Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0008777

Physical Location & Seq

Genomic Coordinates Forward (+)

11823204 .. 11828407

Gene Structure 5204 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG157800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGAGAAGCCTAACGCTCTCAGAGAGCGTTCTGGGTGGTGCACATTCACCGTTTCCCAAACCACCCAATAAGCCATTATGTTCTTCTTGCTATTTGCAGTCTTTCAAATTGCGCTCTAAGAATCCCTCCCTTCAAAACCCAAGTGTTGTTTCATCCAGGTATTCAAGTATGTGGCTTGCAAACAAATGTGACGAATGGTTCGGTGGCCTTTTACAAACTTCTGATAATTTAGATGGCCTTGAGCTCCGCGACCTTAATTACAAGAGGTGCAGGGTGATCAGAGAACCAATTGATACCATGGATGGTTCTGTTGCTTTAGATAAAGCACCTGTGTCCACTCATTTTTGGAAAGCTATGCTGCTGTTTGGATTTCTTACACTTCAAGGCTCTGAGCCGGCACTTGCTCTTCCTGATCTTGCTAGTGCATTGCAGTCAGTTCCTTTTCTGGGGGACCTTGGTGATATTAGCACAGGTTTTGCTTCAGCCTTCTTGCTGATTTTTTTCTCAGAACTAGGGGACAAGACCTTCTTTATCGCGGCACTTTTAGCAGCTAGGAATTCTGCTGCTGTTGTTTTTGCTGGAACCTTCAGTGCACTTGCGGCAATGACCGTCATATCTGTTGGTCTTGGGCGAACTTTTCACTACATCGATGAAATCCTACCATTCAGGTTTGGCGAGACTGATTTACCCATTGATGATATTGCTGCAGTTTTACTTTTGGTTTATTTTGGGGTTTCAACCTTGCGAGATGCCACCTCAAGTGATGGTTTGAAAGCAGAAGATGAACAGAGGGAGGCAGAGCTAGCCGTTTCAGAGTTTACAGGAAATGGTGCTGGAATACTAGCTGCTGCTAGCACAGTCATTAGCACTTTCGCTTTAGTTTTTGTTGCTGAATGGGGAGACAAATCATTTTTTTCTACAATAGCACTTGCTGCTGCCTCTTCACCCCTTGGAGTCATTGGAGGAGCACTAGCTGGTCACGGTGTTGCAACGTTGCTTGCTGTACTGGGAGGTTCTATACTGGGCACATTCTTATCAGAGAAGACTATTGCCTACGTCGGGGGTGTTCTTTTTCTTGTCTTTGCTGCTGTAACAGTGGCAGAGATAGTAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005384 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006828 GO:0008150 GO:0008152 GO:0008324 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0010207 GO:0010270 GO:0015075 GO:0015095 GO:0015318 GO:0015693 GO:0015979 GO:0016020 GO:0016043 GO:0019684 GO:0022607 GO:0022857 GO:0022890 GO:0030001 GO:0031976 GO:0031984 GO:0034220 GO:0034357 GO:0034622 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0046915 GO:0051179 GO:0051234 GO:0055035 GO:0055085 GO:0065003 GO:0070838 GO:0071421 GO:0071840 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1903830

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UPF0016

Protein Analysis

371

Amino Acids

39.16

Weight (kDa)

4.84

Isoelectric Point (pI)

41.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GDT1	PF01169	161 - 218	1.9e-17	Divalent cation/proton antiporter GDT1
GDT1	PF01169	289 - 362	3.8e-22	Divalent cation/proton antiporter GDT1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008777)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64150
fragaria_vesca	FvH4_5g03670 FvH4_5g03670 FvH4_5g03670 FvH4_5g03670 FvH4_5g03670
malus_domestica	MD06G1096200.v1.1
prunus_persica	Prupe.5G110800_v2.0.a1 Prupe.5G110800_v2.0.a1
pyrus_communis	pycom06g09250
rosa_chinensis	RchiOBHm_Chr7g0196061
rosa_laevigata	RLG00000004069
rosa_multiflora	Rmu_sc0001640.1_g000008
rosa_roxburghii	Rroxscaffold_3G00259890
rosa_rugosa	Rorug07G0029500 Rorug07G0029600 Rorug07G0029700 Rorug07G0029700
rosa_samantha	Rh7AG156100 Rh7BG157800 Rh7CG161500 Rh7DG157000
rosa_wichuraiana	Rw7G013340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	249, 536
AciI	CCGC	3 cut(s)	247, 536, 599
AclI	AACGTT	1 cut(s)	992
AcsI	RAATTY	1 cut(s)	556
AcuI	CTGAAG	2 cut(s)	465, 571
AfaI	GTAC	1 cut(s)	1005
AfiI	CCNNNNNNNGG	2 cut(s)	446, 1059
AgsI	TTSAA	6 cut(s)	106, 134, 165, 383, 738, 772
AjnI	CCWGG	1 cut(s)	155
AjuI	GAANNNNNNNTTGG	2 cut(s)	133, 165
AluBI	AGCT	6 cut(s)	244, 353, 551, 802, 845, 974
AluI	AGCT	6 cut(s)	244, 353, 551, 802, 845, 974
Alw21I	GWGCWC	4 cut(s)	43, 246, 595, 970
Alw26I	GTCTC	2 cut(s)	671, 894
Alw44I	GTGCAC	2 cut(s)	39, 591
AoxI	GGCC	2 cut(s)	205, 235
ApaLI	GTGCAC	2 cut(s)	39, 591
ApeKI	GCWGC	9 cut(s)	358, 548, 563, 704, 845, 848, 932, 935, 1085
ApoI	RAATTY	1 cut(s)	556
ArsI	GACNNNNNNTTYG	2 cut(s)	182, 214
AspLEI	GCGC	1 cut(s)	114
AspS9I	GGNCC	1 cut(s)	451
AsuHPI	GGTGA	4 cut(s)	39, 286, 470, 936
AsuNHI	GCTAGC	2 cut(s)	802, 851
AvaII	GGWCC	1 cut(s)	451
BaeGI	GKGCMC	3 cut(s)	43, 595, 1028
BanII	GRGCYC	1 cut(s)	246
BbsI	GAAGAC	1 cut(s)	1049
Bbv12I	GWGCWC	4 cut(s)	43, 246, 595, 970
BbvI	GCAGC	9 cut(s)	345, 550, 560, 691, 832, 835, 919, 922, 1072
BccI	CCATC	3 cut(s)	227, 296, 758
BceAI	ACGGC	1 cut(s)	791
BciT130I	CCWGG	1 cut(s)	157
BclI	TGATCA	1 cut(s)	276
BcoDI	GTCTC	2 cut(s)	671, 894
BfaI	CTAG	7 cut(s)	420, 512, 552, 803, 842, 852, 971
BfmI	CTRYAG	1 cut(s)	705
Bme1390I	CCNGG	1 cut(s)	157
Bme18I	GGWCC	1 cut(s)	451
BmgT120I	GGNCC	1 cut(s)	451
BmiI	GGNNCC	2 cut(s)	452, 583
BmrFI	CCNGG	1 cut(s)	157
BmrI	ACTGGG	2 cut(s)	1016, 1031
BmsI	GCATC	1 cut(s)	739
BmtI	GCTAGC	2 cut(s)	806, 855
BmuI	ACTGGG	2 cut(s)	1016, 1031
BpiI	GAAGAC	1 cut(s)	1049
BpuEI	CTTGAG	2 cut(s)	260, 742
Bsa29I	ATCGAT	1 cut(s)	648
BsaJI	CCNNGG	3 cut(s)	297, 454, 949
Bsc4I	CCNNNNNNNGG	2 cut(s)	446, 1059
Bse118I	RCCGGY	1 cut(s)	394
Bse1I	ACTGG	2 cut(s)	1011, 1026
Bse3DI	GCAATG	2 cut(s)	425, 609
BseBI	CCWGG	1 cut(s)	157
BseCI	ATCGAT	1 cut(s)	648
BseDI	CCNNGG	3 cut(s)	297, 454, 949
BseGI	GGATG	2 cut(s)	152, 307
BseLI	CCNNNNNNNGG	2 cut(s)	446, 1059
BseMI	GCAATG	2 cut(s)	425, 609
BseMII	CTCAG	3 cut(s)	33, 381, 519
BseNI	ACTGG	2 cut(s)	1011, 1026
BseRI	GAGGAG	1 cut(s)	978
BseSI	GKGCMC	3 cut(s)	43, 595, 1028
BseXI	GCAGC	9 cut(s)	345, 550, 560, 691, 832, 835, 919, 922, 1072
BsgI	GTGCAG	1 cut(s)	289
Bsh1236I	CGCG	2 cut(s)	249, 536
BshFI	GGCC	2 cut(s)	207, 237
BshVI	ATCGAT	1 cut(s)	648
BsiHKAI	GWGCWC	4 cut(s)	43, 246, 595, 970
BsiSI	CCGG	1 cut(s)	395
BslFI	GGGAC	2 cut(s)	464, 530
BslI	CCNNNNNNNGG	2 cut(s)	446, 1059
BsmAI	GTCTC	2 cut(s)	671, 894
BsmFI	GGGAC	2 cut(s)	464, 530
BsnI	GGCC	2 cut(s)	207, 237
Bsp1286I	GDGCHC	5 cut(s)	43, 246, 595, 970, 1028
Bsp143I	GATC	2 cut(s)	276, 412
Bsp19I	CCATGG	1 cut(s)	297
BspACI	CCGC	3 cut(s)	247, 536, 599
BspANI	GGCC	2 cut(s)	207, 237
BspCNI	CTCAG	3 cut(s)	32, 382, 518
BspDI	ATCGAT	1 cut(s)	648
BspFNI	CGCG	2 cut(s)	249, 536
BspLI	GGNNCC	2 cut(s)	452, 583
BspMAI	CTGCAG	1 cut(s)	709
BspOI	GCTAGC	2 cut(s)	806, 855
BspQI	GCTCTTC	1 cut(s)	411
BsrDI	GCAATG	2 cut(s)	425, 609
BsrFI	RCCGGY	1 cut(s)	394
BsrI	ACTGG	2 cut(s)	1011, 1026
BssAI	RCCGGY	1 cut(s)	394
BssECI	CCNNGG	3 cut(s)	297, 454, 949
BssMI	GATC	2 cut(s)	276, 412
BssT1I	CCWWGG	3 cut(s)	297, 454, 949
Bst2UI	CCWGG	1 cut(s)	157
Bst4CI	ACNGT	5 cut(s)	51, 610, 859, 983, 1096
Bst6I	CTCTTC	2 cut(s)	411, 946
BstAPI	GCANNNNNTGC	1 cut(s)	932
BstC8I	GCNNGC	5 cut(s)	177, 396, 804, 853, 999
BstDEI	CTNAG	4 cut(s)	19, 117, 390, 505
BstDSI	CCRYGG	1 cut(s)	297
BstF5I	GGATG	2 cut(s)	152, 307
BstFNI	CGCG	2 cut(s)	249, 536
BstHHI	GCGC	1 cut(s)	114
BstKTI	GATC	2 cut(s)	279, 415
BstMAI	GTCTC	2 cut(s)	671, 894
BstMBI	GATC	2 cut(s)	276, 412
BstMWI	GCNNNNNNNGC	4 cut(s)	545, 599, 803, 932
BstNI	CCWGG	1 cut(s)	157
BstSCI	CCNGG	1 cut(s)	155
BstSFI	CTRYAG	1 cut(s)	705
BstSLI	GKGCMC	3 cut(s)	43, 595, 1028
BstUI	CGCG	2 cut(s)	249, 536
BstV1I	GCAGC	9 cut(s)	345, 550, 560, 691, 832, 835, 919, 922, 1072
BstV2I	GAAGAC	1 cut(s)	1049
Bsu15I	ATCGAT	1 cut(s)	648
BsuRI	GGCC	2 cut(s)	207, 237
BsuTUI	ATCGAT	1 cut(s)	648
BtgI	CCRYGG	1 cut(s)	297
BtsCI	GGATG	2 cut(s)	152, 307
BtsIMutI	CAGTG	2 cut(s)	595, 1101
Cac8I	GCNNGC	5 cut(s)	177, 396, 804, 853, 999
CfoI	GCGC	1 cut(s)	114
Cfr10I	RCCGGY	1 cut(s)	394
Cfr13I	GGNCC	1 cut(s)	451
ClaI	ATCGAT	1 cut(s)	648
Csp6I	GTAC	1 cut(s)	1004
CviAII	CATG	1 cut(s)	298
CviQI	GTAC	1 cut(s)	1004
DdeI	CTNAG	4 cut(s)	19, 117, 390, 505
DpnI	GATC	2 cut(s)	278, 414
DpnII	GATC	2 cut(s)	276, 412
Eam1104I	CTCTTC	2 cut(s)	411, 946
EarI	CTCTTC	2 cut(s)	411, 946
Ecl136II	GAGCTC	1 cut(s)	244
Eco130I	CCWWGG	3 cut(s)	297, 454, 949
Eco24I	GRGCYC	1 cut(s)	246
Eco47I	GGWCC	1 cut(s)	451
Eco53kI	GAGCTC	1 cut(s)	244
Eco57I	CTGAAG	2 cut(s)	465, 571
EcoICRI	GAGCTC	1 cut(s)	244
EcoO109I	RGGNCCY	1 cut(s)	451
EcoRI	GAATTC	1 cut(s)	556
EcoRII	CCWGG	1 cut(s)	155
EcoT14I	CCWWGG	3 cut(s)	297, 454, 949
EcoT38I	GRGCYC	1 cut(s)	246
ErhI	CCWWGG	3 cut(s)	297, 454, 949
FaeI	CATG	1 cut(s)	301
FaiI	YATR	6 cut(s)	79, 170, 299, 356, 614, 1019
FalI	AAGNNNNNCTT	2 cut(s)	512, 544
FaqI	GGGAC	2 cut(s)	464, 530
FatI	CATG	1 cut(s)	297
FbaI	TGATCA	1 cut(s)	276
FokI	GGATG	2 cut(s)	139, 314
FriOI	GRGCYC	1 cut(s)	246
FspBI	CTAG	7 cut(s)	420, 512, 552, 803, 842, 852, 971
GlaI	GCGC	1 cut(s)	113
HaeIII	GGCC	2 cut(s)	207, 237
HapII	CCGG	1 cut(s)	395
HhaI	GCGC	1 cut(s)	114
Hin1II	CATG	1 cut(s)	301
Hin6I	GCGC	1 cut(s)	112
HinP1I	GCGC	1 cut(s)	112
HinfI	GANTC	2 cut(s)	121, 954
HpaII	CCGG	1 cut(s)	395
HphI	GGTGA	4 cut(s)	39, 286, 470, 936
Hpy166II	GTNNAC	4 cut(s)	41, 336, 593, 819
Hpy188I	TCNGA	7 cut(s)	22, 223, 281, 391, 508, 814, 1039
Hpy188III	TCNNGA	1 cut(s)	410
Hpy8I	GTNNAC	4 cut(s)	41, 336, 593, 819
Hpy99I	CGWCG	1 cut(s)	1061
HpyAV	CCTTC	4 cut(s)	140, 496, 535, 595
HpyCH4III	ACNGT	5 cut(s)	51, 610, 859, 983, 1096
HpyCH4IV	ACGT	2 cut(s)	992, 1056
HpyCH4V	TGCA	9 cut(s)	41, 97, 179, 270, 425, 430, 593, 707, 989
HpyF10VI	GCNNNNNNNGC	4 cut(s)	545, 599, 803, 932
HpyF3I	CTNAG	4 cut(s)	19, 117, 390, 505
HpySE526I	ACGT	2 cut(s)	992, 1056
Hsp92II	CATG	1 cut(s)	301
HspAI	GCGC	1 cut(s)	112
KroI	GCCGGC	1 cut(s)	394
KroNI	GCCGGC	1 cut(s)	396
Ksp22I	TGATCA	1 cut(s)	276
Kzo9I	GATC	2 cut(s)	276, 412
LguI	GCTCTTC	1 cut(s)	411
LmnI	GCTCC	2 cut(s)	249, 965
Lsp1109I	GCAGC	9 cut(s)	345, 550, 560, 691, 832, 835, 919, 922, 1072
LweI	GCATC	1 cut(s)	739
MaeI	CTAG	7 cut(s)	420, 512, 552, 803, 842, 852, 971
MaeII	ACGT	2 cut(s)	992, 1056
MaeIII	GTNAC	3 cut(s)	188, 977, 1090
MalI	GATC	2 cut(s)	278, 414
MboI	GATC	2 cut(s)	276, 412
MboII	GAAGA	5 cut(s)	75, 398, 791, 933, 1054
MfeI	CAATTG	1 cut(s)	288
MhlI	GDGCHC	5 cut(s)	43, 246, 595, 970, 1028
MluCI	AATT	5 cut(s)	107, 226, 256, 288, 556
MlyI	GAGTC	1 cut(s)	963
MnlI	CCTC	8 cut(s)	136, 258, 766, 783, 787, 949, 956, 1004
MroNI	GCCGGC	1 cut(s)	394
MseI	TTAA	1 cut(s)	255
MspI	CCGG	1 cut(s)	395
MspR9I	CCNGG	1 cut(s)	157
MunI	CAATTG	1 cut(s)	288
MvaI	CCWGG	1 cut(s)	157
MvnI	CGCG	2 cut(s)	249, 536
MwoI	GCNNNNNNNGC	4 cut(s)	545, 599, 803, 932
NaeI	GCCGGC	1 cut(s)	396
NcoI	CCATGG	1 cut(s)	297
NdeII	GATC	2 cut(s)	276, 412
NgoMIV	GCCGGC	1 cut(s)	394
NheI	GCTAGC	2 cut(s)	802, 851
NlaIII	CATG	1 cut(s)	301
NlaIV	GGNNCC	2 cut(s)	452, 583
NmuCI	GTSAC	2 cut(s)	188, 977
PciSI	GCTCTTC	1 cut(s)	411
PdiI	GCCGGC	1 cut(s)	396
PfeI	GAWTC	1 cut(s)	121
PleI	GAGTC	1 cut(s)	962
PpsI	GAGTC	1 cut(s)	962
PpuMI	RGGWCCY	1 cut(s)	451
Psp124BI	GAGCTC	1 cut(s)	246
Psp1406I	AACGTT	1 cut(s)	992
Psp5II	RGGWCCY	1 cut(s)	451
Psp6I	CCWGG	1 cut(s)	155
PspGI	CCWGG	1 cut(s)	155
PspN4I	GGNNCC	2 cut(s)	452, 583
PspPI	GGNCC	1 cut(s)	451
PspPPI	RGGWCCY	1 cut(s)	451
PstI	CTGCAG	1 cut(s)	709
RsaI	GTAC	1 cut(s)	1005
RsaNI	GTAC	1 cut(s)	1004
SacI	GAGCTC	1 cut(s)	246
SapI	GCTCTTC	1 cut(s)	411
SaqAI	TTAA	1 cut(s)	255
Sau3AI	GATC	2 cut(s)	276, 412
Sau96I	GGNCC	1 cut(s)	451
SchI	GAGTC	1 cut(s)	963
ScrFI	CCNGG	1 cut(s)	157
SduI	GDGCHC	5 cut(s)	43, 246, 595, 970, 1028
SfaNI	GCATC	1 cut(s)	739
SfcI	CTRYAG	1 cut(s)	705
SinI	GGWCC	1 cut(s)	451
SmlI	CTYRAG	2 cut(s)	239, 757
SmoI	CTYRAG	2 cut(s)	239, 757
Sse9I	AATT	5 cut(s)	107, 226, 256, 288, 556
SsiI	CCGC	3 cut(s)	247, 536, 599
SspMI	CTAG	7 cut(s)	420, 512, 552, 803, 842, 852, 971
SstI	GAGCTC	1 cut(s)	246
StyD4I	CCNGG	1 cut(s)	155
StyI	CCWWGG	3 cut(s)	297, 454, 949
TaaI	ACNGT	5 cut(s)	51, 610, 859, 983, 1096
TaiI	ACGT	2 cut(s)	995, 1059
TaqI	TCGA	1 cut(s)	648
TasI	AATT	5 cut(s)	107, 226, 256, 288, 556
TatI	WGTACW	1 cut(s)	1003
TauI	GCSGC	2 cut(s)	539, 602
TfiI	GAWTC	1 cut(s)	121
Tru1I	TTAA	1 cut(s)	255
Tru9I	TTAA	1 cut(s)	255
TscAI	CASTG	2 cut(s)	595, 1101
TseFI	GTSAC	2 cut(s)	188, 977
TseI	GCWGC	9 cut(s)	358, 548, 563, 704, 845, 848, 932, 935, 1085
Tsp45I	GTSAC	2 cut(s)	188, 977
TspDTI	ATGAA	3 cut(s)	141, 666, 798
TspRI	CASTG	2 cut(s)	595, 1101
VneI	GTGCAC	2 cut(s)	39, 591
VpaK11BI	GGWCC	1 cut(s)	451
XapI	RAATTY	1 cut(s)	556
XspI	CTAG	7 cut(s)	420, 512, 552, 803, 842, 852, 971

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.