Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0008777

Physical Location & Seq

Genomic Coordinates Reverse (-)

54261926 .. 54267683

Gene Structure 5758 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00259890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGAGAAGCCTAACGCTCTCAGAGAGCGTTTTGGGTGCACACTCACCGTTTCCCAAACCACCCAATAAGCCATTATGTTCTTCTTGCTATTTGCAGTCTTTCAAATTGCGCTCTAAGAATCCTCTCTTCAAAATCCTAGTGTTGTTTCATCCAGGAAATGCTGATGTGCTAGCCAAGTATTCAAGTATGTGGCTTGCAAACAAATGTGACGAATGGTTCGGTGGCCTTTTACAAACTTCTGATAATTTAGATGGCCTTGAGTTCCGCGACCTTAATTACAAGAGGTGCAGGGTGATCAGAGAACCAATTGATACCATGGATGGTTCTGTTGCTCTAGATAAAGCACCTGTGTCCACTCATTTTTGGAAAGCTATGCTGCTGTTTGGATTTCTTACACTTCAAGGCTCTGAGCCGGCACTTGCTCTTCCTGATCTTGCTAGTGCATTGCAGTCAGTTCCGTTTCTGGGGGACCTTGGCGATATTAGCACAGGTTTTGCTTCAGCCTTCTTGCTGATTTTTTTCTCAGAACTAGGGGACAAGACCTTCTTTATTGCGGCACTTTTAGCAGCTAGGAATTCTGCTGCTGTTGTTTTTGCTGGAACCTTCAGTGCACTTGCGGCAATGACCGTCATATCTGTTGGTCTTGGGCGAACTTTTCACTACATCGATGAAATCCTACCATTCAGGTTTGGCGAGACTGATTTACCCATTGATGATATTGCTGCAGTTTTACTTTTGGTTTATTTTGGGGTTTCAACCTTGCGAGATGCCACCTCAAGTGATGGTTTGAAAGCAGAAGATGAACAGAGGGAGGCAGAGCTAGCCGTTTCAGAGTTTACAGGAAATGGTGCTGGAATACTAGCAGCTGCTAGCACAGTCATTAGCACTTTCGCTTTAGTTTTTGTTGCTGAATGGGGAGACAAATCATTTTTTTCTACAATAGCACTTGCTGCTGCCTCTTCACCCCTTGGAGTCATTGGAGGAGCACTAGCTGGTCACGGTGTTGCAACGTTGGCAAGTTTCTTTCGTTGTTCTATACTGGGCACATTCTTATCAGAGAAGACTATTGCCTACGTCGGGGGTGTTCTTTTTCTTGTCTTTGCTGCTGTAACAGTGGCAGAGATAGTAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005384 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006828 GO:0008150 GO:0008152 GO:0008324 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0010207 GO:0010270 GO:0015075 GO:0015095 GO:0015318 GO:0015693 GO:0015979 GO:0016020 GO:0016043 GO:0019684 GO:0022607 GO:0022857 GO:0022890 GO:0030001 GO:0031976 GO:0031984 GO:0034220 GO:0034357 GO:0034622 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0046915 GO:0051179 GO:0051234 GO:0055035 GO:0055085 GO:0065003 GO:0070838 GO:0071421 GO:0071840 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1903830

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UPF0016

Protein Analysis

377

Amino Acids

40.16

Weight (kDa)

5.01

Isoelectric Point (pI)

36.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GDT1	PF01169	167 - 224	1.9e-17	Divalent cation/proton antiporter GDT1
GDT1	PF01169	295 - 368	1.2e-18	Divalent cation/proton antiporter GDT1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008777)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64150
fragaria_vesca	FvH4_5g03670 FvH4_5g03670 FvH4_5g03670 FvH4_5g03670 FvH4_5g03670
malus_domestica	MD06G1096200.v1.1
prunus_persica	Prupe.5G110800_v2.0.a1 Prupe.5G110800_v2.0.a1
pyrus_communis	pycom06g09250
rosa_chinensis	RchiOBHm_Chr7g0196061
rosa_laevigata	RLG00000004069
rosa_multiflora	Rmu_sc0001640.1_g000008
rosa_roxburghii	Rroxscaffold_3G00259890
rosa_rugosa	Rorug07G0029500 Rorug07G0029600 Rorug07G0029700 Rorug07G0029700
rosa_samantha	Rh7AG156100 Rh7BG157800 Rh7CG161500 Rh7DG157000
rosa_wichuraiana	Rw7G013340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	267
AciI	CCGC	3 cut(s)	265, 554, 617
AclI	AACGTT	1 cut(s)	1010
AcsI	RAATTY	1 cut(s)	574
AcuI	CTGAAG	2 cut(s)	483, 589
AfiI	CCNNNNNNNGG	2 cut(s)	464, 1077
AgsI	TTSAA	6 cut(s)	103, 130, 183, 401, 756, 790
AjnI	CCWGG	1 cut(s)	151
AluBI	AGCT	5 cut(s)	371, 569, 820, 866, 992
AluI	AGCT	5 cut(s)	371, 569, 820, 866, 992
Alw21I	GWGCWC	3 cut(s)	40, 613, 988
Alw26I	GTCTC	2 cut(s)	689, 912
Alw44I	GTGCAC	2 cut(s)	36, 609
AoxI	GGCC	2 cut(s)	223, 253
ApaLI	GTGCAC	2 cut(s)	36, 609
ApeKI	GCWGC	9 cut(s)	376, 566, 581, 722, 863, 866, 950, 953, 1103
ApoI	RAATTY	1 cut(s)	574
ArsI	GACNNNNNNTTYG	2 cut(s)	200, 232
AspLEI	GCGC	1 cut(s)	111
AspS9I	GGNCC	1 cut(s)	469
AsuHPI	GGTGA	3 cut(s)	36, 304, 954
AsuNHI	GCTAGC	3 cut(s)	169, 820, 869
AvaII	GGWCC	1 cut(s)	469
BaeGI	GKGCMC	3 cut(s)	40, 613, 1046
BbsI	GAAGAC	1 cut(s)	1067
Bbv12I	GWGCWC	3 cut(s)	40, 613, 988
BbvI	GCAGC	9 cut(s)	363, 568, 578, 709, 853, 875, 937, 940, 1090
BccI	CCATC	3 cut(s)	245, 314, 776
BceAI	ACGGC	1 cut(s)	809
BciT130I	CCWGG	1 cut(s)	153
BclI	TGATCA	1 cut(s)	294
BcoDI	GTCTC	2 cut(s)	689, 912
BfmI	CTRYAG	1 cut(s)	723
Bme1390I	CCNGG	1 cut(s)	153
Bme18I	GGWCC	1 cut(s)	469
BmgT120I	GGNCC	1 cut(s)	469
BmiI	GGNNCC	2 cut(s)	470, 601
BmrFI	CCNGG	1 cut(s)	153
BmrI	ACTGGG	1 cut(s)	1049
BmsI	GCATC	1 cut(s)	757
BmtI	GCTAGC	3 cut(s)	173, 824, 873
BmuI	ACTGGG	1 cut(s)	1049
BpiI	GAAGAC	1 cut(s)	1067
BpuEI	CTTGAG	2 cut(s)	278, 760
Bsa29I	ATCGAT	1 cut(s)	666
BsaJI	CCNNGG	3 cut(s)	315, 472, 967
Bsc4I	CCNNNNNNNGG	2 cut(s)	464, 1077
Bse118I	RCCGGY	1 cut(s)	412
Bse1I	ACTGG	1 cut(s)	1044
Bse3DI	GCAATG	2 cut(s)	443, 627
BseBI	CCWGG	1 cut(s)	153
BseCI	ATCGAT	1 cut(s)	666
BseDI	CCNNGG	3 cut(s)	315, 472, 967
BseGI	GGATG	2 cut(s)	148, 325
BseLI	CCNNNNNNNGG	2 cut(s)	464, 1077
BseMI	GCAATG	2 cut(s)	443, 627
BseMII	CTCAG	3 cut(s)	33, 399, 537
BseNI	ACTGG	1 cut(s)	1044
BseRI	GAGGAG	1 cut(s)	996
BseSI	GKGCMC	3 cut(s)	40, 613, 1046
BseXI	GCAGC	9 cut(s)	363, 568, 578, 709, 853, 875, 937, 940, 1090
BsgI	GTGCAG	1 cut(s)	307
Bsh1236I	CGCG	1 cut(s)	267
BshFI	GGCC	2 cut(s)	225, 255
BshVI	ATCGAT	1 cut(s)	666
BsiHKAI	GWGCWC	3 cut(s)	40, 613, 988
BsiSI	CCGG	1 cut(s)	413
BslFI	GGGAC	2 cut(s)	482, 548
BslI	CCNNNNNNNGG	2 cut(s)	464, 1077
BsmAI	GTCTC	2 cut(s)	689, 912
BsmFI	GGGAC	2 cut(s)	482, 548
BsnI	GGCC	2 cut(s)	225, 255
Bsp1286I	GDGCHC	4 cut(s)	40, 613, 988, 1046
Bsp143I	GATC	2 cut(s)	294, 430
Bsp19I	CCATGG	1 cut(s)	315
BspACI	CCGC	3 cut(s)	265, 554, 617
BspANI	GGCC	2 cut(s)	225, 255
BspCNI	CTCAG	3 cut(s)	32, 400, 536
BspDI	ATCGAT	1 cut(s)	666
BspFNI	CGCG	1 cut(s)	267
BspLI	GGNNCC	2 cut(s)	470, 601
BspMAI	CTGCAG	1 cut(s)	727
BspOI	GCTAGC	3 cut(s)	173, 824, 873
BspQI	GCTCTTC	1 cut(s)	429
BsrDI	GCAATG	2 cut(s)	443, 627
BsrFI	RCCGGY	1 cut(s)	412
BsrI	ACTGG	1 cut(s)	1044
BssAI	RCCGGY	1 cut(s)	412
BssECI	CCNNGG	3 cut(s)	315, 472, 967
BssMI	GATC	2 cut(s)	294, 430
BssT1I	CCWWGG	3 cut(s)	315, 472, 967
Bst2UI	CCWGG	1 cut(s)	153
Bst4CI	ACNGT	5 cut(s)	48, 628, 877, 1001, 1114
Bst6I	CTCTTC	3 cut(s)	131, 429, 964
BstAPI	GCANNNNNTGC	1 cut(s)	950
BstC8I	GCNNGC	5 cut(s)	171, 195, 414, 822, 871
BstDEI	CTNAG	4 cut(s)	19, 114, 408, 523
BstDSI	CCRYGG	1 cut(s)	315
BstF5I	GGATG	2 cut(s)	148, 325
BstFNI	CGCG	1 cut(s)	267
BstHHI	GCGC	1 cut(s)	111
BstKTI	GATC	2 cut(s)	297, 433
BstMAI	GTCTC	2 cut(s)	689, 912
BstMBI	GATC	2 cut(s)	294, 430
BstMWI	GCNNNNNNNGC	6 cut(s)	483, 563, 617, 821, 950, 1013
BstNI	CCWGG	1 cut(s)	153
BstSCI	CCNGG	1 cut(s)	151
BstSFI	CTRYAG	1 cut(s)	723
BstSLI	GKGCMC	3 cut(s)	40, 613, 1046
BstUI	CGCG	1 cut(s)	267
BstV1I	GCAGC	9 cut(s)	363, 568, 578, 709, 853, 875, 937, 940, 1090
BstV2I	GAAGAC	1 cut(s)	1067
Bsu15I	ATCGAT	1 cut(s)	666
BsuRI	GGCC	2 cut(s)	225, 255
BsuTUI	ATCGAT	1 cut(s)	666
BtgI	CCRYGG	1 cut(s)	315
BtsCI	GGATG	2 cut(s)	148, 325
BtsIMutI	CAGTG	2 cut(s)	613, 1119
Cac8I	GCNNGC	5 cut(s)	171, 195, 414, 822, 871
CfoI	GCGC	1 cut(s)	111
Cfr10I	RCCGGY	1 cut(s)	412
Cfr13I	GGNCC	1 cut(s)	469
ClaI	ATCGAT	1 cut(s)	666
CviAII	CATG	1 cut(s)	316
DdeI	CTNAG	4 cut(s)	19, 114, 408, 523
DpnI	GATC	2 cut(s)	296, 432
DpnII	GATC	2 cut(s)	294, 430
Eam1104I	CTCTTC	3 cut(s)	131, 429, 964
EarI	CTCTTC	3 cut(s)	131, 429, 964
Eco130I	CCWWGG	3 cut(s)	315, 472, 967
Eco47I	GGWCC	1 cut(s)	469
Eco57I	CTGAAG	2 cut(s)	483, 589
EcoO109I	RGGNCCY	1 cut(s)	469
EcoRI	GAATTC	1 cut(s)	574
EcoRII	CCWGG	1 cut(s)	151
EcoT14I	CCWWGG	3 cut(s)	315, 472, 967
ErhI	CCWWGG	3 cut(s)	315, 472, 967
FaeI	CATG	1 cut(s)	319
FaiI	YATR	6 cut(s)	76, 188, 317, 374, 632, 1037
FalI	AAGNNNNNCTT	2 cut(s)	530, 562
FaqI	GGGAC	2 cut(s)	482, 548
FatI	CATG	1 cut(s)	315
FbaI	TGATCA	1 cut(s)	294
FokI	GGATG	2 cut(s)	135, 332
GlaI	GCGC	1 cut(s)	110
HaeIII	GGCC	2 cut(s)	225, 255
HapII	CCGG	1 cut(s)	413
HhaI	GCGC	1 cut(s)	111
Hin1II	CATG	1 cut(s)	319
Hin6I	GCGC	1 cut(s)	109
HinP1I	GCGC	1 cut(s)	109
HinfI	GANTC	2 cut(s)	118, 972
HpaII	CCGG	1 cut(s)	413
HphI	GGTGA	3 cut(s)	36, 304, 954
Hpy166II	GTNNAC	4 cut(s)	38, 354, 611, 837
Hpy188I	TCNGA	7 cut(s)	22, 241, 299, 409, 526, 832, 1057
Hpy188III	TCNNGA	2 cut(s)	335, 428
Hpy8I	GTNNAC	4 cut(s)	38, 354, 611, 837
Hpy99I	CGWCG	1 cut(s)	1079
HpyAV	CCTTC	3 cut(s)	514, 553, 613
HpyCH4III	ACNGT	5 cut(s)	48, 628, 877, 1001, 1114
HpyCH4IV	ACGT	2 cut(s)	1010, 1074
HpyCH4V	TGCA	9 cut(s)	38, 94, 197, 288, 443, 448, 611, 725, 1007
HpyF10VI	GCNNNNNNNGC	6 cut(s)	483, 563, 617, 821, 950, 1013
HpyF3I	CTNAG	4 cut(s)	19, 114, 408, 523
HpySE526I	ACGT	2 cut(s)	1010, 1074
Hsp92II	CATG	1 cut(s)	319
HspAI	GCGC	1 cut(s)	109
KroI	GCCGGC	1 cut(s)	412
KroNI	GCCGGC	1 cut(s)	414
Ksp22I	TGATCA	1 cut(s)	294
Kzo9I	GATC	2 cut(s)	294, 430
LguI	GCTCTTC	1 cut(s)	429
LmnI	GCTCC	1 cut(s)	983
Lsp1109I	GCAGC	9 cut(s)	363, 568, 578, 709, 853, 875, 937, 940, 1090
LweI	GCATC	1 cut(s)	757
MaeII	ACGT	2 cut(s)	1010, 1074
MaeIII	GTNAC	3 cut(s)	206, 995, 1108
MalI	GATC	2 cut(s)	296, 432
MboI	GATC	2 cut(s)	294, 430
MboII	GAAGA	6 cut(s)	72, 118, 416, 809, 951, 1072
MfeI	CAATTG	1 cut(s)	306
MhlI	GDGCHC	4 cut(s)	40, 613, 988, 1046
MluCI	AATT	5 cut(s)	104, 244, 274, 306, 574
MlyI	GAGTC	1 cut(s)	981
MnlI	CCTC	7 cut(s)	132, 276, 784, 801, 805, 967, 974
MroNI	GCCGGC	1 cut(s)	412
MseI	TTAA	1 cut(s)	273
MspA1I	CMGCKG	1 cut(s)	866
MspI	CCGG	1 cut(s)	413
MspR9I	CCNGG	1 cut(s)	153
MunI	CAATTG	1 cut(s)	306
MvaI	CCWGG	1 cut(s)	153
MvnI	CGCG	1 cut(s)	267
MwoI	GCNNNNNNNGC	6 cut(s)	483, 563, 617, 821, 950, 1013
NaeI	GCCGGC	1 cut(s)	414
NcoI	CCATGG	1 cut(s)	315
NdeII	GATC	2 cut(s)	294, 430
NgoMIV	GCCGGC	1 cut(s)	412
NheI	GCTAGC	3 cut(s)	169, 820, 869
NlaIII	CATG	1 cut(s)	319
NlaIV	GGNNCC	2 cut(s)	470, 601
NmuCI	GTSAC	2 cut(s)	206, 995
PciSI	GCTCTTC	1 cut(s)	429
PdiI	GCCGGC	1 cut(s)	414
PfeI	GAWTC	1 cut(s)	118
PfoI	TCCNGGA	1 cut(s)	151
PleI	GAGTC	1 cut(s)	980
PpsI	GAGTC	1 cut(s)	980
PpuMI	RGGWCCY	1 cut(s)	469
Psp1406I	AACGTT	1 cut(s)	1010
Psp5II	RGGWCCY	1 cut(s)	469
Psp6I	CCWGG	1 cut(s)	151
PspGI	CCWGG	1 cut(s)	151
PspN4I	GGNNCC	2 cut(s)	470, 601
PspPI	GGNCC	1 cut(s)	469
PspPPI	RGGWCCY	1 cut(s)	469
PstI	CTGCAG	1 cut(s)	727
PvuII	CAGCTG	1 cut(s)	866
SapI	GCTCTTC	1 cut(s)	429
SaqAI	TTAA	1 cut(s)	273
Sau3AI	GATC	2 cut(s)	294, 430
Sau96I	GGNCC	1 cut(s)	469
SchI	GAGTC	1 cut(s)	981
ScrFI	CCNGG	1 cut(s)	153
SduI	GDGCHC	4 cut(s)	40, 613, 988, 1046
SfaNI	GCATC	1 cut(s)	757
SfcI	CTRYAG	1 cut(s)	723
SinI	GGWCC	1 cut(s)	469
SmlI	CTYRAG	2 cut(s)	257, 775
SmoI	CTYRAG	2 cut(s)	257, 775
Sse9I	AATT	5 cut(s)	104, 244, 274, 306, 574
SsiI	CCGC	3 cut(s)	265, 554, 617
StyD4I	CCNGG	1 cut(s)	151
StyI	CCWWGG	3 cut(s)	315, 472, 967
TaaI	ACNGT	5 cut(s)	48, 628, 877, 1001, 1114
TaiI	ACGT	2 cut(s)	1013, 1077
TaqI	TCGA	1 cut(s)	666
TasI	AATT	5 cut(s)	104, 244, 274, 306, 574
TauI	GCSGC	2 cut(s)	557, 620
TfiI	GAWTC	1 cut(s)	118
Tru1I	TTAA	1 cut(s)	273
Tru9I	TTAA	1 cut(s)	273
TscAI	CASTG	2 cut(s)	613, 1119
TseFI	GTSAC	2 cut(s)	206, 995
TseI	GCWGC	9 cut(s)	376, 566, 581, 722, 863, 866, 950, 953, 1103
Tsp45I	GTSAC	2 cut(s)	206, 995
TspDTI	ATGAA	3 cut(s)	137, 684, 816
TspGWI	ACGGA	1 cut(s)	447
TspRI	CASTG	2 cut(s)	613, 1119
VneI	GTGCAC	2 cut(s)	36, 609
VpaK11BI	GGWCC	1 cut(s)	469
XapI	RAATTY	1 cut(s)	574
XbaI	TCTAGA	1 cut(s)	334

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.