-loop-helix DNA-binding domain
bHLH-TF_ACT-like_plant PF22754 517 - 593 7.3e-18 Plant bHLH transcription factor, ACT-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 701
AccB1I GGYRCC 1 cut(s) 25
AccBSI CCGCTC 1 cut(s) 314
AccII CGCG 1 cut(s) 1242
AciI CCGC 8 cut(s) 306, 309, 312, 450, 732, 1043, 1066, 1240
AclI AACGTT 1 cut(s) 875
AclWI GGATC 5 cut(s) 659, 762, 902, 1565, 1747
AcsI RAATTY 2 cut(s) 657, 850
AcuI CTGAAG 1 cut(s) 485
AdeI CACNNNGTG 2 cut(s) 345, 1083
AfaI GTAC 2 cut(s) 350, 795
AfiI CCNNNNNNNGG 1 cut(s) 527
AflII CTTAAG 2 cut(s) 670, 1552
AjnI CCWGG 1 cut(s) 115
AjuI GAANNNNNNNTTGG 2 cut(s) 1749, 1781
AleI CACNNNNGTG 1 cut(s) 692
Alw26I GTCTC 6 cut(s) 106, 147, 792, 889, 1394, 1680
AlwI GGATC 5 cut(s) 659, 762, 902, 1565, 1747
AlwNI CAGNNNCTG 1 cut(s) 831
ApeKI GCWGC 2 cut(s) 182, 226
ApoI RAATTY 2 cut(s) 657, 850
Asp700I GAANNNNTTC 1 cut(s) 711
AspLEI GCGC 1 cut(s) 1601
AspS9I GGNCC 2 cut(s) 328, 1040
AsuC2I CCSGG 3 cut(s) 399, 892, 1210
AsuHPI GGTGA 5 cut(s) 312, 325, 398, 827, 830
AsuII TTCGAA 1 cut(s) 64
AvaII GGWCC 2 cut(s) 328, 1040
AxyI CCTNAGG 1 cut(s) 750
BanI GGYRCC 1 cut(s) 25
BarI GAAGNNNNNNTAC 2 cut(s) 1170, 1202
BbsI GAAGAC 3 cut(s) 176, 367, 457
BbvCI CCTCAGC 1 cut(s) 268
BbvI GCAGC 2 cut(s) 194, 238
BccI CCATC 2 cut(s) 131, 770
BcgI CGANNNNNNTGC 4 cut(s) 352, 386, 764, 798
BciT130I CCWGG 1 cut(s) 117
BcnI CCSGG 3 cut(s) 399, 892, 1210
BcoDI GTCTC 6 cut(s) 106, 147, 792, 889, 1394, 1680
BfaI CTAG 4 cut(s) 294, 482, 729, 1071
BfrI CTTAAG 2 cut(s) 670, 1552
BisI GCNGC 5 cut(s) 183, 227, 309, 312, 1240
BlsI GCNGC 5 cut(s) 184, 228, 310, 313, 1241
Bme1390I CCNGG 4 cut(s) 117, 399, 892, 1210
Bme18I GGWCC 2 cut(s) 328, 1040
BmgT120I GGNCC 2 cut(s) 328, 1040
BmiI GGNNCC 3 cut(s) 27, 1158, 1214
BmrFI CCNGG 4 cut(s) 117, 399, 892, 1210
BmsI GCATC 3 cut(s) 1033, 1463, 1586
BpiI GAAGAC 3 cut(s) 176, 367, 457
Bpu10I CCTNAGC 1 cut(s) 268
Bpu14I TTCGAA 1 cut(s) 64
BpuEI CTTGAG 3 cut(s) 233, 560, 1643
BpuMI CCSGG 3 cut(s) 399, 892, 1210
BsaBI GATNNNNATC 1 cut(s) 1096
BsaJI CCNNGG 3 cut(s) 397, 911, 991
BsaWI WCCGGW 7 cut(s) 8, 275, 322, 691, 1189, 1432, 1682
Bsc4I CCNNNNNNNGG 1 cut(s) 527
Bse1I ACTGG 1 cut(s) 202
Bse21I CCTNAGG 1 cut(s) 750
Bse8I GATNNNNATC 1 cut(s) 1096
BseBI CCWGG 1 cut(s) 117
BseDI CCNNGG 3 cut(s) 397, 911, 991
BseGI GGATG 2 cut(s) 1441, 1639
BseJI GATNNNNATC 1 cut(s) 1096
BseLI CCNNNNNNNGG 1 cut(s) 527
BseMII CTCAG 4 cut(s) 282, 299, 741, 803
BseNI ACTGG 1 cut(s) 202
BseRI GAGGAG 4 cut(s) 417, 546, 606, 1457
BseXI GCAGC 2 cut(s) 194, 238
Bsh1236I CGCG 1 cut(s) 1242
Bsh1285I CGRYCG 1 cut(s) 555
BshNI GGYRCC 1 cut(s) 25
BsiEI CGRYCG 1 cut(s) 555
BslFI GGGAC 1 cut(s) 1741
BslI CCNNNNNNNGG 1 cut(s) 527
BsmAI GTCTC 6 cut(s) 106, 147, 792, 889, 1394, 1680
BsmBI CGTCTC 2 cut(s) 792, 1680
BsmFI GGGAC 1 cut(s) 1741
BsmI GAATGC 1 cut(s) 834
Bsp119I TTCGAA 1 cut(s) 64
Bsp143I GATC 9 cut(s) 641, 664, 754, 907, 1091, 1274, 1557, 1645, 1752
BspACI CCGC 8 cut(s) 306, 309, 312, 450, 732, 1043, 1066, 1240
BspCNI CTCAG 4 cut(s) 281, 298, 742, 802
BspFNI CGCG 1 cut(s) 1242
BspHI TCATGA 1 cut(s) 757
BspLI GGNNCC 3 cut(s) 27, 1158, 1214
BspPI GGATC 5 cut(s) 659, 762, 902, 1565, 1747
BspT104I TTCGAA 1 cut(s) 64
BspT107I GGYRCC 1 cut(s) 25
BspTI CTTAAG 2 cut(s) 670, 1552
BsrBI CCGCTC 1 cut(s) 314
BsrI ACTGG 1 cut(s) 202
BssECI CCNNGG 3 cut(s) 397, 911, 991
BssMI GATC 9 cut(s) 641, 664, 754, 907, 1091, 1274, 1557, 1645, 1752
BssT1I CCWWGG 2 cut(s) 911, 991
Bst2UI CCWGG 1 cut(s) 117
Bst4CI ACNGT 6 cut(s) 25, 508, 933, 1260, 1691, 1708
Bst6I CTCTTC 5 cut(s) 483, 911, 1154, 1173, 1415
BstAFI CTTAAG 2 cut(s) 670, 1552
BstBI TTCGAA 1 cut(s) 64
BstC8I GCNNGC 4 cut(s) 51, 803, 904, 1718
BstDEI CTNAG 7 cut(s) 230, 268, 285, 355, 750, 789, 1592
BstF5I GGATG 2 cut(s) 1441, 1639
BstFNI CGCG 1 cut(s) 1242
BstHHI GCGC 1 cut(s) 1601
BstKTI GATC 9 cut(s) 644, 667, 757, 910, 1094, 1277, 1560, 1648, 1755
BstMAI GTCTC 6 cut(s) 106, 147, 792, 889, 1394, 1680
BstMBI GATC 9 cut(s) 641, 664, 754, 907, 1091, 1274, 1557, 1645, 1752
BstMCI CGRYCG 1 cut(s) 555
BstMWI GCNNNNNNNGC 4 cut(s) 235, 308, 449, 491
BstNI CCWGG 1 cut(s) 117
BstNSI RCATGY 1 cut(s) 367
BstSCI CCNGG 4 cut(s) 115, 397, 890, 1208
BstUI CGCG 1 cut(s) 1242
BstV1I GCAGC 2 cut(s) 194, 238
BstV2I GAAGAC 3 cut(s) 176, 367, 457
Bsu36I CCTNAGG 1 cut(s) 750
BtsCI GGATG 2 cut(s) 1441, 1639
BtsIMutI CAGTG 1 cut(s) 513
Cac8I GCNNGC 4 cut(s) 51, 803, 904, 1718
CaiI CAGNNNCTG 1 cut(s) 831
CciI TCATGA 1 cut(s) 757
CfoI GCGC 1 cut(s) 1601
Cfr13I GGNCC 2 cut(s) 328, 1040
CpoI CGGWCCG 1 cut(s) 1040
CseI GACGC 1 cut(s) 774
Csp6I GTAC 2 cut(s) 349, 794
CspCI CAANNNNNGTGG 2 cut(s) 760, 795
CspI CGGWCCG 1 cut(s) 1040
CviAII CATG 6 cut(s) 364, 574, 758, 962, 1217, 1779
CviQI GTAC 2 cut(s) 349, 794
DdeI CTNAG 7 cut(s) 230, 268, 285, 355, 750, 789, 1592
DpnI GATC 9 cut(s) 643, 666, 756, 909, 1093, 1276, 1559, 1647, 1754
DpnII GATC 9 cut(s) 641, 664, 754, 907, 1091, 1274, 1557, 1645, 1752
DraIII CACNNNGTG 2 cut(s) 345, 1083
Eam1104I CTCTTC 5 cut(s) 483, 911, 1154, 1173, 1415
EarI CTCTTC 5 cut(s) 483, 911, 1154, 1173, 1415
EciI GGCGGA 1 cut(s) 295
Eco130I CCWWGG 2 cut(s) 911, 991
Eco32I GATATC 2 cut(s) 1002, 1525
Eco47I GGWCC 2 cut(s) 328, 1040
Eco57I CTGAAG 1 cut(s) 485
Eco81I CCTNAGG 1 cut(s) 750
EcoO109I RGGNCCY 1 cut(s) 328
EcoRII CCWGG 1 cut(s) 115
EcoRV GATATC 2 cut(s) 1002, 1525
EcoT14I CCWWGG 2 cut(s) 911, 991
EcoT22I ATGCAT 1 cut(s) 365
ErhI CCWWGG 2 cut(s) 911, 991
Esp3I CGTCTC 2 cut(s) 792, 1680
FaeI CATG 6 cut(s) 367, 577, 761, 965, 1220, 1782
FalI AAGNNNNNCTT 4 cut(s) 1133, 1165, 1749, 1781
FaqI GGGAC 1 cut(s) 1741
FatI CATG 6 cut(s) 363, 573, 757, 961, 1216, 1778
FauI CCCGC 1 cut(s) 725
Fnu4HI GCNGC 5 cut(s) 183, 227, 309, 312, 1240
FokI GGATG 2 cut(s) 1448, 1646
Fsp4HI GCNGC 5 cut(s) 183, 227, 309, 312, 1240
FspBI CTAG 4 cut(s) 294, 482, 729, 1071
GlaI GCGC 1 cut(s) 1600
GluI GCNGC 5 cut(s) 183, 227, 309, 312, 1240
HgaI GACGC 1 cut(s) 774
HhaI GCGC 1 cut(s) 1601
Hin1II CATG 6 cut(s) 367, 577, 761, 965, 1220, 1782
Hin6I GCGC 1 cut(s) 1599
HinP1I GCGC 1 cut(s) 1599
HincII GTYRAC 1 cut(s) 1680
HindII GTYRAC 1 cut(s) 1680
HindIII AAGCTT 1 cut(s) 708
HphI GGTGA 5 cut(s) 312, 325, 398, 827, 830
Hpy166II GTNNAC 2 cut(s) 1680, 1694
Hpy188I TCNGA 6 cut(s) 504, 646, 942, 1040, 1053, 1228
Hpy188III TCNNGA 7 cut(s) 212, 653, 758, 947, 1319, 1343, 1364
Hpy8I GTNNAC 2 cut(s) 1680, 1694
Hpy99I CGWCG 2 cut(s) 980, 1009
HpyAV CCTTC 3 cut(s) 383, 1477, 1604
HpyCH4III ACNGT 6 cut(s) 25, 508, 933, 1260, 1691, 1708
HpyCH4IV ACGT 3 cut(s) 579, 599, 875
HpyCH4V TGCA 4 cut(s) 363, 834, 1716, 1778
HpyF10VI GCNNNNNNNGC 4 cut(s) 235, 308, 449, 491
HpyF3I CTNAG 7 cut(s) 230, 268, 285, 355, 750, 789, 1592
HpySE526I ACGT 3 cut(s) 579, 599, 875
Hsp92II CATG 6 cut(s) 367, 577, 761, 965, 1220, 1782
HspAI GCGC 1 cut(s) 1599
Kzo9I GATC 9 cut(s) 641, 664, 754, 907, 1091, 1274, 1557, 1645, 1752
LmnI GCTCC 2 cut(s) 404, 619
Lsp1109I GCAGC 2 cut(s) 194, 238
LweI GCATC 3 cut(s) 1033, 1463, 1586
MaeI CTAG 4 cut(s) 294, 482, 729, 1071
MaeII ACGT 3 cut(s) 579, 599, 875
MaeIII GTNAC 7 cut(s) 289, 437, 674, 827, 956, 1185, 1571
MalI GATC 9 cut(s) 643, 666, 756, 909, 1093, 1276, 1559, 1647, 1754
MbiI CCGCTC 1 cut(s) 314
MboI GATC 9 cut(s) 641, 664, 754, 907, 1091, 1274, 1557, 1645, 1752
MfeI CAATTG 2 cut(s) 1329, 1711
MluCI AATT 8 cut(s) 195, 657, 850, 1247, 1290, 1329, 1462, 1711
MlyI GAGTC 1 cut(s) 543
MmeI TCCRAC 4 cut(s) 105, 740, 862, 1350
Mph1103I ATGCAT 1 cut(s) 365
MroXI GAANNNNTTC 1 cut(s) 711
MseI TTAA 7 cut(s) 564, 594, 671, 848, 1553, 1703, 1789
MslI CAYNNNNRTG 3 cut(s) 578, 692, 1783
MspA1I CMGCKG 1 cut(s) 1520
MspCI CTTAAG 2 cut(s) 670, 1552
MspR9I CCNGG 4 cut(s) 117, 399, 892, 1210
MunI CAATTG 2 cut(s) 1329, 1711
Mva1269I GAATGC 1 cut(s) 834
MvaI CCWGG 1 cut(s) 117
MvnI CGCG 1 cut(s) 1242
MwoI GCNNNNNNNGC 4 cut(s) 235, 308, 449, 491
NciI CCSGG 3 cut(s) 399, 892, 1210
NdeII GATC 9 cut(s) 641, 664, 754, 907, 1091, 1274, 1557, 1645, 1752
NlaIII CATG 6 cut(s) 367, 577, 761, 965, 1220, 1782
NlaIV GGNNCC 3 cut(s) 27, 1158, 1214
NmuCI GTSAC 2 cut(s) 289, 674
NsiI ATGCAT 1 cut(s) 365
NspI RCATGY 1 cut(s) 367
NspV TTCGAA 1 cut(s) 64
OliI CACNNNNGTG 1 cut(s) 692
PagI TCATGA 1 cut(s) 757
PcsI WCGNNNNNNNCGW 1 cut(s) 1673
PctI GAATGC 1 cut(s) 834
PdmI GAANNNNTTC 1 cut(s) 711
PkrI GCNGC 5 cut(s) 184, 228, 310, 313, 1241
PleI GAGTC 1 cut(s) 542
PpsI GAGTC 1 cut(s) 542
PpuMI RGGWCCY 1 cut(s) 328
PsiI TTATAA 1 cut(s) 701
Psp1406I AACGTT 1 cut(s) 875
Psp5II RGGWCCY 1 cut(s) 328
Psp6I CCWGG 1 cut(s) 115
PspGI CCWGG 1 cut(s) 115
PspN4I GGNNCC 3 cut(s) 27, 1158, 1214
PspPI GGNCC 2 cut(s) 328, 1040
PspPPI RGGWCCY 1 cut(s) 328
PstNI CAGNNNCTG 1 cut(s) 831
PvuII CAGCTG 1 cut(s) 1520
RsaI GTAC 2 cut(s) 350, 795
RsaNI GTAC 2 cut(s) 349, 794
RseI CAYNNNNRTG 3 cut(s) 578, 692, 1783
Rsr2I CGGWCCG 1 cut(s) 1040
RsrII CGGWCCG 1 cut(s) 1040
SaqAI TTAA 7 cut(s) 564, 594, 671, 848, 1553, 1703, 1789
SatI GCNGC 5 cut(s) 183, 227, 309, 312, 1240
Sau3AI GATC 9 cut(s) 641, 664, 754, 907, 1091, 1274, 1557, 1645, 1752
Sau96I GGNCC 2 cut(s) 328, 1040
SchI GAGTC 1 cut(s) 543
ScrFI CCNGG 4 cut(s) 117, 399, 892, 1210
SfaNI GCATC 3 cut(s) 1033, 1463, 1586
SfuI TTCGAA 1 cut(s) 64
SinI GGWCC 2 cut(s) 328, 1040
SmiMI CAYNNNNRTG 3 cut(s) 578, 692, 1783
SmlI CTYRAG 5 cut(s) 212, 539, 670, 1552, 1622
SmoI CTYRAG 5 cut(s) 212, 539, 670, 1552, 1622
Sse9I AATT 8 cut(s) 195, 657, 850, 1247, 1290, 1329, 1462, 1711
SsiI CCGC 8 cut(s) 306, 309, 312, 450, 732, 1043, 1066, 1240
SspMI CTAG 4 cut(s) 294, 482, 729, 1071
StyD4I CCNGG 4 cut(s) 115, 397, 890, 1208
StyI CCWWGG 2 cut(s) 911, 991
TaaI ACNGT 6 cut(s) 25, 508, 933, 1260, 1691, 1708
TaiI ACGT 3 cut(s) 582, 602, 878
TaqI TCGA 6 cut(s) 64, 635, 1004, 1059, 1152, 1313
TaqII GACCGA 1 cut(s) 569
TasI AATT 8 cut(s) 195, 657, 850, 1247, 1290, 1329, 1462, 1711
TauI GCSGC 3 cut(s) 311, 314, 1242
Tru1I TTAA 7 cut(s) 564, 594, 671, 848, 1553, 1703, 1789
Tru9I TTAA 7 cut(s) 564, 594, 671, 848, 1553, 1703, 1789
TscAI CASTG 1 cut(s) 513
TseFI GTSAC 2 cut(s) 289, 674
TseI GCWGC 2 cut(s) 182, 226
Tsp45I GTSAC 2 cut(s) 289, 674
TspGWI ACGGA 2 cut(s) 1420, 1559
TspRI CASTG 1 cut(s) 513
Vha464I CTTAAG 2 cut(s) 670, 1552
VpaK11BI GGWCC 2 cut(s) 328, 1040
XapI RAATTY 2 cut(s) 657, 850
XceI RCATGY 1 cut(s) 367
XcmI CCANNNNNNNNNTGG 1 cut(s) 878
XmnI GAANNNNTTC 1 cut(s) 711
XspI CTAG 4 cut(s) 294, 482, 729, 1071
Zsp2I ATGCAT 1 cut(s) 365
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.