Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0006782

Physical Location & Seq

Genomic Coordinates Forward (+)

52707146 .. 52711617

Gene Structure 4472 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00258370.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGGGTACTAGGCTCCAGAACCAGGAGAGAGTGCCAGAGAATCTGAGAAAACAGCTTGCAATTGCTGTGAGAAGTATCCAGTGGAGCTACGCAATCTTCTGGTCCATTTCACCAAGACAGCCAGGGGTCTTGGAGTGGGGTGATGGGTACTACAATGGAGATATTAAGACAAGAAAAACAGTTCAAGCCATAGAACTTGATGCTGATCAAATGGGTTTGCAGAGGAGTGAACACTTGAGAGAACTTTACGAGTCCCTCTCAGCTGGTGAAGCAAGCCCACAAGCTAGAAGGCCTTCAGCAGCATTATCTCCTGAAGATCTTGCTGATACAGAGTGGTATTACTTGGTTTGCATGTCTTTCGTCTTCAACATTGGCCAAGGGTTGCCAGGACGAACGTTAGCGAATGGCCAACCAATCTGGCTATGTAATGCTCATTATGCAGATAGTAAAGTGTTTAGTCGCTCTCTACTAGCAAAGACTGTGGTATGCTTTCCTTTTATGGGAGGTGTGATAGAGCTGGGTGTGACTGAGCTGGTAGGTTCTGGAGGACCCTGGTCTCATTCAACATGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0001101 GO:0001708 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0008544 GO:0009653 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009913 GO:0009957 GO:0009962 GO:0009963 GO:0009987 GO:0010026 GO:0010033 GO:0010090 GO:0010091 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0023052 GO:0030154 GO:0030855 GO:0031323 GO:0031326 GO:0031537 GO:0031539 GO:0031540 GO:0031542 GO:0032502 GO:0032870 GO:0032989 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045165 GO:0048468 GO:0048518 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0060429 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071840 GO:0080090 GO:0090558 GO:0090626 GO:0140110 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH bHLH-MYC_N

Protein Analysis

190

Amino Acids

21.13

Weight (kDa)

5.92

Isoelectric Point (pI)

61.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bHLH-MYC_N	PF14215	15 - 179	7.7e-45	bHLH-MYC and R2R3-MYB transcription factors N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006782)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63650 AT1G63650 AT1G63650 AT5G41315 AT5G41315 AT5G41315
fragaria_vesca	FvH4_5g02520
malus_domestica	MD06G1084400.v1.1 MD14G1105500.v1.1
prunus_persica	Prupe.5G100700_v2.0.a1 Prupe.5G100700_v2.0.a1 Prupe.5G100700_v2.0.a1
pyrus_communis	pycom06g08070 pycom14g10100
rosa_chinensis	RchiOBHm_Chr7g0197531
rosa_laevigata	RLG00000003927
rosa_multiflora	Rmu_sc0007007.1_g000003
rosa_roxburghii	Rroxscaffold_3G00258370
rosa_rugosa	Rorug07G0040800
rosa_samantha	Rh1AG185600 Rh1CG171400 Rh7AG165700 Rh7BG167700 Rh7CG174100 Rh7DG167100
rosa_wichuraiana	Rw7G014420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	395
AcoI	YGGCCR	2 cut(s)	373, 406
AcuI	CTGAAG	2 cut(s)	279, 333
AfaI	GTAC	2 cut(s)	7, 149
AfiI	CCNNNNNNNGG	2 cut(s)	22, 500
AflIII	ACRYGT	1 cut(s)	566
AgsI	TTSAA	3 cut(s)	185, 367, 564
AjnI	CCWGG	4 cut(s)	21, 121, 385, 551
AluBI	AGCT	6 cut(s)	55, 87, 263, 284, 517, 532
AluI	AGCT	6 cut(s)	55, 87, 263, 284, 517, 532
Alw26I	GTCTC	1 cut(s)	561
AoxI	GGCC	3 cut(s)	290, 373, 406
ApeKI	GCWGC	1 cut(s)	299
Asp700I	GAANNNNTTC	1 cut(s)	292
AspS9I	GGNCC	2 cut(s)	102, 548
AsuHPI	GGTGA	3 cut(s)	102, 152, 278
AvaII	GGWCC	2 cut(s)	102, 548
BalI	TGGCCA	2 cut(s)	375, 408
BbsI	GAAGAC	1 cut(s)	355
BbvI	GCAGC	1 cut(s)	311
BccI	CCATC	1 cut(s)	137
BcgI	CGANNNNNNTGC	2 cut(s)	340, 374
BciT130I	CCWGG	4 cut(s)	23, 123, 387, 553
BciVI	GTATCC	1 cut(s)	86
BclI	TGATCA	1 cut(s)	205
BcoDI	GTCTC	1 cut(s)	561
BfaI	CTAG	3 cut(s)	9, 285, 470
BfuI	GTATCC	1 cut(s)	86
BglII	AGATCT	1 cut(s)	316
BisI	GCNGC	1 cut(s)	300
BlsI	GCNGC	1 cut(s)	301
Bme1390I	CCNGG	4 cut(s)	23, 123, 387, 553
Bme18I	GGWCC	2 cut(s)	102, 548
BmgT120I	GGNCC	2 cut(s)	102, 548
BmiI	GGNNCC	2 cut(s)	14, 550
BmrFI	CCNGG	4 cut(s)	23, 123, 387, 553
BmsI	GCATC	1 cut(s)	190
BoxI	GACNNNNGTC	1 cut(s)	553
BpiI	GAAGAC	1 cut(s)	355
BplI	GAGNNNNNCTC	2 cut(s)	242, 274
BpmI	CTGGAG	1 cut(s)	564
BpuEI	CTTGAG	1 cut(s)	256
BsaBI	GATNNNNATC	1 cut(s)	204
BsaI	GGTCTC	1 cut(s)	561
BsaJI	CCNNGG	3 cut(s)	122, 376, 551
Bsc4I	CCNNNNNNNGG	2 cut(s)	22, 500
Bse1I	ACTGG	1 cut(s)	79
Bse8I	GATNNNNATC	1 cut(s)	204
BseBI	CCWGG	4 cut(s)	23, 123, 387, 553
BseDI	CCNNGG	3 cut(s)	122, 376, 551
BseJI	GATNNNNATC	1 cut(s)	204
BseLI	CCNNNNNNNGG	2 cut(s)	22, 500
BseMII	CTCAG	3 cut(s)	35, 273, 519
BseNI	ACTGG	1 cut(s)	79
BseRI	GAGGAG	1 cut(s)	238
BseXI	GCAGC	1 cut(s)	311
BseYI	CCCAGC	1 cut(s)	517
BshFI	GGCC	3 cut(s)	292, 375, 408
BslFI	GGGAC	1 cut(s)	238
BslI	CCNNNNNNNGG	2 cut(s)	22, 500
BsmAI	GTCTC	1 cut(s)	561
BsmFI	GGGAC	1 cut(s)	238
BsnI	GGCC	3 cut(s)	292, 375, 408
Bso31I	GGTCTC	1 cut(s)	561
Bsp143I	GATC	2 cut(s)	205, 316
BspANI	GGCC	3 cut(s)	292, 375, 408
BspCNI	CTCAG	3 cut(s)	36, 272, 520
BspLI	GGNNCC	2 cut(s)	14, 550
BspTNI	GGTCTC	1 cut(s)	561
BsrI	ACTGG	1 cut(s)	79
BssECI	CCNNGG	3 cut(s)	122, 376, 551
BssMI	GATC	2 cut(s)	205, 316
BssT1I	CCWWGG	1 cut(s)	376
Bst2UI	CCWGG	4 cut(s)	23, 123, 387, 553
Bst4CI	ACNGT	2 cut(s)	181, 481
BstC8I	GCNNGC	2 cut(s)	57, 274
BstDEI	CTNAG	3 cut(s)	44, 259, 528
BstKTI	GATC	2 cut(s)	208, 319
BstMAI	GTCTC	1 cut(s)	561
BstMBI	GATC	2 cut(s)	205, 316
BstMWI	GCNNNNNNNGC	2 cut(s)	269, 437
BstNI	CCWGG	4 cut(s)	23, 123, 387, 553
BstNSI	RCATGY	2 cut(s)	355, 570
BstPAI	GACNNNNGTC	1 cut(s)	553
BstSCI	CCNGG	4 cut(s)	21, 121, 385, 551
BstV1I	GCAGC	1 cut(s)	311
BstV2I	GAAGAC	1 cut(s)	355
BstX2I	RGATCY	1 cut(s)	316
BstYI	RGATCY	1 cut(s)	316
BsuI	GTATCC	1 cut(s)	86
BsuRI	GGCC	3 cut(s)	292, 375, 408
BtsIMutI	CAGTG	1 cut(s)	86
Cac8I	GCNNGC	2 cut(s)	57, 274
Cfr13I	GGNCC	2 cut(s)	102, 548
Csp6I	GTAC	2 cut(s)	6, 148
CspCI	CAANNNNNGTGG	2 cut(s)	462, 497
CviAII	CATG	2 cut(s)	352, 567
CviQI	GTAC	2 cut(s)	6, 148
DdeI	CTNAG	3 cut(s)	44, 259, 528
DpnI	GATC	2 cut(s)	207, 318
DpnII	GATC	2 cut(s)	205, 316
EaeI	YGGCCR	2 cut(s)	373, 406
Eco130I	CCWWGG	1 cut(s)	376
Eco147I	AGGCCT	1 cut(s)	292
Eco31I	GGTCTC	1 cut(s)	561
Eco47I	GGWCC	2 cut(s)	102, 548
Eco57I	CTGAAG	2 cut(s)	279, 333
EcoO109I	RGGNCCY	1 cut(s)	548
EcoRII	CCWGG	4 cut(s)	21, 121, 385, 551
EcoT14I	CCWWGG	1 cut(s)	376
ErhI	CCWWGG	1 cut(s)	376
FaeI	CATG	2 cut(s)	355, 570
FaiI	YATR	7 cut(s)	191, 353, 424, 438, 487, 500, 568
FaqI	GGGAC	1 cut(s)	238
FatI	CATG	2 cut(s)	351, 566
FbaI	TGATCA	1 cut(s)	205
Fnu4HI	GCNGC	1 cut(s)	300
Fsp4HI	GCNGC	1 cut(s)	300
FspBI	CTAG	3 cut(s)	9, 285, 470
GluI	GCNGC	1 cut(s)	300
GsaI	CCCAGC	1 cut(s)	521
GsuI	CTGGAG	1 cut(s)	564
HaeIII	GGCC	3 cut(s)	292, 375, 408
Hin1II	CATG	2 cut(s)	355, 570
HinfI	GANTC	2 cut(s)	40, 251
HphI	GGTGA	3 cut(s)	102, 152, 278
Hpy166II	GTNNAC	1 cut(s)	230
Hpy188I	TCNGA	1 cut(s)	45
Hpy188III	TCNNGA	3 cut(s)	16, 311, 543
Hpy8I	GTNNAC	1 cut(s)	230
HpyAV	CCTTC	2 cut(s)	282, 303
HpyCH4III	ACNGT	2 cut(s)	181, 481
HpyCH4IV	ACGT	1 cut(s)	395
HpyCH4V	TGCA	4 cut(s)	59, 220, 351, 440
HpyF10VI	GCNNNNNNNGC	2 cut(s)	269, 437
HpyF3I	CTNAG	3 cut(s)	44, 259, 528
HpySE526I	ACGT	1 cut(s)	395
Hsp92II	CATG	2 cut(s)	355, 570
Ksp22I	TGATCA	1 cut(s)	205
Kzo9I	GATC	2 cut(s)	205, 316
LmnI	GCTCC	2 cut(s)	18, 84
Lsp1109I	GCAGC	1 cut(s)	311
LweI	GCATC	1 cut(s)	190
MaeI	CTAG	3 cut(s)	9, 285, 470
MaeII	ACGT	1 cut(s)	395
MaeIII	GTNAC	1 cut(s)	523
MalI	GATC	2 cut(s)	207, 318
MboI	GATC	2 cut(s)	205, 316
MboII	GAAGA	3 cut(s)	88, 326, 355
MfeI	CAATTG	1 cut(s)	60
MflI	RGATCY	1 cut(s)	316
MlsI	TGGCCA	2 cut(s)	375, 408
MluCI	AATT	1 cut(s)	60
MluNI	TGGCCA	2 cut(s)	375, 408
MlyI	GAGTC	1 cut(s)	260
MnlI	CCTC	4 cut(s)	216, 266, 497, 539
Mox20I	TGGCCA	2 cut(s)	375, 408
MroXI	GAANNNNTTC	1 cut(s)	292
MscI	TGGCCA	2 cut(s)	375, 408
MseI	TTAA	2 cut(s)	165, 571
Msp20I	TGGCCA	2 cut(s)	375, 408
MspA1I	CMGCKG	1 cut(s)	263
MspR9I	CCNGG	4 cut(s)	23, 123, 387, 553
MunI	CAATTG	1 cut(s)	60
MvaI	CCWGG	4 cut(s)	23, 123, 387, 553
MwoI	GCNNNNNNNGC	2 cut(s)	269, 437
NdeII	GATC	2 cut(s)	205, 316
NlaIII	CATG	2 cut(s)	355, 570
NlaIV	GGNNCC	2 cut(s)	14, 550
NmuCI	GTSAC	1 cut(s)	523
NspI	RCATGY	2 cut(s)	355, 570
PceI	AGGCCT	1 cut(s)	292
PciI	ACATGT	1 cut(s)	566
PdmI	GAANNNNTTC	1 cut(s)	292
PfeI	GAWTC	1 cut(s)	40
PkrI	GCNGC	1 cut(s)	301
PleI	GAGTC	1 cut(s)	259
PpsI	GAGTC	1 cut(s)	259
PpuMI	RGGWCCY	1 cut(s)	548
PscI	ACATGT	1 cut(s)	566
PshAI	GACNNNNGTC	1 cut(s)	553
Psp1406I	AACGTT	1 cut(s)	395
Psp5II	RGGWCCY	1 cut(s)	548
Psp6I	CCWGG	4 cut(s)	21, 121, 385, 551
PspFI	CCCAGC	1 cut(s)	517
PspGI	CCWGG	4 cut(s)	21, 121, 385, 551
PspN4I	GGNNCC	2 cut(s)	14, 550
PspPI	GGNCC	2 cut(s)	102, 548
PspPPI	RGGWCCY	1 cut(s)	548
PsuI	RGATCY	1 cut(s)	316
PvuII	CAGCTG	1 cut(s)	263
RsaI	GTAC	2 cut(s)	7, 149
RsaNI	GTAC	2 cut(s)	6, 148
SaqAI	TTAA	2 cut(s)	165, 571
SatI	GCNGC	1 cut(s)	300
Sau3AI	GATC	2 cut(s)	205, 316
Sau96I	GGNCC	2 cut(s)	102, 548
SchI	GAGTC	1 cut(s)	260
ScrFI	CCNGG	4 cut(s)	23, 123, 387, 553
SetI	ASST	9 cut(s)	57, 89, 265, 286, 398, 508, 519, 534, 541
SfaNI	GCATC	1 cut(s)	190
SinI	GGWCC	2 cut(s)	102, 548
SmlI	CTYRAG	1 cut(s)	235
SmoI	CTYRAG	1 cut(s)	235
Sse9I	AATT	1 cut(s)	60
SseBI	AGGCCT	1 cut(s)	292
SspMI	CTAG	3 cut(s)	9, 285, 470
StuI	AGGCCT	1 cut(s)	292
StyD4I	CCNGG	4 cut(s)	21, 121, 385, 551
StyI	CCWWGG	1 cut(s)	376
TaaI	ACNGT	2 cut(s)	181, 481
TaiI	ACGT	1 cut(s)	398
TasI	AATT	1 cut(s)	60
TfiI	GAWTC	1 cut(s)	40
Tru1I	TTAA	2 cut(s)	165, 571
Tru9I	TTAA	2 cut(s)	165, 571
TscAI	CASTG	1 cut(s)	86
TseFI	GTSAC	1 cut(s)	523
TseI	GCWGC	1 cut(s)	299
Tsp45I	GTSAC	1 cut(s)	523
TspRI	CASTG	1 cut(s)	86
VpaK11BI	GGWCC	2 cut(s)	102, 548
XceI	RCATGY	2 cut(s)	355, 570
XmnI	GAANNNNTTC	1 cut(s)	292
XspI	CTAG	3 cut(s)	9, 285, 470

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.