Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008777

Physical Location & Seq

Genomic Coordinates Reverse (-)

23808835 .. 23812725

Gene Structure 3891 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G64150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGCTAAGTTTGAATCTCTCGGAGTCGCTTCGCATTCCATTCCAGAACCCTAGGCCTCCCAAATCCGATTTTTCTTCTACTTCTTCTTCTCCTTCCTCATCGTCGAGGAGATGCGTCTCCGCTTATCCAATTCCGATCGGGTTTTCGGTTCGTAATCAATACTTTTCTAGATGTTTGACTCAATTGCGTCGAAATGAATCTCAGCAGCTAGGTTTTCGATGCTTCCAACGAAACGATGCGGCTTGTTACCTCGAGAAAGCTGAGTCTGAAGAGCATGATAGAAATCTTGATGTTCTGGTTGAGTCATCGATAGCTCACTCAAGAAGAGAGATTCAGAGAGTTCTTATGTTCTTGGCGGTATCAGGTTCGGTTGCATTACTAGGCACTGATCCAGCTTTTGCAGCTTCGTCAATTCCCAATGTGACACAGTCACTTGTCACTTCTTTTGGAGACCTTGGAGATATTAGCTCAGGTTTTGCTTCGGCTTTCTTGCTTATCTTTTTCTCTGAACTTGGAGACAAGACTTTCTTCATTGCGGCCCTTTTAGCAGCAAGGAACTCTGCTGCTACCGTATTCGTGGGGACTTTTGGCGCTCTAGGGATAATGACGATAATATCTGTAGTGCTTGGACGCACTTTCCACTATGTCGATGAAGTTCTTCCATTCAGGTTTGGTGGAACCGATTTGCCTATAGATGATATTGCAGCAGTTTGTCTTCTGGTGTACTTCGGTGTTTCAACGTTATTAGATGCTGTTTCAGACGAGGGTAAAGCTGACGAAGAACAGAAAGAAGCAGAACTAGCGGTTTCAGAGCTTTCAGGTAATGGAGCCGGGATAGTAGCAGCCGCGAACACCATCATCAGCACTTTCGCATTGGTTTTTGTTGCGGAATGGGGTGACAAATCCTTCTTCTCAACAATTGCTCTTGCGGCTGCATCATCACCATTGGGTGTCATCGCTGGAGCGTTGGCGGGTCACGGTGCTGCGACTCTTCTTGCAGTATTGGGCGGTTCTTTGCTAGGAAATTTCTTATCAGAGAAGGCAATTGCTTATGTCGGAGGAGTTCTGTTTCTCGTGTTTGCTGCTGTGACGGTGGCTGAGATCGTTACGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005384 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006828 GO:0008150 GO:0008152 GO:0008324 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0010207 GO:0010270 GO:0015075 GO:0015095 GO:0015318 GO:0015693 GO:0015979 GO:0016020 GO:0016043 GO:0019684 GO:0022607 GO:0022857 GO:0022890 GO:0030001 GO:0031976 GO:0031984 GO:0034220 GO:0034357 GO:0034622 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0046915 GO:0051179 GO:0051234 GO:0055035 GO:0055085 GO:0065003 GO:0070838 GO:0071421 GO:0071840 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1903830

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UPF0016

Protein Analysis

370

Amino Acids

39.07

Weight (kDa)

4.88

Isoelectric Point (pI)

36.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GDT1	PF01169	161 - 218	3.5e-17	Divalent cation/proton antiporter GDT1
GDT1	PF01169	288 - 361	1.4e-22	Divalent cation/proton antiporter GDT1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008777)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64150
fragaria_vesca	FvH4_5g03670 FvH4_5g03670 FvH4_5g03670 FvH4_5g03670 FvH4_5g03670
malus_domestica	MD06G1096200.v1.1
prunus_persica	Prupe.5G110800_v2.0.a1 Prupe.5G110800_v2.0.a1
pyrus_communis	pycom06g09250
rosa_chinensis	RchiOBHm_Chr7g0196061
rosa_laevigata	RLG00000004069
rosa_multiflora	Rmu_sc0001640.1_g000008
rosa_roxburghii	Rroxscaffold_3G00259890
rosa_rugosa	Rorug07G0029500 Rorug07G0029600 Rorug07G0029700 Rorug07G0029700
rosa_samantha	Rh7AG156100 Rh7BG157800 Rh7CG161500 Rh7DG157000
rosa_wichuraiana	Rw7G013340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	848
AclI	AACGTT	1 cut(s)	740
AclWI	GGATC	1 cut(s)	383
AcsI	RAATTY	1 cut(s)	1024
AcuI	CTGAAG	1 cut(s)	288
AfaI	GTAC	1 cut(s)	725
AgsI	TTSAA	2 cut(s)	13, 738
AluBI	AGCT	8 cut(s)	208, 260, 314, 395, 404, 468, 773, 814
AluI	AGCT	8 cut(s)	208, 260, 314, 395, 404, 468, 773, 814
Alw26I	GTCTC	3 cut(s)	121, 444, 510
AlwI	GGATC	1 cut(s)	383
Ama87I	CYCGRG	1 cut(s)	251
AoxI	GGCC	2 cut(s)	53, 537
ApeKI	GCWGC	9 cut(s)	205, 401, 548, 563, 704, 842, 932, 983, 1082
ApoI	RAATTY	1 cut(s)	1024
Asp700I	GAANNNNTTC	1 cut(s)	657
AspA2I	CCTAGG	1 cut(s)	50
AspLEI	GCGC	1 cut(s)	593
AspS9I	GGNCC	1 cut(s)	538
AsuC2I	CCSGG	1 cut(s)	832
AsuHPI	GGTGA	2 cut(s)	908, 933
AvaI	CYCGRG	1 cut(s)	251
AvrII	CCTAGG	1 cut(s)	50
BauI	CACGAG	1 cut(s)	1073
BbsI	GAAGAC	1 cut(s)	707
BbvI	GCAGC	9 cut(s)	217, 413, 550, 560, 716, 854, 919, 970, 1069
BccI	CCATC	1 cut(s)	863
BcnI	CCSGG	1 cut(s)	832
BcoDI	GTCTC	3 cut(s)	121, 444, 510
BfaI	CTAG	7 cut(s)	51, 168, 209, 380, 596, 800, 1019
BfmI	CTRYAG	2 cut(s)	618, 690
BfoI	RGCGCY	1 cut(s)	594
BlnI	CCTAGG	1 cut(s)	50
Bme1390I	CCNGG	1 cut(s)	832
BmeT110I	CYCGRG	1 cut(s)	251
BmgT120I	GGNCC	1 cut(s)	538
BmiI	GGNNCC	2 cut(s)	679, 829
BmrFI	CCNGG	1 cut(s)	832
BmsI	GCATC	5 cut(s)	101, 209, 226, 739, 944
BpiI	GAAGAC	1 cut(s)	707
BpmI	CTGGAG	1 cut(s)	981
Bpu10I	CCTNAGC	1 cut(s)	469
BpuEI	CTTGAG	1 cut(s)	304
BpuMI	CCSGG	1 cut(s)	832
Bsa29I	ATCGAT	1 cut(s)	308
BsaAI	YACGTR	1 cut(s)	1110
BsaBI	GATNNNNATC	1 cut(s)	282
BsaI	GGTCTC	1 cut(s)	444
BsaJI	CCNNGG	2 cut(s)	50, 454
Bse3DI	GCAATG	1 cut(s)	531
Bse8I	GATNNNNATC	1 cut(s)	282
BseCI	ATCGAT	1 cut(s)	308
BseDI	CCNNGG	2 cut(s)	50, 454
BseJI	GATNNNNATC	1 cut(s)	282
BseMI	GCAATG	1 cut(s)	531
BseMII	CTCAG	4 cut(s)	215, 252, 483, 1089
BseRI	GAGGAG	2 cut(s)	121, 1074
BseXI	GCAGC	9 cut(s)	217, 413, 550, 560, 716, 854, 919, 970, 1069
Bsh1236I	CGCG	1 cut(s)	848
Bsh1285I	CGRYCG	1 cut(s)	138
BshFI	GGCC	2 cut(s)	55, 539
BshVI	ATCGAT	1 cut(s)	308
BsiEI	CGRYCG	1 cut(s)	138
BsiHKCI	CYCGRG	1 cut(s)	251
BsiSI	CCGG	1 cut(s)	831
BslFI	GGGAC	1 cut(s)	595
BsmAI	GTCTC	3 cut(s)	121, 444, 510
BsmBI	CGTCTC	1 cut(s)	121
BsmFI	GGGAC	1 cut(s)	595
BsmI	GAATGC	1 cut(s)	33
BsnI	GGCC	2 cut(s)	55, 539
Bso31I	GGTCTC	1 cut(s)	444
BsoBI	CYCGRG	1 cut(s)	251
Bsp143I	GATC	3 cut(s)	135, 388, 1101
BspANI	GGCC	2 cut(s)	55, 539
BspCNI	CTCAG	4 cut(s)	214, 253, 482, 1090
BspDI	ATCGAT	1 cut(s)	308
BspFNI	CGCG	1 cut(s)	848
BspLI	GGNNCC	2 cut(s)	679, 829
BspPI	GGATC	1 cut(s)	383
BspQI	GCTCTTC	1 cut(s)	264
BspTNI	GGTCTC	1 cut(s)	444
BsrDI	GCAATG	1 cut(s)	531
BssECI	CCNNGG	2 cut(s)	50, 454
BssMI	GATC	3 cut(s)	135, 388, 1101
BssSI	CACGAG	1 cut(s)	1073
BssT1I	CCWWGG	2 cut(s)	50, 454
Bst2BI	CACGAG	1 cut(s)	1073
Bst4CI	ACNGT	4 cut(s)	429, 571, 980, 1093
Bst6I	CTCTTC	3 cut(s)	264, 319, 996
BstBAI	YACGTR	1 cut(s)	1110
BstDEI	CTNAG	5 cut(s)	5, 201, 261, 469, 1098
BstFNI	CGCG	1 cut(s)	848
BstH2I	RGCGCY	1 cut(s)	594
BstHHI	GCGC	1 cut(s)	593
BstKTI	GATC	3 cut(s)	138, 391, 1104
BstMAI	GTCTC	3 cut(s)	121, 444, 510
BstMBI	GATC	3 cut(s)	135, 388, 1101
BstMCI	CGRYCG	1 cut(s)	138
BstMWI	GCNNNNNNNGC	4 cut(s)	401, 545, 800, 929
BstSCI	CCNGG	1 cut(s)	830
BstSFI	CTRYAG	2 cut(s)	618, 690
BstSNI	TACGTA	1 cut(s)	1110
BstUI	CGCG	1 cut(s)	848
BstV1I	GCAGC	9 cut(s)	217, 413, 550, 560, 716, 854, 919, 970, 1069
BstV2I	GAAGAC	1 cut(s)	707
Bsu15I	ATCGAT	1 cut(s)	308
BsuRI	GGCC	2 cut(s)	55, 539
BsuTUI	ATCGAT	1 cut(s)	308
BtgZI	GCGATG	1 cut(s)	940
BtsIMutI	CAGTG	1 cut(s)	384
CfoI	GCGC	1 cut(s)	593
Cfr13I	GGNCC	1 cut(s)	538
ClaI	ATCGAT	1 cut(s)	308
CseI	GACGC	3 cut(s)	103, 176, 639
Csp6I	GTAC	1 cut(s)	724
CviAII	CATG	1 cut(s)	275
CviQI	GTAC	1 cut(s)	724
DdeI	CTNAG	5 cut(s)	5, 201, 261, 469, 1098
DpnI	GATC	3 cut(s)	137, 390, 1103
DpnII	GATC	3 cut(s)	135, 388, 1101
Eam1104I	CTCTTC	3 cut(s)	264, 319, 996
EarI	CTCTTC	3 cut(s)	264, 319, 996
Eco105I	TACGTA	1 cut(s)	1110
Eco130I	CCWWGG	2 cut(s)	50, 454
Eco147I	AGGCCT	1 cut(s)	55
Eco31I	GGTCTC	1 cut(s)	444
Eco57I	CTGAAG	1 cut(s)	288
Eco88I	CYCGRG	1 cut(s)	251
EcoT14I	CCWWGG	2 cut(s)	50, 454
ErhI	CCWWGG	2 cut(s)	50, 454
Esp3I	CGTCTC	1 cut(s)	121
FaeI	CATG	1 cut(s)	278
FaiI	YATR	5 cut(s)	276, 347, 645, 692, 1053
FalI	AAGNNNNNCTT	2 cut(s)	512, 544
FaqI	GGGAC	1 cut(s)	595
FatI	CATG	1 cut(s)	274
FauI	CCCGC	1 cut(s)	964
FspBI	CTAG	7 cut(s)	51, 168, 209, 380, 596, 800, 1019
GlaI	GCGC	1 cut(s)	592
GsuI	CTGGAG	1 cut(s)	981
HaeII	RGCGCY	1 cut(s)	594
HaeIII	GGCC	2 cut(s)	55, 539
HapII	CCGG	1 cut(s)	831
HgaI	GACGC	3 cut(s)	103, 176, 639
HhaI	GCGC	1 cut(s)	593
Hin1II	CATG	1 cut(s)	278
Hin6I	GCGC	1 cut(s)	591
HinP1I	GCGC	1 cut(s)	591
HinfI	GANTC	8 cut(s)	13, 23, 178, 197, 263, 302, 331, 988
HpaII	CCGG	1 cut(s)	831
HphI	GGTGA	2 cut(s)	908, 933
Hpy166II	GTNNAC	1 cut(s)	724
Hpy188III	TCNNGA	5 cut(s)	43, 168, 253, 287, 321
Hpy8I	GTNNAC	1 cut(s)	724
Hpy99I	CGWCG	2 cut(s)	106, 192
HpyAV	CCTTC	3 cut(s)	102, 916, 1033
HpyCH4III	ACNGT	4 cut(s)	429, 571, 980, 1093
HpyCH4IV	ACGT	2 cut(s)	740, 1109
HpyCH4V	TGCA	5 cut(s)	374, 401, 704, 935, 998
HpyF10VI	GCNNNNNNNGC	4 cut(s)	401, 545, 800, 929
HpyF3I	CTNAG	5 cut(s)	5, 201, 261, 469, 1098
HpySE526I	ACGT	2 cut(s)	740, 1109
Hsp92II	CATG	1 cut(s)	278
HspAI	GCGC	1 cut(s)	591
Kzo9I	GATC	3 cut(s)	135, 388, 1101
LguI	GCTCTTC	1 cut(s)	264
LmnI	GCTCC	2 cut(s)	827, 962
Lsp1109I	GCAGC	9 cut(s)	217, 413, 550, 560, 716, 854, 919, 970, 1069
LweI	GCATC	5 cut(s)	101, 209, 226, 739, 944
MaeI	CTAG	7 cut(s)	51, 168, 209, 380, 596, 800, 1019
MaeII	ACGT	2 cut(s)	740, 1109
MaeIII	GTNAC	8 cut(s)	245, 421, 429, 436, 896, 974, 1087, 1105
MalI	GATC	3 cut(s)	137, 390, 1103
MboI	GATC	3 cut(s)	135, 388, 1101
MfeI	CAATTG	3 cut(s)	182, 918, 1044
MluCI	AATT	6 cut(s)	129, 182, 411, 918, 1024, 1044
MlyI	GAGTC	5 cut(s)	32, 172, 272, 311, 982
MmeI	TCCRAC	2 cut(s)	250, 1036
MnlI	CCTC	6 cut(s)	66, 99, 106, 260, 757, 1052
MroXI	GAANNNNTTC	1 cut(s)	657
MspI	CCGG	1 cut(s)	831
MspR9I	CCNGG	1 cut(s)	832
MunI	CAATTG	3 cut(s)	182, 918, 1044
Mva1269I	GAATGC	1 cut(s)	33
MvnI	CGCG	1 cut(s)	848
MwoI	GCNNNNNNNGC	4 cut(s)	401, 545, 800, 929
NciI	CCSGG	1 cut(s)	832
NdeII	GATC	3 cut(s)	135, 388, 1101
NlaIII	CATG	1 cut(s)	278
NlaIV	GGNNCC	2 cut(s)	679, 829
NmuCI	GTSAC	6 cut(s)	421, 429, 436, 896, 974, 1087
PaeR7I	CTCGAG	1 cut(s)	251
PceI	AGGCCT	1 cut(s)	55
PciSI	GCTCTTC	1 cut(s)	264
PctI	GAATGC	1 cut(s)	33
PdmI	GAANNNNTTC	1 cut(s)	657
PfeI	GAWTC	3 cut(s)	13, 197, 331
PflFI	GACNNNGTC	1 cut(s)	427
Ple19I	CGATCG	1 cut(s)	138
PleI	GAGTC	5 cut(s)	31, 172, 271, 310, 982
PpsI	GAGTC	5 cut(s)	31, 172, 271, 310, 982
Ppu21I	YACGTR	1 cut(s)	1110
Psp1406I	AACGTT	1 cut(s)	740
PspN4I	GGNNCC	2 cut(s)	679, 829
PspPI	GGNCC	1 cut(s)	538
PsyI	GACNNNGTC	1 cut(s)	427
PvuI	CGATCG	1 cut(s)	138
RsaI	GTAC	1 cut(s)	725
RsaNI	GTAC	1 cut(s)	724
SapI	GCTCTTC	1 cut(s)	264
Sau3AI	GATC	3 cut(s)	135, 388, 1101
Sau96I	GGNCC	1 cut(s)	538
SchI	GAGTC	5 cut(s)	32, 172, 272, 311, 982
ScrFI	CCNGG	1 cut(s)	832
SfaNI	GCATC	5 cut(s)	101, 209, 226, 739, 944
SfcI	CTRYAG	2 cut(s)	618, 690
Sfr274I	CTCGAG	1 cut(s)	251
SlaI	CTCGAG	1 cut(s)	251
SmlI	CTYRAG	2 cut(s)	251, 319
SmoI	CTYRAG	2 cut(s)	251, 319
SnaBI	TACGTA	1 cut(s)	1110
Sse9I	AATT	6 cut(s)	129, 182, 411, 918, 1024, 1044
SseBI	AGGCCT	1 cut(s)	55
SspMI	CTAG	7 cut(s)	51, 168, 209, 380, 596, 800, 1019
StuI	AGGCCT	1 cut(s)	55
StyD4I	CCNGG	1 cut(s)	830
StyI	CCWWGG	2 cut(s)	50, 454
TaaI	ACNGT	4 cut(s)	429, 571, 980, 1093
TaiI	ACGT	2 cut(s)	743, 1112
TaqI	TCGA	6 cut(s)	104, 190, 217, 252, 308, 648
TasI	AATT	6 cut(s)	129, 182, 411, 918, 1024, 1044
TatI	WGTACW	1 cut(s)	723
TauI	GCSGC	4 cut(s)	242, 539, 848, 932
TfiI	GAWTC	3 cut(s)	13, 197, 331
TscAI	CASTG	1 cut(s)	391
TseFI	GTSAC	6 cut(s)	421, 429, 436, 896, 974, 1087
TseI	GCWGC	9 cut(s)	205, 401, 548, 563, 704, 842, 932, 983, 1082
Tsp45I	GTSAC	6 cut(s)	421, 429, 436, 896, 974, 1087
TspDTI	ATGAA	3 cut(s)	210, 520, 666
TspRI	CASTG	1 cut(s)	391
Tth111I	GACNNNGTC	1 cut(s)	427
XapI	RAATTY	1 cut(s)	1024
XbaI	TCTAGA	1 cut(s)	167
XhoI	CTCGAG	1 cut(s)	251
XmaJI	CCTAGG	1 cut(s)	50
XmnI	GAANNNNTTC	1 cut(s)	657
XspI	CTAG	7 cut(s)	51, 168, 209, 380, 596, 800, 1019

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.