Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0006782

Physical Location & Seq

Genomic Coordinates Forward (+)

54374444 .. 54377677

Gene Structure 3234 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003927

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1905 bp

ATGGGTACTAGGCTCCAGAACCAGGAGAGAGTGCCAGAGAATCTGAGAAAACAGCTTGCAATTGCTGTGAGAAGTATCCAGTGGAGCTACGCAATCTTCTGGTCCATTTCACCAAGACAGCCAGGGGTCTTGGAGTGGGGCGATGGGTACTACAATGGAGATATTAAGACAAGAAAAACAGTTCAAGCCATAGAACTTGATGCTGATCAAATGGGTTTGCAGAGGAGTGAACACTTGAGAGAACTTTACGAGTCCCTCTCAGCTGGTGAAGCAAGCCCACAAGCTAGAAGGCCTTCAGCAGCATTATCTCCTGAAGATCTTGCTGATACAGAGTGGTATTACTTGGTTTGCATGTCTTTCGTCTTCAACATTGGCCAAGGGTTGCCAGGACGAACGTTAGCAAATGGCCAACCAATCTGGCTATGCAGTGCTCATTATGCAGATAGTAAAGTGTTTAGTCGCTCTCTACTAGCAAAGACTGTGGTATGCTTTCCTTTTATGGGAGGTGTGATAGAGCTGGGTGTGACTGAGCTGGTTCTGGAGGACCCTGGTCTCATTCAACATGTTAAAACATCATTTTTGGAGGTTCCATACCCTCTATGTTTGAACACAACCAATCCTAGTGCAGGAAGCTATAGAAATGACAATGATCTTACCAGCTCTGCGCTTGATCAGGATGTTATCGACACCAAATTCATTCCAATTGTAAGATGTGAAGAAATAGATGTGACTTACAGTTCAAATGGGTTCGGGCCAAATCAACCAGCTGAAGATTCATTCATGGTTGAAGGGATGAATGGGGCAGCTTCCCAAGTACAGAGCTGGCAGTATATGGATGATGAGTTGAGTAACTACGTACATCATTCCATGGATTCGAGTGATTGCATATCTCAAACATTGGTATATCCTGAAAAGATTGTCTCCGGTCCTAACGGTGAAAAGGTTGTCTCTGATCATTTTGTGCAAGACAATAAAGAGTGCAATTCCACAAAACAAGTCTCTTTGGCACCTGAAAGCAATGACTTGCATTACCAGAGTGTTCTTTCTTCCCTTCTAAAGAGCTCACACCAATTGATTTTGGGGCCACACTTTCAAAATGGTCGTCAGGAATCCACCTTTGTGAGTTGGAAGAAAGGAGGATCTGTAAAATGCCGAAAACAACGAGTTGGAAGCCCGCAATACTTGTTGAAGAAGATTTTGTTTGAAGTTCCTAAGATGCATGTAATTTGTGTTCTTGAGTCCCCAGAAGATAATGGTGATCGAAATGGAGTTTGGAGACCAGAAGCTGGTGAAAGTCTTATGAACCATGTATTATCCGAGAGGAAGCGAAGGGAAAAACTAAATGAAAGGTTTTCCATTTTGAAATCTCTGGTGCCTTCAATTCAAAAGGATGACAAAGTAGCCATACTTGATGAAGCAATAGAGTATTTGAAAGATCTTGAGAAAAGGGTTGAAGAGTTGGAAACGTCCCAGGAGTCAACAGATTTAGAGGCGACAATAAAGAGGAAACCCCAAGATAATAGTGAGAAAACATCTGACAGCTGTTGCAACAACAAAAGGAGTAATGGGAAGAAACCATTAGTTTACAAGAGGAAGGCCTGTGACATTGATGAAACAGAACCAGAAATCAACTATGTTGCGTCTAAGAACAGTTCGAGTGATAATGTAAAGGTGATCATGAACAACAAGGGTGCTCTAATTGAGATGAGGTTTCCTTGGAGGGAGGGAGTGTTGCTAGAAATCATGGATGTAACAAGCAGTCTCCACTTAGATACTCACTCAGTTGAATCATCCACCACAGATGGGATTCTTTCTCTGACTATTCAATCAAGGTTTAAGGGGTCTAATATTGCATCAGCTGGGACGATAGAGCAAGCACTTCAGAGAATCGCTAGGAACTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0001101 GO:0001708 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0008544 GO:0009653 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009913 GO:0009957 GO:0009962 GO:0009963 GO:0009987 GO:0010026 GO:0010033 GO:0010090 GO:0010091 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0023052 GO:0030154 GO:0030855 GO:0031323 GO:0031326 GO:0031537 GO:0031539 GO:0031540 GO:0031542 GO:0032502 GO:0032870 GO:0032989 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045165 GO:0048468 GO:0048518 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0060429 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071840 GO:0080090 GO:0090558 GO:0090626 GO:0140110 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH bHLH-MYC_N

Protein Analysis

635

Amino Acids

71.04

Weight (kDa)

5.44

Isoelectric Point (pI)

55.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bHLH-MYC_N	PF14215	15 - 193	2.2e-48	bHLH-MYC and R2R3-MYB transcription factors N-terminal
HLH	PF00010	434 - 481	1.7e-13	Helix-loop-helix DNA-binding domain
bHLH_SAC51	PF23173	439 - 484	5.5e-08	Transcription factor SAC51 bHLH domain
bHLH-TF_ACT-like_plant	PF22754	555 - 631	1.9e-20	Plant bHLH transcription factor, ACT-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006782)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63650 AT1G63650 AT1G63650 AT5G41315 AT5G41315 AT5G41315
fragaria_vesca	FvH4_5g02520
malus_domestica	MD06G1084400.v1.1 MD14G1105500.v1.1
prunus_persica	Prupe.5G100700_v2.0.a1 Prupe.5G100700_v2.0.a1 Prupe.5G100700_v2.0.a1
pyrus_communis	pycom06g08070 pycom14g10100
rosa_chinensis	RchiOBHm_Chr7g0197531
rosa_laevigata	RLG00000003927
rosa_multiflora	Rmu_sc0007007.1_g000003
rosa_roxburghii	Rroxscaffold_3G00258370
rosa_rugosa	Rorug07G0040800
rosa_samantha	Rh1AG185600 Rh1CG171400 Rh7AG165700 Rh7BG167700 Rh7CG174100 Rh7DG167100
rosa_wichuraiana	Rw7G014420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	1006, 1372
AccB7I	CCANNNNNTGG	1 cut(s)	1286
AciI	CCGC	1 cut(s)	1175
AclI	AACGTT	1 cut(s)	395
AclWI	GGATC	1 cut(s)	1147
AcoI	YGGCCR	2 cut(s)	373, 406
AcsI	RAATTY	1 cut(s)	692
AcuI	CTGAAG	4 cut(s)	279, 333, 789, 1865
AfaI	GTAC	4 cut(s)	7, 149, 816, 858
AfiI	CCNNNNNNNGG	5 cut(s)	22, 500, 626, 1286, 1803
AflIII	ACRYGT	1 cut(s)	562
AjnI	CCWGG	5 cut(s)	21, 121, 385, 547, 1470
AjuI	GAANNNNNNNTTGG	2 cut(s)	1255, 1287
AleI	CACNNNNGTG	1 cut(s)	1118
Alw21I	GWGCWC	3 cut(s)	433, 1064, 1696
Alw26I	GTCTC	6 cut(s)	557, 925, 952, 1003, 1270, 1766
AlwI	GGATC	1 cut(s)	1147
AlwNI	CAGNNNCTG	1 cut(s)	1286
AoxI	GGCC	6 cut(s)	290, 373, 406, 752, 1082, 1596
ApeKI	GCWGC	2 cut(s)	299, 803
ApoI	RAATTY	1 cut(s)	692
ArsI	GACNNNNNNTTYG	2 cut(s)	1087, 1119
Asp700I	GAANNNNTTC	1 cut(s)	292
AspLEI	GCGC	1 cut(s)	667
AspS9I	GGNCC	5 cut(s)	102, 544, 752, 926, 1082
AsuHPI	GGTGA	6 cut(s)	102, 278, 947, 1268, 1301, 1684
AvaII	GGWCC	3 cut(s)	102, 544, 926
BalI	TGGCCA	2 cut(s)	375, 408
BanI	GGYRCC	2 cut(s)	1006, 1372
BanII	GRGCYC	1 cut(s)	1064
BbsI	GAAGAC	1 cut(s)	355
Bbv12I	GWGCWC	3 cut(s)	433, 1064, 1696
BbvI	GCAGC	2 cut(s)	311, 815
BccI	CCATC	2 cut(s)	137, 1796
BcgI	CGANNNNNNTGC	2 cut(s)	340, 374
BciT130I	CCWGG	5 cut(s)	23, 123, 387, 549, 1472
BciVI	GTATCC	1 cut(s)	86
BclI	TGATCA	4 cut(s)	205, 670, 952, 1674
BcoDI	GTCTC	6 cut(s)	557, 925, 952, 1003, 1270, 1766
BfaI	CTAG	6 cut(s)	9, 285, 470, 621, 1736, 1893
BfmI	CTRYAG	1 cut(s)	634
BfuI	GTATCC	1 cut(s)	86
BglII	AGATCT	2 cut(s)	316, 1435
BisI	GCNGC	2 cut(s)	300, 804
BlsI	GCNGC	2 cut(s)	301, 805
Bme1390I	CCNGG	5 cut(s)	23, 123, 387, 549, 1472
Bme18I	GGWCC	3 cut(s)	102, 544, 926
BmgT120I	GGNCC	5 cut(s)	102, 544, 752, 926, 1082
BmiI	GGNNCC	6 cut(s)	14, 546, 588, 1008, 1083, 1374
BmrFI	CCNGG	5 cut(s)	23, 123, 387, 549, 1472
BmsI	GCATC	3 cut(s)	190, 1206, 1862
BoxI	GACNNNNGTC	1 cut(s)	549
BpiI	GAAGAC	1 cut(s)	355
BplI	GAGNNNNNCTC	2 cut(s)	242, 274
BpmI	CTGGAG	1 cut(s)	560
BpuEI	CTTGAG	3 cut(s)	256, 1256, 1460
BsaAI	YACGTR	1 cut(s)	856
BsaBI	GATNNNNATC	1 cut(s)	204
BsaI	GGTCTC	2 cut(s)	557, 1270
BsaJI	CCNNGG	6 cut(s)	122, 376, 547, 867, 1470, 1715
BsaWI	WCCGGW	1 cut(s)	923
BsaXI	ACNNNNNCTCC	4 cut(s)	1128, 1158, 1715, 1745
Bsc4I	CCNNNNNNNGG	5 cut(s)	22, 500, 626, 1286, 1803
Bse1I	ACTGG	1 cut(s)	79
Bse3DI	GCAATG	1 cut(s)	1024
Bse8I	GATNNNNATC	1 cut(s)	204
BseBI	CCWGG	5 cut(s)	23, 123, 387, 549, 1472
BseDI	CCNNGG	6 cut(s)	122, 376, 547, 867, 1470, 1715
BseGI	GGATG	6 cut(s)	682, 798, 841, 1396, 1753, 1790
BseJI	GATNNNNATC	1 cut(s)	204
BseLI	CCNNNNNNNGG	5 cut(s)	22, 500, 626, 1286, 1803
BseMI	GCAATG	1 cut(s)	1024
BseMII	CTCAG	4 cut(s)	35, 273, 519, 1794
BseNI	ACTGG	1 cut(s)	79
BseRI	GAGGAG	1 cut(s)	238
BseXI	GCAGC	2 cut(s)	311, 815
BseYI	CCCAGC	2 cut(s)	517, 1859
BsgI	GTGCAG	1 cut(s)	645
BshFI	GGCC	6 cut(s)	292, 375, 408, 754, 1084, 1598
BshNI	GGYRCC	2 cut(s)	1006, 1372
BsiHKAI	GWGCWC	3 cut(s)	433, 1064, 1696
BsiSI	CCGG	1 cut(s)	924
BslFI	GGGAC	4 cut(s)	238, 1225, 1453, 1876
BslI	CCNNNNNNNGG	5 cut(s)	22, 500, 626, 1286, 1803
BsmAI	GTCTC	6 cut(s)	557, 925, 952, 1003, 1270, 1766
BsmFI	GGGAC	4 cut(s)	238, 1225, 1453, 1876
BsnI	GGCC	6 cut(s)	292, 375, 408, 754, 1084, 1598
Bso31I	GGTCTC	2 cut(s)	557, 1270
Bsp1286I	GDGCHC	3 cut(s)	433, 1064, 1696
Bsp143I	GATC	9 cut(s)	205, 316, 649, 670, 952, 1139, 1258, 1435, 1674
Bsp19I	CCATGG	1 cut(s)	867
BspACI	CCGC	1 cut(s)	1175
BspANI	GGCC	6 cut(s)	292, 375, 408, 754, 1084, 1598
BspCNI	CTCAG	4 cut(s)	36, 272, 520, 1793
BspHI	TCATGA	1 cut(s)	1677
BspLI	GGNNCC	6 cut(s)	14, 546, 588, 1008, 1083, 1374
BspPI	GGATC	1 cut(s)	1147
BspT107I	GGYRCC	2 cut(s)	1006, 1372
BspTNI	GGTCTC	2 cut(s)	557, 1270
BsrDI	GCAATG	1 cut(s)	1024
BsrI	ACTGG	1 cut(s)	79
BssECI	CCNNGG	6 cut(s)	122, 376, 547, 867, 1470, 1715
BssMI	GATC	9 cut(s)	205, 316, 649, 670, 952, 1139, 1258, 1435, 1674
BssT1I	CCWWGG	3 cut(s)	376, 867, 1715
Bst2UI	CCWGG	5 cut(s)	23, 123, 387, 549, 1472
Bst4CI	ACNGT	6 cut(s)	181, 481, 737, 935, 1652, 1901
Bst6I	CTCTTC	1 cut(s)	1449
BstBAI	YACGTR	1 cut(s)	856
BstC8I	GCNNGC	5 cut(s)	57, 274, 824, 1175, 1875
BstDEI	CTNAG	7 cut(s)	44, 259, 528, 1212, 1644, 1768, 1780
BstDSI	CCRYGG	1 cut(s)	867
BstENI	CCTNNNNNAGG	1 cut(s)	624
BstF5I	GGATG	6 cut(s)	682, 798, 841, 1396, 1753, 1790
BstHHI	GCGC	1 cut(s)	667
BstKTI	GATC	9 cut(s)	208, 319, 652, 673, 955, 1142, 1261, 1438, 1677
BstMAI	GTCTC	6 cut(s)	557, 925, 952, 1003, 1270, 1766
BstMBI	GATC	9 cut(s)	205, 316, 649, 670, 952, 1139, 1258, 1435, 1674
BstMWI	GCNNNNNNNGC	2 cut(s)	269, 437
BstNI	CCWGG	5 cut(s)	23, 123, 387, 549, 1472
BstNSI	RCATGY	3 cut(s)	355, 566, 1223
BstPAI	GACNNNNGTC	1 cut(s)	549
BstSCI	CCNGG	5 cut(s)	21, 121, 385, 547, 1470
BstSFI	CTRYAG	1 cut(s)	634
BstSNI	TACGTA	1 cut(s)	856
BstV1I	GCAGC	2 cut(s)	311, 815
BstV2I	GAAGAC	1 cut(s)	355
BstX2I	RGATCY	3 cut(s)	316, 1139, 1435
BstYI	RGATCY	3 cut(s)	316, 1139, 1435
BsuI	GTATCC	1 cut(s)	86
BsuRI	GGCC	6 cut(s)	292, 375, 408, 754, 1084, 1598
BtgI	CCRYGG	1 cut(s)	867
BtgZI	GCGATG	1 cut(s)	156
BtsCI	GGATG	6 cut(s)	682, 798, 841, 1396, 1753, 1790
BtsI	GCAGTG	1 cut(s)	433
BtsIMutI	CAGTG	2 cut(s)	86, 433
Cac8I	GCNNGC	5 cut(s)	57, 274, 824, 1175, 1875
CaiI	CAGNNNCTG	1 cut(s)	1286
CciI	TCATGA	1 cut(s)	1677
CfoI	GCGC	1 cut(s)	667
Cfr13I	GGNCC	5 cut(s)	102, 544, 752, 926, 1082
CseI	GACGC	1 cut(s)	1629
Csp6I	GTAC	4 cut(s)	6, 148, 815, 857
CspCI	CAANNNNNGTGG	2 cut(s)	462, 497
CviAII	CATG	8 cut(s)	352, 563, 781, 868, 1220, 1307, 1678, 1744
CviQI	GTAC	4 cut(s)	6, 148, 815, 857
DdeI	CTNAG	7 cut(s)	44, 259, 528, 1212, 1644, 1768, 1780
DpnI	GATC	9 cut(s)	207, 318, 651, 672, 954, 1141, 1260, 1437, 1676
DpnII	GATC	9 cut(s)	205, 316, 649, 670, 952, 1139, 1258, 1435, 1674
EaeI	YGGCCR	2 cut(s)	373, 406
Eam1104I	CTCTTC	1 cut(s)	1449
EarI	CTCTTC	1 cut(s)	1449
Ecl136II	GAGCTC	1 cut(s)	1062
Eco105I	TACGTA	1 cut(s)	856
Eco130I	CCWWGG	3 cut(s)	376, 867, 1715
Eco147I	AGGCCT	2 cut(s)	292, 1598
Eco24I	GRGCYC	1 cut(s)	1064
Eco31I	GGTCTC	2 cut(s)	557, 1270
Eco47I	GGWCC	3 cut(s)	102, 544, 926
Eco53kI	GAGCTC	1 cut(s)	1062
Eco57I	CTGAAG	4 cut(s)	279, 333, 789, 1865
EcoICRI	GAGCTC	1 cut(s)	1062
EcoNI	CCTNNNNNAGG	1 cut(s)	624
EcoO109I	RGGNCCY	1 cut(s)	544
EcoRII	CCWGG	5 cut(s)	21, 121, 385, 547, 1470
EcoT14I	CCWWGG	3 cut(s)	376, 867, 1715
EcoT22I	ATGCAT	1 cut(s)	1221
EcoT38I	GRGCYC	1 cut(s)	1064
ErhI	CCWWGG	3 cut(s)	376, 867, 1715
FaeI	CATG	8 cut(s)	355, 566, 784, 871, 1223, 1310, 1681, 1747
FaqI	GGGAC	4 cut(s)	238, 1225, 1453, 1876
FatI	CATG	8 cut(s)	351, 562, 780, 867, 1219, 1306, 1677, 1743
FauI	CCCGC	1 cut(s)	1182
FbaI	TGATCA	4 cut(s)	205, 670, 952, 1674
Fnu4HI	GCNGC	2 cut(s)	300, 804
FokI	GGATG	6 cut(s)	689, 805, 848, 1403, 1760, 1777
FriOI	GRGCYC	1 cut(s)	1064
Fsp4HI	GCNGC	2 cut(s)	300, 804
FspBI	CTAG	6 cut(s)	9, 285, 470, 621, 1736, 1893
GlaI	GCGC	1 cut(s)	666
GluI	GCNGC	2 cut(s)	300, 804
GsaI	CCCAGC	2 cut(s)	521, 1863
GsuI	CTGGAG	1 cut(s)	560
HaeIII	GGCC	6 cut(s)	292, 375, 408, 754, 1084, 1598
HapII	CCGG	1 cut(s)	924
HgaI	GACGC	1 cut(s)	1629
HhaI	GCGC	1 cut(s)	667
Hin1II	CATG	8 cut(s)	355, 566, 784, 871, 1223, 1310, 1681, 1747
Hin6I	GCGC	1 cut(s)	665
HinP1I	GCGC	1 cut(s)	665
HincII	GTYRAC	1 cut(s)	1479
HindII	GTYRAC	1 cut(s)	1479
HpaII	CCGG	1 cut(s)	924
HphI	GGTGA	6 cut(s)	102, 278, 947, 1268, 1301, 1684
Hpy166II	GTNNAC	3 cut(s)	230, 1479, 1585
Hpy188I	TCNGA	6 cut(s)	45, 952, 1318, 1537, 1818, 1884
Hpy188III	TCNNGA	9 cut(s)	16, 311, 539, 674, 908, 1106, 1235, 1439, 1678
Hpy8I	GTNNAC	3 cut(s)	230, 1479, 1585
HpyAV	CCTTC	7 cut(s)	282, 303, 782, 1061, 1323, 1386, 1588
HpyCH4III	ACNGT	6 cut(s)	181, 481, 737, 935, 1652, 1901
HpyCH4IV	ACGT	3 cut(s)	395, 855, 1466
HpyF10VI	GCNNNNNNNGC	2 cut(s)	269, 437
HpyF3I	CTNAG	7 cut(s)	44, 259, 528, 1212, 1644, 1768, 1780
HpySE526I	ACGT	3 cut(s)	395, 855, 1466
Hsp92II	CATG	8 cut(s)	355, 566, 784, 871, 1223, 1310, 1681, 1747
HspAI	GCGC	1 cut(s)	665
Ksp22I	TGATCA	4 cut(s)	205, 670, 952, 1674
Kzo9I	GATC	9 cut(s)	205, 316, 649, 670, 952, 1139, 1258, 1435, 1674
LmnI	GCTCC	2 cut(s)	18, 84
Lsp1109I	GCAGC	2 cut(s)	311, 815
LweI	GCATC	3 cut(s)	190, 1206, 1862
MaeI	CTAG	6 cut(s)	9, 285, 470, 621, 1736, 1893
MaeII	ACGT	3 cut(s)	395, 855, 1466
MaeIII	GTNAC	5 cut(s)	523, 727, 848, 1601, 1750
MalI	GATC	9 cut(s)	207, 318, 651, 672, 954, 1141, 1260, 1437, 1676
MboI	GATC	9 cut(s)	205, 316, 649, 670, 952, 1139, 1258, 1435, 1674
MfeI	CAATTG	3 cut(s)	60, 702, 1070
MflI	RGATCY	3 cut(s)	316, 1139, 1435
MhlI	GDGCHC	3 cut(s)	433, 1064, 1696
MlsI	TGGCCA	2 cut(s)	375, 408
MluCI	AATT	8 cut(s)	60, 692, 702, 982, 1070, 1224, 1380, 1698
MluNI	TGGCCA	2 cut(s)	375, 408
MlyI	GAGTC	3 cut(s)	260, 1247, 1484
MmeI	TCCRAC	3 cut(s)	1106, 1147, 1440
Mox20I	TGGCCA	2 cut(s)	375, 408
Mph1103I	ATGCAT	1 cut(s)	1221
MroXI	GAANNNNTTC	1 cut(s)	292
MscI	TGGCCA	2 cut(s)	375, 408
MseI	TTAA	3 cut(s)	165, 567, 1836
MslI	CAYNNNNRTG	1 cut(s)	1118
Msp20I	TGGCCA	2 cut(s)	375, 408
MspA1I	CMGCKG	4 cut(s)	263, 767, 1542, 1859
MspI	CCGG	1 cut(s)	924
MspR9I	CCNGG	5 cut(s)	23, 123, 387, 549, 1472
MunI	CAATTG	3 cut(s)	60, 702, 1070
MvaI	CCWGG	5 cut(s)	23, 123, 387, 549, 1472
MwoI	GCNNNNNNNGC	2 cut(s)	269, 437
NcoI	CCATGG	1 cut(s)	867
NdeII	GATC	9 cut(s)	205, 316, 649, 670, 952, 1139, 1258, 1435, 1674
NlaIII	CATG	8 cut(s)	355, 566, 784, 871, 1223, 1310, 1681, 1747
NlaIV	GGNNCC	6 cut(s)	14, 546, 588, 1008, 1083, 1374
NmuCI	GTSAC	3 cut(s)	523, 727, 1601
NsiI	ATGCAT	1 cut(s)	1221
NspI	RCATGY	3 cut(s)	355, 566, 1223
OliI	CACNNNNGTG	1 cut(s)	1118
PagI	TCATGA	1 cut(s)	1677
PceI	AGGCCT	2 cut(s)	292, 1598
PciI	ACATGT	1 cut(s)	562
PdmI	GAANNNNTTC	1 cut(s)	292
PfeI	GAWTC	7 cut(s)	40, 773, 872, 1109, 1787, 1807, 1887
PflMI	CCANNNNNTGG	1 cut(s)	1286
PkrI	GCNGC	2 cut(s)	301, 805
PleI	GAGTC	3 cut(s)	259, 1246, 1483
PpsI	GAGTC	3 cut(s)	259, 1246, 1483
Ppu21I	YACGTR	1 cut(s)	856
PpuMI	RGGWCCY	1 cut(s)	544
PscI	ACATGT	1 cut(s)	562
PshAI	GACNNNNGTC	1 cut(s)	549
Psp124BI	GAGCTC	1 cut(s)	1064
Psp1406I	AACGTT	1 cut(s)	395
Psp5II	RGGWCCY	1 cut(s)	544
Psp6I	CCWGG	5 cut(s)	21, 121, 385, 547, 1470
PspFI	CCCAGC	2 cut(s)	517, 1859
PspGI	CCWGG	5 cut(s)	21, 121, 385, 547, 1470
PspN4I	GGNNCC	6 cut(s)	14, 546, 588, 1008, 1083, 1374
PspPI	GGNCC	5 cut(s)	102, 544, 752, 926, 1082
PspPPI	RGGWCCY	1 cut(s)	544
PsrI	GAACNNNNNNTAC	2 cut(s)	1215, 1247
PstNI	CAGNNNCTG	1 cut(s)	1286
PsuI	RGATCY	3 cut(s)	316, 1139, 1435
PvuII	CAGCTG	4 cut(s)	263, 767, 1542, 1859
RsaI	GTAC	4 cut(s)	7, 149, 816, 858
RsaNI	GTAC	4 cut(s)	6, 148, 815, 857
RseI	CAYNNNNRTG	1 cut(s)	1118
SacI	GAGCTC	1 cut(s)	1064
SaqAI	TTAA	3 cut(s)	165, 567, 1836
SatI	GCNGC	2 cut(s)	300, 804
Sau3AI	GATC	9 cut(s)	205, 316, 649, 670, 952, 1139, 1258, 1435, 1674
Sau96I	GGNCC	5 cut(s)	102, 544, 752, 926, 1082
SchI	GAGTC	3 cut(s)	260, 1247, 1484
ScrFI	CCNGG	5 cut(s)	23, 123, 387, 549, 1472
SduI	GDGCHC	3 cut(s)	433, 1064, 1696
SfaNI	GCATC	3 cut(s)	190, 1206, 1862
SfcI	CTRYAG	1 cut(s)	634
SinI	GGWCC	3 cut(s)	102, 544, 926
SmiMI	CAYNNNNRTG	1 cut(s)	1118
SmlI	CTYRAG	3 cut(s)	235, 1235, 1439
SmoI	CTYRAG	3 cut(s)	235, 1235, 1439
SnaBI	TACGTA	1 cut(s)	856
Sse9I	AATT	8 cut(s)	60, 692, 702, 982, 1070, 1224, 1380, 1698
SseBI	AGGCCT	2 cut(s)	292, 1598
SsiI	CCGC	1 cut(s)	1175
SspI	AATATT	1 cut(s)	1849
SspMI	CTAG	6 cut(s)	9, 285, 470, 621, 1736, 1893
SstI	GAGCTC	1 cut(s)	1064
StuI	AGGCCT	2 cut(s)	292, 1598
StyD4I	CCNGG	5 cut(s)	21, 121, 385, 547, 1470
StyI	CCWWGG	3 cut(s)	376, 867, 1715
TaaI	ACNGT	6 cut(s)	181, 481, 737, 935, 1652, 1901
TaiI	ACGT	3 cut(s)	398, 858, 1469
TaqI	TCGA	4 cut(s)	684, 875, 1261, 1655
TasI	AATT	8 cut(s)	60, 692, 702, 982, 1070, 1224, 1380, 1698
TatI	WGTACW	1 cut(s)	814
TfiI	GAWTC	7 cut(s)	40, 773, 872, 1109, 1787, 1807, 1887
Tru1I	TTAA	3 cut(s)	165, 567, 1836
Tru9I	TTAA	3 cut(s)	165, 567, 1836
TscAI	CASTG	2 cut(s)	86, 433
TseFI	GTSAC	3 cut(s)	523, 727, 1601
TseI	GCWGC	2 cut(s)	299, 803
Tsp45I	GTSAC	3 cut(s)	523, 727, 1601
TspDTI	ATGAA	9 cut(s)	685, 765, 769, 809, 1316, 1359, 1428, 1626, 1694
TspRI	CASTG	2 cut(s)	86, 433
Van91I	CCANNNNNTGG	1 cut(s)	1286
VpaK11BI	GGWCC	3 cut(s)	102, 544, 926
XagI	CCTNNNNNAGG	1 cut(s)	624
XapI	RAATTY	1 cut(s)	692
XceI	RCATGY	3 cut(s)	355, 566, 1223
XmnI	GAANNNNTTC	1 cut(s)	292
XspI	CTAG	6 cut(s)	9, 285, 470, 621, 1736, 1893
Zsp2I	ATGCAT	1 cut(s)	1221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.