Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0006782

Physical Location & Seq

Genomic Coordinates Reverse (-)

35524497 .. 35526679

Gene Structure 2183 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG185600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

ATGGGAGGTGTGATAGAGCTGGGTGTGACTGAGCTGGTTCTGGAGGACCCCGGTCTCATTCAACACGTTAAAACATCATTTTTGGAGGTTCCATACCCCCTATGTTTGAACACAACCAATCCTAGTGCAGGAAGCTACAGAAATGACAATGATCTTACCAGCTCTGCGCTTGATCAGGATGTTATCGACACCAAATTCATTCCAATTGTAAGATGTGAAGAAATAGATGTGACTTACAGTTCAAATGGGTTCGGGCCAAATCAACCAGCTGAAGATTCATTCATGGTTGAAGGGATGAATGGGGCAGCTTCCCAAGTACAGAGCTGGCAGTATATGGATGATGAGTTAAGTAACTACGTACATCATTCCATGGATTCGAGTGATTGCATATCTCAAACATTGGTATATCCTGAAAAGATTGTCTCCGGTCCTAACGGTGAAAAGGTTGTCTCTGATCATTTTCTGCAAGATCATAAAGAGTGCAATTCCACAAAACAAGTCTCTTTGGCACCTGAAAGCAATGACTTGCATTACCAGAGTGTTCTTTCTTCCCTTCTAAAGAGCTCACACCAATTGATTTTGGGGCCACACTTTCAAAATGGTCGTCAGGAATCCAGCTTTGTGAGTTGGAAGAAAGGAGGATCTGTAAAATGCCGAAAACAACGAGTTGGAAGCCCGCAATACTTGTTGAAGAAGATTTTGTTTGAAGTTCCGAAGATGCATGTAATTTGTGTTCTTGAGTCCCCAGAAGATAATGGTGATCGAAATGGAGTTTGGAGACCAGAAGCTGGTGAAAGTCTTATGAACCATGTATTATCTGAGAGGAAGCGAAGGGAAAAACTAAATGAAAGGTTTTCCATTTTGAAATCTCTGGTGCCTTCAATTCAAAAGGATGACAAAGTAGCCATACTTGATGAAGCAATAGAGTATTTGAAAGATCTTGAGAAAAGAGTTGAAGAGTTGGAAACGTCCCAGGAGTCAACAGATTTAGAGGCAACAATAAAGAGGAAACCCCAAGATAATAGTGAGCAAACATCTGACAGCTGTTGCAACAACAAAAGGAGTAATGGGAAGAAACCATTAGTTTACAAGAGGAAGGCCTGCGACATTGATGAAACAGAACCAGAAATCAACTATGTTGCGTCTAAGAACAGTTCGAGTTACAAAGGCAAAGTGAAAAGAAAGAAATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0001101 GO:0001708 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0008544 GO:0009653 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009913 GO:0009957 GO:0009962 GO:0009963 GO:0009987 GO:0010026 GO:0010033 GO:0010090 GO:0010091 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0023052 GO:0030154 GO:0030855 GO:0031323 GO:0031326 GO:0031537 GO:0031539 GO:0031540 GO:0031542 GO:0032502 GO:0032870 GO:0032989 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045165 GO:0048468 GO:0048518 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0060429 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071840 GO:0080090 GO:0090558 GO:0090626 GO:0140110 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH bHLH-MYC_N

Protein Analysis

397

Amino Acids

44.68

Weight (kDa)

5.6

Isoelectric Point (pI)

54.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	268 - 315	9.1e-14	Helix-loop-helix DNA-binding domain
bHLH_SAC51	PF23173	273 - 318	2.9e-08	Transcription factor SAC51 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006782)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63650 AT1G63650 AT1G63650 AT5G41315 AT5G41315 AT5G41315
fragaria_vesca	FvH4_5g02520
malus_domestica	MD06G1084400.v1.1 MD14G1105500.v1.1
prunus_persica	Prupe.5G100700_v2.0.a1 Prupe.5G100700_v2.0.a1 Prupe.5G100700_v2.0.a1
pyrus_communis	pycom06g08070 pycom14g10100
rosa_chinensis	RchiOBHm_Chr7g0197531
rosa_laevigata	RLG00000003927
rosa_multiflora	Rmu_sc0007007.1_g000003
rosa_roxburghii	Rroxscaffold_3G00258370
rosa_rugosa	Rorug07G0040800
rosa_samantha	Rh1AG185600 Rh1CG171400 Rh7AG165700 Rh7BG167700 Rh7CG174100 Rh7DG167100
rosa_wichuraiana	Rw7G014420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	508, 874
AccB7I	CCANNNNNTGG	1 cut(s)	788
AciI	CCGC	1 cut(s)	677
AclWI	GGATC	1 cut(s)	649
AcsI	RAATTY	2 cut(s)	194, 1187
AcuI	CTGAAG	1 cut(s)	291
AfaI	GTAC	2 cut(s)	318, 360
AfiI	CCNNNNNNNGG	2 cut(s)	128, 788
AflIII	ACRYGT	1 cut(s)	64
AjnI	CCWGG	1 cut(s)	972
AjuI	GAANNNNNNNTTGG	2 cut(s)	757, 789
Alw21I	GWGCWC	1 cut(s)	566
Alw26I	GTCTC	5 cut(s)	59, 427, 454, 505, 772
AlwI	GGATC	1 cut(s)	649
AlwNI	CAGNNNCTG	1 cut(s)	788
AoxI	GGCC	3 cut(s)	254, 584, 1098
ApeKI	GCWGC	1 cut(s)	305
ApoI	RAATTY	2 cut(s)	194, 1187
ArsI	GACNNNNNNTTYG	2 cut(s)	589, 621
AspLEI	GCGC	1 cut(s)	169
AspS9I	GGNCC	4 cut(s)	46, 254, 428, 584
AsuC2I	CCSGG	1 cut(s)	51
AsuHPI	GGTGA	3 cut(s)	449, 770, 803
AvaII	GGWCC	2 cut(s)	46, 428
BanI	GGYRCC	2 cut(s)	508, 874
BanII	GRGCYC	1 cut(s)	566
Bbv12I	GWGCWC	1 cut(s)	566
BbvI	GCAGC	1 cut(s)	317
BciT130I	CCWGG	1 cut(s)	974
BclI	TGATCA	2 cut(s)	172, 454
BcnI	CCSGG	1 cut(s)	51
BcoDI	GTCTC	5 cut(s)	59, 427, 454, 505, 772
BfaI	CTAG	1 cut(s)	123
BfmI	CTRYAG	1 cut(s)	136
BglII	AGATCT	1 cut(s)	937
BisI	GCNGC	1 cut(s)	306
BlsI	GCNGC	1 cut(s)	307
Bme1390I	CCNGG	2 cut(s)	51, 974
Bme18I	GGWCC	2 cut(s)	46, 428
BmgT120I	GGNCC	4 cut(s)	46, 254, 428, 584
BmiI	GGNNCC	5 cut(s)	48, 90, 510, 585, 876
BmrFI	CCNGG	2 cut(s)	51, 974
BmsI	GCATC	1 cut(s)	708
BoxI	GACNNNNGTC	1 cut(s)	51
BpmI	CTGGAG	1 cut(s)	62
BpuEI	CTTGAG	2 cut(s)	758, 962
BpuMI	CCSGG	1 cut(s)	51
BsaAI	YACGTR	1 cut(s)	358
BsaI	GGTCTC	2 cut(s)	59, 772
BsaJI	CCNNGG	3 cut(s)	49, 369, 972
BsaWI	WCCGGW	1 cut(s)	425
BsaXI	ACNNNNNCTCC	2 cut(s)	630, 660
Bsc4I	CCNNNNNNNGG	2 cut(s)	128, 788
Bse3DI	GCAATG	1 cut(s)	526
BseBI	CCWGG	1 cut(s)	974
BseDI	CCNNGG	3 cut(s)	49, 369, 972
BseGI	GGATG	4 cut(s)	184, 300, 343, 898
BseLI	CCNNNNNNNGG	2 cut(s)	128, 788
BseMI	GCAATG	1 cut(s)	526
BseMII	CTCAG	2 cut(s)	21, 810
BseXI	GCAGC	1 cut(s)	317
BseYI	CCCAGC	1 cut(s)	19
BsgI	GTGCAG	1 cut(s)	147
BshFI	GGCC	3 cut(s)	256, 586, 1100
BshNI	GGYRCC	2 cut(s)	508, 874
BsiHKAI	GWGCWC	1 cut(s)	566
BsiSI	CCGG	2 cut(s)	51, 426
BslFI	GGGAC	2 cut(s)	727, 955
BslI	CCNNNNNNNGG	2 cut(s)	128, 788
BsmAI	GTCTC	5 cut(s)	59, 427, 454, 505, 772
BsmFI	GGGAC	2 cut(s)	727, 955
BsnI	GGCC	3 cut(s)	256, 586, 1100
Bso31I	GGTCTC	2 cut(s)	59, 772
Bsp1286I	GDGCHC	1 cut(s)	566
Bsp143I	GATC	7 cut(s)	151, 172, 454, 469, 641, 760, 937
Bsp19I	CCATGG	1 cut(s)	369
BspACI	CCGC	1 cut(s)	677
BspANI	GGCC	3 cut(s)	256, 586, 1100
BspCNI	CTCAG	2 cut(s)	22, 811
BspLI	GGNNCC	5 cut(s)	48, 90, 510, 585, 876
BspPI	GGATC	1 cut(s)	649
BspT107I	GGYRCC	2 cut(s)	508, 874
BspTNI	GGTCTC	2 cut(s)	59, 772
BsrDI	GCAATG	1 cut(s)	526
BssECI	CCNNGG	3 cut(s)	49, 369, 972
BssMI	GATC	7 cut(s)	151, 172, 454, 469, 641, 760, 937
BssT1I	CCWWGG	1 cut(s)	369
Bst2UI	CCWGG	1 cut(s)	974
Bst4CI	ACNGT	3 cut(s)	239, 437, 1154
Bst6I	CTCTTC	1 cut(s)	951
BstBAI	YACGTR	1 cut(s)	358
BstC8I	GCNNGC	3 cut(s)	326, 677, 1102
BstDEI	CTNAG	3 cut(s)	30, 819, 1146
BstDSI	CCRYGG	1 cut(s)	369
BstENI	CCTNNNNNAGG	1 cut(s)	126
BstF5I	GGATG	4 cut(s)	184, 300, 343, 898
BstHHI	GCGC	1 cut(s)	169
BstKTI	GATC	7 cut(s)	154, 175, 457, 472, 644, 763, 940
BstMAI	GTCTC	5 cut(s)	59, 427, 454, 505, 772
BstMBI	GATC	7 cut(s)	151, 172, 454, 469, 641, 760, 937
BstNI	CCWGG	1 cut(s)	974
BstNSI	RCATGY	1 cut(s)	725
BstPAI	GACNNNNGTC	1 cut(s)	51
BstSCI	CCNGG	2 cut(s)	49, 972
BstSFI	CTRYAG	1 cut(s)	136
BstSNI	TACGTA	1 cut(s)	358
BstV1I	GCAGC	1 cut(s)	317
BstX2I	RGATCY	2 cut(s)	641, 937
BstYI	RGATCY	2 cut(s)	641, 937
BsuRI	GGCC	3 cut(s)	256, 586, 1100
BtgI	CCRYGG	1 cut(s)	369
BtsCI	GGATG	4 cut(s)	184, 300, 343, 898
Cac8I	GCNNGC	3 cut(s)	326, 677, 1102
CaiI	CAGNNNCTG	1 cut(s)	788
CfoI	GCGC	1 cut(s)	169
Cfr13I	GGNCC	4 cut(s)	46, 254, 428, 584
CseI	GACGC	1 cut(s)	1131
Csp6I	GTAC	2 cut(s)	317, 359
CviAII	CATG	4 cut(s)	283, 370, 722, 809
CviQI	GTAC	2 cut(s)	317, 359
DdeI	CTNAG	3 cut(s)	30, 819, 1146
DpnI	GATC	7 cut(s)	153, 174, 456, 471, 643, 762, 939
DpnII	GATC	7 cut(s)	151, 172, 454, 469, 641, 760, 937
Eam1104I	CTCTTC	1 cut(s)	951
EarI	CTCTTC	1 cut(s)	951
Ecl136II	GAGCTC	1 cut(s)	564
Eco105I	TACGTA	1 cut(s)	358
Eco130I	CCWWGG	1 cut(s)	369
Eco147I	AGGCCT	1 cut(s)	1100
Eco24I	GRGCYC	1 cut(s)	566
Eco31I	GGTCTC	2 cut(s)	59, 772
Eco47I	GGWCC	2 cut(s)	46, 428
Eco53kI	GAGCTC	1 cut(s)	564
Eco57I	CTGAAG	1 cut(s)	291
EcoICRI	GAGCTC	1 cut(s)	564
EcoNI	CCTNNNNNAGG	1 cut(s)	126
EcoO109I	RGGNCCY	1 cut(s)	46
EcoRII	CCWGG	1 cut(s)	972
EcoT14I	CCWWGG	1 cut(s)	369
EcoT22I	ATGCAT	1 cut(s)	723
EcoT38I	GRGCYC	1 cut(s)	566
ErhI	CCWWGG	1 cut(s)	369
FaeI	CATG	4 cut(s)	286, 373, 725, 812
FaqI	GGGAC	2 cut(s)	727, 955
FatI	CATG	4 cut(s)	282, 369, 721, 808
FauI	CCCGC	1 cut(s)	684
FbaI	TGATCA	2 cut(s)	172, 454
Fnu4HI	GCNGC	1 cut(s)	306
FokI	GGATG	4 cut(s)	191, 307, 350, 905
FriOI	GRGCYC	1 cut(s)	566
Fsp4HI	GCNGC	1 cut(s)	306
FspBI	CTAG	1 cut(s)	123
GlaI	GCGC	1 cut(s)	168
GluI	GCNGC	1 cut(s)	306
GsaI	CCCAGC	1 cut(s)	23
GsuI	CTGGAG	1 cut(s)	62
HaeIII	GGCC	3 cut(s)	256, 586, 1100
HapII	CCGG	2 cut(s)	51, 426
HgaI	GACGC	1 cut(s)	1131
HhaI	GCGC	1 cut(s)	169
Hin1II	CATG	4 cut(s)	286, 373, 725, 812
Hin6I	GCGC	1 cut(s)	167
HinP1I	GCGC	1 cut(s)	167
HincII	GTYRAC	1 cut(s)	981
HindII	GTYRAC	1 cut(s)	981
HinfI	GANTC	5 cut(s)	275, 374, 611, 740, 977
HpaII	CCGG	2 cut(s)	51, 426
HphI	GGTGA	3 cut(s)	449, 770, 803
Hpy166II	GTNNAC	2 cut(s)	981, 1087
Hpy188I	TCNGA	4 cut(s)	454, 714, 820, 1039
Hpy188III	TCNNGA	6 cut(s)	41, 176, 410, 608, 737, 941
Hpy8I	GTNNAC	2 cut(s)	981, 1087
HpyAV	CCTTC	5 cut(s)	284, 563, 825, 888, 1090
HpyCH4III	ACNGT	3 cut(s)	239, 437, 1154
HpyCH4IV	ACGT	3 cut(s)	66, 357, 968
HpyCH4V	TGCA	7 cut(s)	128, 387, 466, 483, 529, 721, 1050
HpyF3I	CTNAG	3 cut(s)	30, 819, 1146
HpySE526I	ACGT	3 cut(s)	66, 357, 968
Hsp92II	CATG	4 cut(s)	286, 373, 725, 812
HspAI	GCGC	1 cut(s)	167
Ksp22I	TGATCA	2 cut(s)	172, 454
Kzo9I	GATC	7 cut(s)	151, 172, 454, 469, 641, 760, 937
Lsp1109I	GCAGC	1 cut(s)	317
LweI	GCATC	1 cut(s)	708
MaeI	CTAG	1 cut(s)	123
MaeII	ACGT	3 cut(s)	66, 357, 968
MaeIII	GTNAC	4 cut(s)	25, 229, 350, 1160
MalI	GATC	7 cut(s)	153, 174, 456, 471, 643, 762, 939
MboI	GATC	7 cut(s)	151, 172, 454, 469, 641, 760, 937
MfeI	CAATTG	2 cut(s)	204, 572
MflI	RGATCY	2 cut(s)	641, 937
MhlI	GDGCHC	1 cut(s)	566
MluCI	AATT	7 cut(s)	194, 204, 484, 572, 726, 882, 1187
MlyI	GAGTC	2 cut(s)	749, 986
MmeI	TCCRAC	3 cut(s)	608, 649, 942
MnlI	CCTC	7 cut(s)	37, 79, 632, 816, 985, 999, 1086
Mph1103I	ATGCAT	1 cut(s)	723
MseI	TTAA	2 cut(s)	69, 347
MspA1I	CMGCKG	2 cut(s)	269, 1044
MspI	CCGG	2 cut(s)	51, 426
MspR9I	CCNGG	2 cut(s)	51, 974
MunI	CAATTG	2 cut(s)	204, 572
MvaI	CCWGG	1 cut(s)	974
NciI	CCSGG	1 cut(s)	51
NcoI	CCATGG	1 cut(s)	369
NdeII	GATC	7 cut(s)	151, 172, 454, 469, 641, 760, 937
NlaIII	CATG	4 cut(s)	286, 373, 725, 812
NlaIV	GGNNCC	5 cut(s)	48, 90, 510, 585, 876
NmuCI	GTSAC	2 cut(s)	25, 229
NsiI	ATGCAT	1 cut(s)	723
NspI	RCATGY	1 cut(s)	725
PceI	AGGCCT	1 cut(s)	1100
PfeI	GAWTC	3 cut(s)	275, 374, 611
PflMI	CCANNNNNTGG	1 cut(s)	788
PkrI	GCNGC	1 cut(s)	307
PleI	GAGTC	2 cut(s)	748, 985
PpsI	GAGTC	2 cut(s)	748, 985
Ppu21I	YACGTR	1 cut(s)	358
PpuMI	RGGWCCY	1 cut(s)	46
PshAI	GACNNNNGTC	1 cut(s)	51
Psp124BI	GAGCTC	1 cut(s)	566
Psp5II	RGGWCCY	1 cut(s)	46
Psp6I	CCWGG	1 cut(s)	972
PspFI	CCCAGC	1 cut(s)	19
PspGI	CCWGG	1 cut(s)	972
PspN4I	GGNNCC	5 cut(s)	48, 90, 510, 585, 876
PspPI	GGNCC	4 cut(s)	46, 254, 428, 584
PspPPI	RGGWCCY	1 cut(s)	46
PsrI	GAACNNNNNNTAC	2 cut(s)	717, 749
PstNI	CAGNNNCTG	1 cut(s)	788
PsuI	RGATCY	2 cut(s)	641, 937
PvuII	CAGCTG	2 cut(s)	269, 1044
RsaI	GTAC	2 cut(s)	318, 360
RsaNI	GTAC	2 cut(s)	317, 359
SacI	GAGCTC	1 cut(s)	566
SaqAI	TTAA	2 cut(s)	69, 347
SatI	GCNGC	1 cut(s)	306
Sau3AI	GATC	7 cut(s)	151, 172, 454, 469, 641, 760, 937
Sau96I	GGNCC	4 cut(s)	46, 254, 428, 584
SchI	GAGTC	2 cut(s)	749, 986
ScrFI	CCNGG	2 cut(s)	51, 974
SduI	GDGCHC	1 cut(s)	566
SfaNI	GCATC	1 cut(s)	708
SfcI	CTRYAG	1 cut(s)	136
SinI	GGWCC	2 cut(s)	46, 428
SmlI	CTYRAG	2 cut(s)	737, 941
SmoI	CTYRAG	2 cut(s)	737, 941
SnaBI	TACGTA	1 cut(s)	358
Sse9I	AATT	7 cut(s)	194, 204, 484, 572, 726, 882, 1187
SseBI	AGGCCT	1 cut(s)	1100
SsiI	CCGC	1 cut(s)	677
SspMI	CTAG	1 cut(s)	123
SstI	GAGCTC	1 cut(s)	566
StuI	AGGCCT	1 cut(s)	1100
StyD4I	CCNGG	2 cut(s)	49, 972
StyI	CCWWGG	1 cut(s)	369
TaaI	ACNGT	3 cut(s)	239, 437, 1154
TaiI	ACGT	3 cut(s)	69, 360, 971
TaqI	TCGA	4 cut(s)	186, 377, 763, 1157
TasI	AATT	7 cut(s)	194, 204, 484, 572, 726, 882, 1187
TatI	WGTACW	1 cut(s)	316
TfiI	GAWTC	3 cut(s)	275, 374, 611
Tru1I	TTAA	2 cut(s)	69, 347
Tru9I	TTAA	2 cut(s)	69, 347
TseFI	GTSAC	2 cut(s)	25, 229
TseI	GCWGC	1 cut(s)	305
Tsp45I	GTSAC	2 cut(s)	25, 229
TspDTI	ATGAA	8 cut(s)	187, 267, 271, 311, 818, 861, 930, 1128
Van91I	CCANNNNNTGG	1 cut(s)	788
VpaK11BI	GGWCC	2 cut(s)	46, 428
XagI	CCTNNNNNAGG	1 cut(s)	126
XapI	RAATTY	2 cut(s)	194, 1187
XceI	RCATGY	1 cut(s)	725
XspI	CTAG	1 cut(s)	123
Zsp2I	ATGCAT	1 cut(s)	723

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.