Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0006782

Physical Location & Seq

Genomic Coordinates Reverse (-)

13077914 .. 13081132

Gene Structure 3219 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG167700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1920 bp

ATGGGTACTAGGCTCCAGAACCAGGAGAGAGTGCCAGAGAATCTGAGAAAACAGCTTGCAATTGCTGTGAGAAGTATCCAGTGGAGCTACGCAATCTTCTGGTCCATTTCACCAAGACAGCCAGGGGTCTTGGAGTGGGGTGATGGGTACTACAATGGAGATATTAAGACAAGAAAAACAGTTCAAGCCATAGAACTTGATGCTGATCAAATGGGTTTGCAGAGGAGTGAACACTTGAGAGAACTTTACGAGTCCCTCTCAGCTGGTGAAGCAAGCCCACAAGCTAGAAGGCCTTCAGCAGCATTATCTCCTGAAGATCTTGCTGATACAGAGTGGTATTACTTGGTTTGCATGTCTTTCGTCTTCAACATTGGCCAAGGGTTGCCAGGACGAACGTTAGCGAATGGCCAACCAATCTGGCTATGCAATGCTCATTATGCAGATAGTAAAGTGTTTAGTCGCTCTCTACTAGCAAAGAGCGCGTCCATTCAGACTGTGGTATGCTTTCCTTTTATCGGAGGTGTGATAGAGCTGGGTGTGACTGAGCTGGTTCTGGAGGACCCTGGTCTCATTCAACATGTTAAAACATCATTTTTGGAGGTTCCATACCCCCTATGTTTGAACACAACCAATCCTAGTGCAGGAAGCTATAGAAATGACAATGATCTTACCAGCTCTGCGCTTGATCAGGATGTTATCGACACCAAATTCATTCCAATTGTAAGATGTGAAGAAATAGATGTGACTTACAGTTCAAATGGGTTCGGGCCAAATCAACCAGCTGAAGATTCATTCATGGTTGAAGGGATGAATGGGGCAGCTTCCCAAGTACAGAGCTGGCAGTATATGGATGATGAGTTAAGTAACTACGTACATCATTCCATGGATTCGAGTGATTGCATATCTCAAACATTGGTATATCCTGAAAAGATTGTCTCCGGTCCTAACGGTGAAAAGGTTGTCTCTGATCATTTTCTGCAAGACCATAAAGAGTGCAATTCCACAAAACAAGTCTCTTTGGCACCTGAAAGCAATGACTTGCATTACCAGAGTGTTCTTTCTTCCCTTCTAAAGAGCTCACACCAATTGATTTTGGGACCACACTTTCAAAATGGTCGTCAGGAATCCAGCTTTGTGAGTTGGAAGAAAGGAGGATCTGTAAAATGCCGAAAACAACGAGTTGGAAGCCCTCAATACTTGTTGAAGAAGATTTTGTTTGAAGTTCCTAAGATGCATGTAATTTGTGTTCTTGAGTCCCCAGAAGATAATGGTGATCGAAATGGAGTTTGGAGACCAGAAGCTGGTGAAAGTCTTATGAACCATGTATTATCCGAGAGGAAGCGAAGGGAAAAACTAAATGAAAGGTTTTCCATTTTGAAATCTCTGGTGCCTTCAATTCAAAAGGATGACAAAGTAGCCATACTTGATGAAGCAATAGAGTATTTGAAAGATCTTGAGAAAAGGGTTGAAGAGTTGGAAACGTCCCAGGAGTCAACAGATTTAGAGGCGACAATAAAGAGGAAACCACAAGATAATAGTGAGAAAACATCTGACAGCTGTTGCAACAACAAAAGGAGTAATGGGAAGAAATCATTAGTTTACAAGAGGAAGGCCTGTGACATTGATGAAACAGAACCAGAAATCAACTATGTTGCGTCGAAGAACAGTTCGAGTGATAATGTAAAGGTGAGTATGAACAACAAGGGTGCTCTAATTGAGATGAGGTTTCCTTGGAGGGAGGGAGTGTTGCTAGAAATCATGGATGTCACAAGCAGTCTCCACTTAGATACTCACTCGGTTGAATCATCCACCACAGATGGGATTCTTTCTCTGACTATTCAATCAAGGTTTAAGGGGTCTAATATTGCATCAGCTGGGACGATAGAGCAAGCACTTCAGAGAATCGCTAGGAACTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0001101 GO:0001708 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0008544 GO:0009653 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009913 GO:0009957 GO:0009962 GO:0009963 GO:0009987 GO:0010026 GO:0010033 GO:0010090 GO:0010091 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0023052 GO:0030154 GO:0030855 GO:0031323 GO:0031326 GO:0031537 GO:0031539 GO:0031540 GO:0031542 GO:0032502 GO:0032870 GO:0032989 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045165 GO:0048468 GO:0048518 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0060429 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071840 GO:0080090 GO:0090558 GO:0090626 GO:0140110 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH bHLH-MYC_N

Protein Analysis

639

Amino Acids

71.52

Weight (kDa)

5.49

Isoelectric Point (pI)

56.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bHLH-MYC_N	PF14215	15 - 198	7.5e-54	bHLH-MYC and R2R3-MYB transcription factors N-terminal
HLH	PF00010	439 - 486	1.7e-13	Helix-loop-helix DNA-binding domain
bHLH_SAC51	PF23173	444 - 489	5.6e-08	Transcription factor SAC51 bHLH domain
bHLH-TF_ACT-like_plant	PF22754	560 - 636	8.4e-22	Plant bHLH transcription factor, ACT-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006782)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63650 AT1G63650 AT1G63650 AT5G41315 AT5G41315 AT5G41315
fragaria_vesca	FvH4_5g02520
malus_domestica	MD06G1084400.v1.1 MD14G1105500.v1.1
prunus_persica	Prupe.5G100700_v2.0.a1 Prupe.5G100700_v2.0.a1 Prupe.5G100700_v2.0.a1
pyrus_communis	pycom06g08070 pycom14g10100
rosa_chinensis	RchiOBHm_Chr7g0197531
rosa_laevigata	RLG00000003927
rosa_multiflora	Rmu_sc0007007.1_g000003
rosa_roxburghii	Rroxscaffold_3G00258370
rosa_rugosa	Rorug07G0040800
rosa_samantha	Rh1AG185600 Rh1CG171400 Rh7AG165700 Rh7BG167700 Rh7CG174100 Rh7DG167100
rosa_wichuraiana	Rw7G014420

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	1021, 1387
AccB7I	CCANNNNNTGG	1 cut(s)	1301
AccII	CGCG	1 cut(s)	482
AclI	AACGTT	1 cut(s)	395
AclWI	GGATC	1 cut(s)	1162
AcoI	YGGCCR	2 cut(s)	373, 406
AcsI	RAATTY	1 cut(s)	707
AcuI	CTGAAG	4 cut(s)	279, 333, 804, 1880
AfaI	GTAC	4 cut(s)	7, 149, 831, 873
AfiI	CCNNNNNNNGG	5 cut(s)	22, 515, 641, 1301, 1818
AflIII	ACRYGT	1 cut(s)	577
AjnI	CCWGG	5 cut(s)	21, 121, 385, 562, 1485
AjuI	GAANNNNNNNTTGG	2 cut(s)	1270, 1302
Alw21I	GWGCWC	2 cut(s)	1079, 1711
Alw26I	GTCTC	6 cut(s)	572, 940, 967, 1018, 1285, 1781
AlwI	GGATC	1 cut(s)	1162
AlwNI	CAGNNNCTG	1 cut(s)	1301
AoxI	GGCC	5 cut(s)	290, 373, 406, 767, 1611
ApeKI	GCWGC	2 cut(s)	299, 818
ApoI	RAATTY	1 cut(s)	707
ArsI	GACNNNNNNTTYG	4 cut(s)	467, 499, 1102, 1134
Asp700I	GAANNNNTTC	1 cut(s)	292
AspLEI	GCGC	2 cut(s)	482, 682
AspS9I	GGNCC	5 cut(s)	102, 559, 767, 941, 1097
AsuHPI	GGTGA	7 cut(s)	102, 152, 278, 962, 1283, 1316, 1699
AvaII	GGWCC	4 cut(s)	102, 559, 941, 1097
BalI	TGGCCA	2 cut(s)	375, 408
BanI	GGYRCC	2 cut(s)	1021, 1387
BanII	GRGCYC	1 cut(s)	1079
BbsI	GAAGAC	1 cut(s)	355
Bbv12I	GWGCWC	2 cut(s)	1079, 1711
BbvI	GCAGC	2 cut(s)	311, 830
BccI	CCATC	2 cut(s)	137, 1811
BcgI	CGANNNNNNTGC	2 cut(s)	340, 374
BciT130I	CCWGG	5 cut(s)	23, 123, 387, 564, 1487
BciVI	GTATCC	1 cut(s)	86
BclI	TGATCA	3 cut(s)	205, 685, 967
BcoDI	GTCTC	6 cut(s)	572, 940, 967, 1018, 1285, 1781
BfaI	CTAG	6 cut(s)	9, 285, 470, 636, 1751, 1908
BfmI	CTRYAG	1 cut(s)	649
BfuI	GTATCC	1 cut(s)	86
BglII	AGATCT	2 cut(s)	316, 1450
BisI	GCNGC	2 cut(s)	300, 819
BlsI	GCNGC	2 cut(s)	301, 820
Bme1390I	CCNGG	5 cut(s)	23, 123, 387, 564, 1487
Bme18I	GGWCC	4 cut(s)	102, 559, 941, 1097
BmgT120I	GGNCC	5 cut(s)	102, 559, 767, 941, 1097
BmiI	GGNNCC	6 cut(s)	14, 561, 603, 1023, 1098, 1389
BmrFI	CCNGG	5 cut(s)	23, 123, 387, 564, 1487
BmsI	GCATC	3 cut(s)	190, 1221, 1877
BoxI	GACNNNNGTC	1 cut(s)	564
BpiI	GAAGAC	1 cut(s)	355
BplI	GAGNNNNNCTC	2 cut(s)	242, 274
BpmI	CTGGAG	1 cut(s)	575
BpuEI	CTTGAG	3 cut(s)	256, 1271, 1475
BsaAI	YACGTR	1 cut(s)	871
BsaBI	GATNNNNATC	1 cut(s)	204
BsaI	GGTCTC	2 cut(s)	572, 1285
BsaJI	CCNNGG	6 cut(s)	122, 376, 562, 882, 1485, 1730
BsaWI	WCCGGW	1 cut(s)	938
BsaXI	ACNNNNNCTCC	4 cut(s)	1143, 1173, 1730, 1760
Bsc4I	CCNNNNNNNGG	5 cut(s)	22, 515, 641, 1301, 1818
Bse1I	ACTGG	1 cut(s)	79
Bse3DI	GCAATG	2 cut(s)	433, 1039
Bse8I	GATNNNNATC	1 cut(s)	204
BseBI	CCWGG	5 cut(s)	23, 123, 387, 564, 1487
BseDI	CCNNGG	6 cut(s)	122, 376, 562, 882, 1485, 1730
BseGI	GGATG	6 cut(s)	697, 813, 856, 1411, 1768, 1805
BseJI	GATNNNNATC	1 cut(s)	204
BseLI	CCNNNNNNNGG	5 cut(s)	22, 515, 641, 1301, 1818
BseMI	GCAATG	2 cut(s)	433, 1039
BseMII	CTCAG	3 cut(s)	35, 273, 534
BseNI	ACTGG	1 cut(s)	79
BseRI	GAGGAG	1 cut(s)	238
BseXI	GCAGC	2 cut(s)	311, 830
BseYI	CCCAGC	2 cut(s)	532, 1874
BsgI	GTGCAG	1 cut(s)	660
Bsh1236I	CGCG	1 cut(s)	482
BshFI	GGCC	5 cut(s)	292, 375, 408, 769, 1613
BshNI	GGYRCC	2 cut(s)	1021, 1387
BsiHKAI	GWGCWC	2 cut(s)	1079, 1711
BsiSI	CCGG	1 cut(s)	939
BslFI	GGGAC	5 cut(s)	238, 1110, 1240, 1468, 1891
BslI	CCNNNNNNNGG	5 cut(s)	22, 515, 641, 1301, 1818
BsmAI	GTCTC	6 cut(s)	572, 940, 967, 1018, 1285, 1781
BsmFI	GGGAC	5 cut(s)	238, 1110, 1240, 1468, 1891
BsnI	GGCC	5 cut(s)	292, 375, 408, 769, 1613
Bso31I	GGTCTC	2 cut(s)	572, 1285
Bsp1286I	GDGCHC	2 cut(s)	1079, 1711
Bsp143I	GATC	8 cut(s)	205, 316, 664, 685, 967, 1154, 1273, 1450
Bsp19I	CCATGG	1 cut(s)	882
BspANI	GGCC	5 cut(s)	292, 375, 408, 769, 1613
BspCNI	CTCAG	3 cut(s)	36, 272, 535
BspFNI	CGCG	1 cut(s)	482
BspLI	GGNNCC	6 cut(s)	14, 561, 603, 1023, 1098, 1389
BspPI	GGATC	1 cut(s)	1162
BspT107I	GGYRCC	2 cut(s)	1021, 1387
BspTNI	GGTCTC	2 cut(s)	572, 1285
BsrDI	GCAATG	2 cut(s)	433, 1039
BsrI	ACTGG	1 cut(s)	79
BssECI	CCNNGG	6 cut(s)	122, 376, 562, 882, 1485, 1730
BssMI	GATC	8 cut(s)	205, 316, 664, 685, 967, 1154, 1273, 1450
BssT1I	CCWWGG	3 cut(s)	376, 882, 1730
Bst2UI	CCWGG	5 cut(s)	23, 123, 387, 564, 1487
Bst4CI	ACNGT	6 cut(s)	181, 496, 752, 950, 1667, 1916
Bst6I	CTCTTC	1 cut(s)	1464
BstBAI	YACGTR	1 cut(s)	871
BstC8I	GCNNGC	4 cut(s)	57, 274, 839, 1890
BstDEI	CTNAG	5 cut(s)	44, 259, 543, 1227, 1783
BstDSI	CCRYGG	1 cut(s)	882
BstENI	CCTNNNNNAGG	1 cut(s)	639
BstF5I	GGATG	6 cut(s)	697, 813, 856, 1411, 1768, 1805
BstFNI	CGCG	1 cut(s)	482
BstHHI	GCGC	2 cut(s)	482, 682
BstKTI	GATC	8 cut(s)	208, 319, 667, 688, 970, 1157, 1276, 1453
BstMAI	GTCTC	6 cut(s)	572, 940, 967, 1018, 1285, 1781
BstMBI	GATC	8 cut(s)	205, 316, 664, 685, 967, 1154, 1273, 1450
BstMWI	GCNNNNNNNGC	3 cut(s)	269, 437, 479
BstNI	CCWGG	5 cut(s)	23, 123, 387, 564, 1487
BstNSI	RCATGY	3 cut(s)	355, 581, 1238
BstPAI	GACNNNNGTC	1 cut(s)	564
BstSCI	CCNGG	5 cut(s)	21, 121, 385, 562, 1485
BstSFI	CTRYAG	1 cut(s)	649
BstSNI	TACGTA	1 cut(s)	871
BstUI	CGCG	1 cut(s)	482
BstV1I	GCAGC	2 cut(s)	311, 830
BstV2I	GAAGAC	1 cut(s)	355
BstX2I	RGATCY	3 cut(s)	316, 1154, 1450
BstYI	RGATCY	3 cut(s)	316, 1154, 1450
BsuI	GTATCC	1 cut(s)	86
BsuRI	GGCC	5 cut(s)	292, 375, 408, 769, 1613
BtgI	CCRYGG	1 cut(s)	882
BtsCI	GGATG	6 cut(s)	697, 813, 856, 1411, 1768, 1805
BtsIMutI	CAGTG	1 cut(s)	86
Cac8I	GCNNGC	4 cut(s)	57, 274, 839, 1890
CaiI	CAGNNNCTG	1 cut(s)	1301
CfoI	GCGC	2 cut(s)	482, 682
Cfr13I	GGNCC	5 cut(s)	102, 559, 767, 941, 1097
CseI	GACGC	2 cut(s)	471, 1644
Csp6I	GTAC	4 cut(s)	6, 148, 830, 872
CviAII	CATG	7 cut(s)	352, 578, 796, 883, 1235, 1322, 1759
CviQI	GTAC	4 cut(s)	6, 148, 830, 872
DdeI	CTNAG	5 cut(s)	44, 259, 543, 1227, 1783
DpnI	GATC	8 cut(s)	207, 318, 666, 687, 969, 1156, 1275, 1452
DpnII	GATC	8 cut(s)	205, 316, 664, 685, 967, 1154, 1273, 1450
EaeI	YGGCCR	2 cut(s)	373, 406
Eam1104I	CTCTTC	1 cut(s)	1464
EarI	CTCTTC	1 cut(s)	1464
Ecl136II	GAGCTC	1 cut(s)	1077
Eco105I	TACGTA	1 cut(s)	871
Eco130I	CCWWGG	3 cut(s)	376, 882, 1730
Eco147I	AGGCCT	2 cut(s)	292, 1613
Eco24I	GRGCYC	1 cut(s)	1079
Eco31I	GGTCTC	2 cut(s)	572, 1285
Eco47I	GGWCC	4 cut(s)	102, 559, 941, 1097
Eco53kI	GAGCTC	1 cut(s)	1077
Eco57I	CTGAAG	4 cut(s)	279, 333, 804, 1880
EcoICRI	GAGCTC	1 cut(s)	1077
EcoNI	CCTNNNNNAGG	1 cut(s)	639
EcoO109I	RGGNCCY	1 cut(s)	559
EcoRII	CCWGG	5 cut(s)	21, 121, 385, 562, 1485
EcoT14I	CCWWGG	3 cut(s)	376, 882, 1730
EcoT22I	ATGCAT	1 cut(s)	1236
EcoT38I	GRGCYC	1 cut(s)	1079
ErhI	CCWWGG	3 cut(s)	376, 882, 1730
FaeI	CATG	7 cut(s)	355, 581, 799, 886, 1238, 1325, 1762
FaqI	GGGAC	5 cut(s)	238, 1110, 1240, 1468, 1891
FatI	CATG	7 cut(s)	351, 577, 795, 882, 1234, 1321, 1758
FbaI	TGATCA	3 cut(s)	205, 685, 967
Fnu4HI	GCNGC	2 cut(s)	300, 819
FokI	GGATG	6 cut(s)	704, 820, 863, 1418, 1775, 1792
FriOI	GRGCYC	1 cut(s)	1079
Fsp4HI	GCNGC	2 cut(s)	300, 819
FspBI	CTAG	6 cut(s)	9, 285, 470, 636, 1751, 1908
GlaI	GCGC	2 cut(s)	481, 681
GluI	GCNGC	2 cut(s)	300, 819
GsaI	CCCAGC	2 cut(s)	536, 1878
GsuI	CTGGAG	1 cut(s)	575
HaeIII	GGCC	5 cut(s)	292, 375, 408, 769, 1613
HapII	CCGG	1 cut(s)	939
HgaI	GACGC	2 cut(s)	471, 1644
HhaI	GCGC	2 cut(s)	482, 682
Hin1II	CATG	7 cut(s)	355, 581, 799, 886, 1238, 1325, 1762
Hin6I	GCGC	2 cut(s)	480, 680
HinP1I	GCGC	2 cut(s)	480, 680
HincII	GTYRAC	1 cut(s)	1494
HindII	GTYRAC	1 cut(s)	1494
HpaII	CCGG	1 cut(s)	939
HphI	GGTGA	7 cut(s)	102, 152, 278, 962, 1283, 1316, 1699
Hpy166II	GTNNAC	3 cut(s)	230, 1494, 1600
Hpy188I	TCNGA	8 cut(s)	45, 492, 518, 967, 1333, 1552, 1833, 1899
Hpy188III	TCNNGA	8 cut(s)	16, 311, 554, 689, 923, 1121, 1250, 1454
Hpy8I	GTNNAC	3 cut(s)	230, 1494, 1600
Hpy99I	CGWCG	1 cut(s)	1660
HpyAV	CCTTC	7 cut(s)	282, 303, 797, 1076, 1338, 1401, 1603
HpyCH4III	ACNGT	6 cut(s)	181, 496, 752, 950, 1667, 1916
HpyCH4IV	ACGT	3 cut(s)	395, 870, 1481
HpyF10VI	GCNNNNNNNGC	3 cut(s)	269, 437, 479
HpyF3I	CTNAG	5 cut(s)	44, 259, 543, 1227, 1783
HpySE526I	ACGT	3 cut(s)	395, 870, 1481
Hsp92II	CATG	7 cut(s)	355, 581, 799, 886, 1238, 1325, 1762
HspAI	GCGC	2 cut(s)	480, 680
Ksp22I	TGATCA	3 cut(s)	205, 685, 967
Kzo9I	GATC	8 cut(s)	205, 316, 664, 685, 967, 1154, 1273, 1450
LmnI	GCTCC	2 cut(s)	18, 84
Lsp1109I	GCAGC	2 cut(s)	311, 830
LweI	GCATC	3 cut(s)	190, 1221, 1877
MaeI	CTAG	6 cut(s)	9, 285, 470, 636, 1751, 1908
MaeII	ACGT	3 cut(s)	395, 870, 1481
MaeIII	GTNAC	5 cut(s)	538, 742, 863, 1616, 1765
MalI	GATC	8 cut(s)	207, 318, 666, 687, 969, 1156, 1275, 1452
MboI	GATC	8 cut(s)	205, 316, 664, 685, 967, 1154, 1273, 1450
MfeI	CAATTG	3 cut(s)	60, 717, 1085
MflI	RGATCY	3 cut(s)	316, 1154, 1450
MhlI	GDGCHC	2 cut(s)	1079, 1711
MlsI	TGGCCA	2 cut(s)	375, 408
MluCI	AATT	8 cut(s)	60, 707, 717, 997, 1085, 1239, 1395, 1713
MluNI	TGGCCA	2 cut(s)	375, 408
MlyI	GAGTC	3 cut(s)	260, 1262, 1499
MmeI	TCCRAC	3 cut(s)	1121, 1162, 1455
Mox20I	TGGCCA	2 cut(s)	375, 408
Mph1103I	ATGCAT	1 cut(s)	1236
MroXI	GAANNNNTTC	1 cut(s)	292
MscI	TGGCCA	2 cut(s)	375, 408
MseI	TTAA	4 cut(s)	165, 582, 860, 1851
Msp20I	TGGCCA	2 cut(s)	375, 408
MspA1I	CMGCKG	4 cut(s)	263, 782, 1557, 1874
MspI	CCGG	1 cut(s)	939
MspR9I	CCNGG	5 cut(s)	23, 123, 387, 564, 1487
MunI	CAATTG	3 cut(s)	60, 717, 1085
MvaI	CCWGG	5 cut(s)	23, 123, 387, 564, 1487
MvnI	CGCG	1 cut(s)	482
MwoI	GCNNNNNNNGC	3 cut(s)	269, 437, 479
NcoI	CCATGG	1 cut(s)	882
NdeII	GATC	8 cut(s)	205, 316, 664, 685, 967, 1154, 1273, 1450
NlaIII	CATG	7 cut(s)	355, 581, 799, 886, 1238, 1325, 1762
NlaIV	GGNNCC	6 cut(s)	14, 561, 603, 1023, 1098, 1389
NmuCI	GTSAC	4 cut(s)	538, 742, 1616, 1765
NsiI	ATGCAT	1 cut(s)	1236
NspI	RCATGY	3 cut(s)	355, 581, 1238
PceI	AGGCCT	2 cut(s)	292, 1613
PciI	ACATGT	1 cut(s)	577
PdmI	GAANNNNTTC	1 cut(s)	292
PfeI	GAWTC	7 cut(s)	40, 788, 887, 1124, 1802, 1822, 1902
PflMI	CCANNNNNTGG	1 cut(s)	1301
PkrI	GCNGC	2 cut(s)	301, 820
PleI	GAGTC	3 cut(s)	259, 1261, 1498
PpsI	GAGTC	3 cut(s)	259, 1261, 1498
Ppu21I	YACGTR	1 cut(s)	871
PpuMI	RGGWCCY	1 cut(s)	559
PscI	ACATGT	1 cut(s)	577
PshAI	GACNNNNGTC	1 cut(s)	564
Psp124BI	GAGCTC	1 cut(s)	1079
Psp1406I	AACGTT	1 cut(s)	395
Psp5II	RGGWCCY	1 cut(s)	559
Psp6I	CCWGG	5 cut(s)	21, 121, 385, 562, 1485
PspFI	CCCAGC	2 cut(s)	532, 1874
PspGI	CCWGG	5 cut(s)	21, 121, 385, 562, 1485
PspN4I	GGNNCC	6 cut(s)	14, 561, 603, 1023, 1098, 1389
PspPI	GGNCC	5 cut(s)	102, 559, 767, 941, 1097
PspPPI	RGGWCCY	1 cut(s)	559
PsrI	GAACNNNNNNTAC	2 cut(s)	1230, 1262
PstNI	CAGNNNCTG	1 cut(s)	1301
PsuI	RGATCY	3 cut(s)	316, 1154, 1450
PvuII	CAGCTG	4 cut(s)	263, 782, 1557, 1874
RsaI	GTAC	4 cut(s)	7, 149, 831, 873
RsaNI	GTAC	4 cut(s)	6, 148, 830, 872
SacI	GAGCTC	1 cut(s)	1079
SaqAI	TTAA	4 cut(s)	165, 582, 860, 1851
SatI	GCNGC	2 cut(s)	300, 819
Sau3AI	GATC	8 cut(s)	205, 316, 664, 685, 967, 1154, 1273, 1450
Sau96I	GGNCC	5 cut(s)	102, 559, 767, 941, 1097
SchI	GAGTC	3 cut(s)	260, 1262, 1499
ScrFI	CCNGG	5 cut(s)	23, 123, 387, 564, 1487
SduI	GDGCHC	2 cut(s)	1079, 1711
SfaNI	GCATC	3 cut(s)	190, 1221, 1877
SfcI	CTRYAG	1 cut(s)	649
SinI	GGWCC	4 cut(s)	102, 559, 941, 1097
SmlI	CTYRAG	3 cut(s)	235, 1250, 1454
SmoI	CTYRAG	3 cut(s)	235, 1250, 1454
SnaBI	TACGTA	1 cut(s)	871
Sse9I	AATT	8 cut(s)	60, 707, 717, 997, 1085, 1239, 1395, 1713
SseBI	AGGCCT	2 cut(s)	292, 1613
SspI	AATATT	1 cut(s)	1864
SspMI	CTAG	6 cut(s)	9, 285, 470, 636, 1751, 1908
SstI	GAGCTC	1 cut(s)	1079
StuI	AGGCCT	2 cut(s)	292, 1613
StyD4I	CCNGG	5 cut(s)	21, 121, 385, 562, 1485
StyI	CCWWGG	3 cut(s)	376, 882, 1730
TaaI	ACNGT	6 cut(s)	181, 496, 752, 950, 1667, 1916
TaiI	ACGT	3 cut(s)	398, 873, 1484
TaqI	TCGA	5 cut(s)	699, 890, 1276, 1658, 1670
TasI	AATT	8 cut(s)	60, 707, 717, 997, 1085, 1239, 1395, 1713
TatI	WGTACW	1 cut(s)	829
TfiI	GAWTC	7 cut(s)	40, 788, 887, 1124, 1802, 1822, 1902
Tru1I	TTAA	4 cut(s)	165, 582, 860, 1851
Tru9I	TTAA	4 cut(s)	165, 582, 860, 1851
TscAI	CASTG	1 cut(s)	86
TseFI	GTSAC	4 cut(s)	538, 742, 1616, 1765
TseI	GCWGC	2 cut(s)	299, 818
Tsp45I	GTSAC	4 cut(s)	538, 742, 1616, 1765
TspDTI	ATGAA	9 cut(s)	700, 780, 784, 824, 1331, 1374, 1443, 1641, 1709
TspRI	CASTG	1 cut(s)	86
Van91I	CCANNNNNTGG	1 cut(s)	1301
VpaK11BI	GGWCC	4 cut(s)	102, 559, 941, 1097
XagI	CCTNNNNNAGG	1 cut(s)	639
XapI	RAATTY	1 cut(s)	707
XceI	RCATGY	3 cut(s)	355, 581, 1238
XcmI	CCANNNNNNNNNTGG	1 cut(s)	493
XmnI	GAANNNNTTC	1 cut(s)	292
XspI	CTAG	6 cut(s)	9, 285, 470, 636, 1751, 1908
Zsp2I	ATGCAT	1 cut(s)	1236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.