Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0008777

Physical Location & Seq

Genomic Coordinates Reverse (-)

14470609 .. 14476259

Gene Structure 5651 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g09250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

ATGCGGAGTATAACTCTCTCGGACAGCTTTTTGGGGGTGCACTCGCCGCCTTCGCCATTTCTAAAGCCCCCCAAGCCGCCATTGTTATGTTCATCCTGTTACTTGCTTTCTTTCAAATTGCGCTCGAAGAAGCTCATTTCCAAGCTTTCTCTCCCAAACCCAACTCTCGTTTCCACCAGGTCTTCAAGAAAGTGGAATGCGGCAGACACCTCCGAGGAATGGATTGGACGTCTTTTACAAACTTCTGAAAATCCAGATGGCCTTGAGTTACAGTACCTTAATCACAAGAAATGTCGGGTGACCACAGAACAATTTCATGTTGTGGATGATTACGTGGCTTTAGATACAGTCCTTGCAAAGGAAAACTCAAAAGCGGATAGTCACATGGACAGAGAGATGCACATTTCTTATAATCGATTCTCTCATTTTTGGAAGGCTATCATGCTGTGTGGATTTCTTGCACTTCAAGGCTCTGAACCTGCTTTTGCTGTTTCTAATCTTGCAAGTGGGTTGCCCTCAATTCCTTTTCTGGGGAACCTTGGCGATCTTAGCACAGGTTTTGCTTCAGCATTTTTGCTGATCTTTTTCTCAGAACTAGGGGATAAGACCTTCTTTATTGCGGCACTTTTAGCAGCTAGGAATTCAGCTCCAGTTGTTTTTATTGGGACCTTTGGCGCACTTGCGGCAATGACCATCATATCTGTTGTTCTTGGACGAACTTTTCACTATGTCGATGAAATCCTACCATTCAGATTTGGCGAGACTGATCTACCCATTGATGATATTGCTGCAGTTTTGCTCTTGGTTTACTTTGGAGTTTCAACTTTGCGTGATGCCACCTCAAGTGATGGTATGAAAGCAGAAGATGAACAGAGGGAGGCAGAGCTAGCTGTTTCAGAGTTTTCAGGAAATGGTTCTGGAATACTAGCTGCTGCTAGCACCGCCGCTAGCACCTTCCTTCTAGTTTTTGTTGCTGAATGGGGAGACAAATCATTTTTCTCCACAATCGCACTTGCTGCAGCCTCTTCACCCCTTGGAGTCATCGGGGGAGCGCTAGCTGGTCACGGTGTTGCAACTTTGCTTGCTGTTTTGGGGGGTTCTTTACTGGGCACATTCTTATCAGAGAAGGCCATTGCGTACGTCGGAGGCGTTCTTTTTCTGGTGTTTGCAGCTGTAACACTGGTTGAGATTGTAAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005384 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006828 GO:0008150 GO:0008152 GO:0008324 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0010207 GO:0010270 GO:0015075 GO:0015095 GO:0015318 GO:0015693 GO:0015979 GO:0016020 GO:0016043 GO:0019684 GO:0022607 GO:0022857 GO:0022890 GO:0030001 GO:0031976 GO:0031984 GO:0034220 GO:0034357 GO:0034622 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0046915 GO:0051179 GO:0051234 GO:0055035 GO:0055085 GO:0065003 GO:0070838 GO:0071421 GO:0071840 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1903830

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UPF0016

Protein Analysis

400

Amino Acids

42.67

Weight (kDa)

5.52

Isoelectric Point (pI)

36.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GDT1	PF01169	189 - 245	3e-17	Divalent cation/proton antiporter GDT1
GDT1	PF01169	317 - 390	8.1e-22	Divalent cation/proton antiporter GDT1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008777)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64150
fragaria_vesca	FvH4_5g03670 FvH4_5g03670 FvH4_5g03670 FvH4_5g03670 FvH4_5g03670
malus_domestica	MD06G1096200.v1.1
prunus_persica	Prupe.5G110800_v2.0.a1 Prupe.5G110800_v2.0.a1
pyrus_communis	pycom06g09250
rosa_chinensis	RchiOBHm_Chr7g0196061
rosa_laevigata	RLG00000004069
rosa_multiflora	Rmu_sc0001640.1_g000008
rosa_roxburghii	Rroxscaffold_3G00259890
rosa_rugosa	Rorug07G0029500 Rorug07G0029600 Rorug07G0029700 Rorug07G0029700
rosa_samantha	Rh7AG156100 Rh7BG157800 Rh7CG161500 Rh7DG157000
rosa_wichuraiana	Rw7G013340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	411
AatII	GACGTC	1 cut(s)	232
Acc36I	ACCTGC	1 cut(s)	487
AciI	CCGC	9 cut(s)	4, 47, 77, 200, 374, 620, 683, 942, 945
AcsI	RAATTY	1 cut(s)	640
AcuI	CTGAAG	1 cut(s)	549
AcyI	GRCGYC	1 cut(s)	229
AfaI	GTAC	2 cut(s)	275, 1139
AfeI	AGCGCT	1 cut(s)	1053
AfiI	CCNNNNNNNGG	3 cut(s)	219, 358, 530
AgsI	TTSAA	4 cut(s)	115, 186, 467, 822
AjnI	CCWGG	1 cut(s)	176
AjuI	GAANNNNNNNTTGG	2 cut(s)	154, 186
Alw21I	GWGCWC	1 cut(s)	42
Alw26I	GTCTC	2 cut(s)	755, 978
Alw44I	GTGCAC	1 cut(s)	38
Aor51HI	AGCGCT	1 cut(s)	1053
AoxI	GGCC	2 cut(s)	259, 1128
ApaLI	GTGCAC	1 cut(s)	38
ApeKI	GCWGC	7 cut(s)	632, 788, 929, 932, 1016, 1019, 1169
ApoI	RAATTY	1 cut(s)	640
Asp700I	GAANNNNTTC	2 cut(s)	312, 913
AspLEI	GCGC	3 cut(s)	123, 677, 1054
AspS9I	GGNCC	1 cut(s)	666
AsuHPI	GGTGA	2 cut(s)	310, 1020
AsuNHI	GCTAGC	4 cut(s)	886, 935, 947, 1054
AvaII	GGWCC	1 cut(s)	666
BaeGI	GKGCMC	2 cut(s)	42, 1112
BbsI	GAAGAC	1 cut(s)	174
Bbv12I	GWGCWC	1 cut(s)	42
BbvI	GCAGC	7 cut(s)	644, 775, 916, 919, 1003, 1031, 1181
BccI	CCATC	3 cut(s)	251, 701, 842
BciT130I	CCWGG	1 cut(s)	178
BcoDI	GTCTC	2 cut(s)	755, 978
BfaI	CTAG	8 cut(s)	596, 636, 887, 926, 936, 948, 962, 1055
BfmI	CTRYAG	2 cut(s)	789, 1017
BfoI	RGCGCY	1 cut(s)	1055
BfuAI	ACCTGC	1 cut(s)	487
Bme1390I	CCNGG	1 cut(s)	178
Bme18I	GGWCC	1 cut(s)	666
BmgT120I	GGNCC	1 cut(s)	666
BmiI	GGNNCC	2 cut(s)	536, 667
BmrFI	CCNGG	1 cut(s)	178
BmrI	ACTGGG	1 cut(s)	1115
BmsI	GCATC	2 cut(s)	387, 823
BmtI	GCTAGC	4 cut(s)	890, 939, 951, 1058
BmuI	ACTGGG	1 cut(s)	1115
BpiI	GAAGAC	1 cut(s)	174
BplI	GAGNNNNNCTC	1 cut(s)	30
BpmI	CTGGAG	1 cut(s)	633
BpuEI	CTTGAG	2 cut(s)	284, 826
Bsa29I	ATCGAT	1 cut(s)	415
BsaAI	YACGTR	1 cut(s)	334
BsaHI	GRCGYC	1 cut(s)	229
BsaJI	CCNNGG	3 cut(s)	213, 538, 1033
Bsc4I	CCNNNNNNNGG	3 cut(s)	219, 358, 530
Bse1I	ACTGG	3 cut(s)	650, 1110, 1185
Bse3DI	GCAATG	2 cut(s)	693, 1131
BseBI	CCWGG	1 cut(s)	178
BseCI	ATCGAT	1 cut(s)	415
BseDI	CCNNGG	3 cut(s)	213, 538, 1033
BseGI	GGATG	2 cut(s)	92, 331
BseLI	CCNNNNNNNGG	3 cut(s)	219, 358, 530
BseMI	GCAATG	2 cut(s)	693, 1131
BseMII	CTCAG	1 cut(s)	603
BseNI	ACTGG	3 cut(s)	650, 1110, 1185
BseSI	GKGCMC	2 cut(s)	42, 1112
BseXI	GCAGC	7 cut(s)	644, 775, 916, 919, 1003, 1031, 1181
BshFI	GGCC	2 cut(s)	261, 1130
BshVI	ATCGAT	1 cut(s)	415
BsiHKAI	GWGCWC	1 cut(s)	42
BsiWI	CGTACG	1 cut(s)	1137
BslFI	GGGAC	1 cut(s)	679
BslI	CCNNNNNNNGG	3 cut(s)	219, 358, 530
BsmAI	GTCTC	2 cut(s)	755, 978
BsmFI	GGGAC	1 cut(s)	679
BsmI	GAATGC	1 cut(s)	202
BsnI	GGCC	2 cut(s)	261, 1130
Bsp1286I	GDGCHC	2 cut(s)	42, 1112
Bsp143I	GATC	3 cut(s)	544, 579, 766
BspACI	CCGC	9 cut(s)	4, 47, 77, 200, 374, 620, 683, 942, 945
BspANI	GGCC	2 cut(s)	261, 1130
BspCNI	CTCAG	1 cut(s)	602
BspDI	ATCGAT	1 cut(s)	415
BspLI	GGNNCC	2 cut(s)	536, 667
BspMAI	CTGCAG	2 cut(s)	793, 1021
BspMI	ACCTGC	1 cut(s)	487
BspOI	GCTAGC	4 cut(s)	890, 939, 951, 1058
BsrDI	GCAATG	2 cut(s)	693, 1131
BsrI	ACTGG	3 cut(s)	650, 1110, 1185
BssECI	CCNNGG	3 cut(s)	213, 538, 1033
BssMI	GATC	3 cut(s)	544, 579, 766
BssNI	GRCGYC	1 cut(s)	229
BssT1I	CCWWGG	2 cut(s)	538, 1033
Bst2UI	CCWGG	1 cut(s)	178
Bst4CI	ACNGT	3 cut(s)	273, 349, 1067
Bst6I	CTCTTC	1 cut(s)	1030
BstACI	GRCGYC	1 cut(s)	229
BstAPI	GCANNNNNTGC	1 cut(s)	1016
BstBAI	YACGTR	1 cut(s)	334
BstC8I	GCNNGC	5 cut(s)	888, 937, 949, 1056, 1083
BstDEI	CTNAG	2 cut(s)	548, 589
BstEII	GGTNACC	1 cut(s)	298
BstENI	CCTNNNNNAGG	1 cut(s)	356
BstF5I	GGATG	2 cut(s)	92, 331
BstH2I	RGCGCY	1 cut(s)	1055
BstHHI	GCGC	3 cut(s)	123, 677, 1054
BstKTI	GATC	3 cut(s)	547, 582, 769
BstMAI	GTCTC	2 cut(s)	755, 978
BstMBI	GATC	3 cut(s)	544, 579, 766
BstMWI	GCNNNNNNNGC	9 cut(s)	46, 52, 73, 549, 629, 683, 887, 941, 1016
BstNI	CCWGG	1 cut(s)	178
BstPI	GGTNACC	1 cut(s)	298
BstSCI	CCNGG	1 cut(s)	176
BstSFI	CTRYAG	2 cut(s)	789, 1017
BstSLI	GKGCMC	2 cut(s)	42, 1112
BstV1I	GCAGC	7 cut(s)	644, 775, 916, 919, 1003, 1031, 1181
BstV2I	GAAGAC	1 cut(s)	174
Bsu15I	ATCGAT	1 cut(s)	415
BsuRI	GGCC	2 cut(s)	261, 1130
BsuTUI	ATCGAT	1 cut(s)	415
BtsCI	GGATG	2 cut(s)	92, 331
BtsIMutI	CAGTG	1 cut(s)	1178
BveI	ACCTGC	1 cut(s)	487
Cac8I	GCNNGC	5 cut(s)	888, 937, 949, 1056, 1083
CfoI	GCGC	3 cut(s)	123, 677, 1054
Cfr13I	GGNCC	1 cut(s)	666
ClaI	ATCGAT	1 cut(s)	415
CsiI	ACCWGGT	1 cut(s)	176
Csp6I	GTAC	2 cut(s)	274, 1138
CviAII	CATG	3 cut(s)	317, 385, 442
CviQI	GTAC	2 cut(s)	274, 1138
DdeI	CTNAG	2 cut(s)	548, 589
DpnI	GATC	3 cut(s)	546, 581, 768
DpnII	GATC	3 cut(s)	544, 579, 766
Eam1104I	CTCTTC	1 cut(s)	1030
EarI	CTCTTC	1 cut(s)	1030
Eco130I	CCWWGG	2 cut(s)	538, 1033
Eco47I	GGWCC	1 cut(s)	666
Eco47III	AGCGCT	1 cut(s)	1053
Eco57I	CTGAAG	1 cut(s)	549
Eco91I	GGTNACC	1 cut(s)	298
EcoNI	CCTNNNNNAGG	1 cut(s)	356
EcoO109I	RGGNCCY	1 cut(s)	666
EcoO65I	GGTNACC	1 cut(s)	298
EcoRI	GAATTC	1 cut(s)	640
EcoRII	CCWGG	1 cut(s)	176
EcoT14I	CCWWGG	2 cut(s)	538, 1033
ErhI	CCWWGG	2 cut(s)	538, 1033
FaeI	CATG	3 cut(s)	320, 388, 445
FaiI	YATR	9 cut(s)	11, 88, 318, 386, 411, 443, 698, 729, 854
FalI	AAGNNNNNCTT	2 cut(s)	596, 628
FaqI	GGGAC	1 cut(s)	679
FatI	CATG	3 cut(s)	316, 384, 441
FokI	GGATG	2 cut(s)	79, 338
FspBI	CTAG	8 cut(s)	596, 636, 887, 926, 936, 948, 962, 1055
GlaI	GCGC	3 cut(s)	122, 676, 1053
GsuI	CTGGAG	1 cut(s)	633
HaeII	RGCGCY	1 cut(s)	1055
HaeIII	GGCC	2 cut(s)	261, 1130
HhaI	GCGC	3 cut(s)	123, 677, 1054
Hin1I	GRCGYC	1 cut(s)	229
Hin1II	CATG	3 cut(s)	320, 388, 445
Hin6I	GCGC	3 cut(s)	121, 675, 1052
HinP1I	GCGC	3 cut(s)	121, 675, 1052
HindIII	AAGCTT	1 cut(s)	143
HinfI	GANTC	2 cut(s)	417, 1038
HphI	GGTGA	2 cut(s)	310, 1020
Hpy166II	GTNNAC	2 cut(s)	40, 808
Hpy188I	TCNGA	9 cut(s)	22, 214, 247, 475, 592, 752, 898, 1123, 1145
Hpy188III	TCNNGA	4 cut(s)	186, 254, 906, 918
Hpy8I	GTNNAC	2 cut(s)	40, 808
Hpy99I	CGWCG	1 cut(s)	1145
HpyAV	CCTTC	6 cut(s)	60, 427, 619, 964, 968, 1120
HpyCH4III	ACNGT	3 cut(s)	273, 349, 1067
HpyCH4IV	ACGT	3 cut(s)	229, 333, 1140
HpyCH4V	TGCA	9 cut(s)	40, 356, 400, 461, 503, 791, 1019, 1073, 1169
HpyF10VI	GCNNNNNNNGC	9 cut(s)	46, 52, 73, 549, 629, 683, 887, 941, 1016
HpyF3I	CTNAG	2 cut(s)	548, 589
HpySE526I	ACGT	3 cut(s)	229, 333, 1140
Hsp92I	GRCGYC	1 cut(s)	229
Hsp92II	CATG	3 cut(s)	320, 388, 445
HspAI	GCGC	3 cut(s)	121, 675, 1052
Kzo9I	GATC	3 cut(s)	544, 579, 766
LmnI	GCTCC	2 cut(s)	652, 1049
Lsp1109I	GCAGC	7 cut(s)	644, 775, 916, 919, 1003, 1031, 1181
LweI	GCATC	2 cut(s)	387, 823
MabI	ACCWGGT	1 cut(s)	176
MaeI	CTAG	8 cut(s)	596, 636, 887, 926, 936, 948, 962, 1055
MaeII	ACGT	3 cut(s)	229, 333, 1140
MaeIII	GTNAC	6 cut(s)	98, 267, 298, 380, 1061, 1174
MalI	GATC	3 cut(s)	546, 581, 768
MboI	GATC	3 cut(s)	544, 579, 766
MboII	GAAGA	4 cut(s)	139, 174, 875, 1017
MhlI	GDGCHC	2 cut(s)	42, 1112
MluCI	AATT	4 cut(s)	116, 311, 519, 640
MlyI	GAGTC	1 cut(s)	1047
MmeI	TCCRAC	1 cut(s)	1123
MnlI	CCTC	8 cut(s)	208, 220, 526, 850, 867, 871, 1033, 1139
MroXI	GAANNNNTTC	2 cut(s)	312, 913
MseI	TTAA	2 cut(s)	279, 1198
MslI	CAYNNNNRTG	1 cut(s)	85
MspA1I	CMGCKG	1 cut(s)	1172
MspR9I	CCNGG	1 cut(s)	178
Mva1269I	GAATGC	1 cut(s)	202
MvaI	CCWGG	1 cut(s)	178
MwoI	GCNNNNNNNGC	9 cut(s)	46, 52, 73, 549, 629, 683, 887, 941, 1016
NdeII	GATC	3 cut(s)	544, 579, 766
NheI	GCTAGC	4 cut(s)	886, 935, 947, 1054
NlaIII	CATG	3 cut(s)	320, 388, 445
NlaIV	GGNNCC	2 cut(s)	536, 667
NmuCI	GTSAC	3 cut(s)	298, 380, 1061
PcsI	WCGNNNNNNNCGW	1 cut(s)	1146
PctI	GAATGC	1 cut(s)	202
PdmI	GAANNNNTTC	2 cut(s)	312, 913
PfeI	GAWTC	1 cut(s)	417
Pfl23II	CGTACG	1 cut(s)	1137
PleI	GAGTC	1 cut(s)	1046
PpsI	GAGTC	1 cut(s)	1046
Ppu21I	YACGTR	1 cut(s)	334
PpuMI	RGGWCCY	1 cut(s)	666
PsiI	TTATAA	1 cut(s)	411
Psp5II	RGGWCCY	1 cut(s)	666
Psp6I	CCWGG	1 cut(s)	176
PspEI	GGTNACC	1 cut(s)	298
PspGI	CCWGG	1 cut(s)	176
PspLI	CGTACG	1 cut(s)	1137
PspN4I	GGNNCC	2 cut(s)	536, 667
PspPI	GGNCC	1 cut(s)	666
PspPPI	RGGWCCY	1 cut(s)	666
PstI	CTGCAG	2 cut(s)	793, 1021
PvuII	CAGCTG	1 cut(s)	1172
RsaI	GTAC	2 cut(s)	275, 1139
RsaNI	GTAC	2 cut(s)	274, 1138
RseI	CAYNNNNRTG	1 cut(s)	85
SaqAI	TTAA	2 cut(s)	279, 1198
Sau3AI	GATC	3 cut(s)	544, 579, 766
Sau96I	GGNCC	1 cut(s)	666
SchI	GAGTC	1 cut(s)	1047
ScrFI	CCNGG	1 cut(s)	178
SduI	GDGCHC	2 cut(s)	42, 1112
SexAI	ACCWGGT	1 cut(s)	176
SfaNI	GCATC	2 cut(s)	387, 823
SfcI	CTRYAG	2 cut(s)	789, 1017
SinI	GGWCC	1 cut(s)	666
SmiMI	CAYNNNNRTG	1 cut(s)	85
SmlI	CTYRAG	2 cut(s)	263, 841
SmoI	CTYRAG	2 cut(s)	263, 841
Sse9I	AATT	4 cut(s)	116, 311, 519, 640
SsiI	CCGC	9 cut(s)	4, 47, 77, 200, 374, 620, 683, 942, 945
SspMI	CTAG	8 cut(s)	596, 636, 887, 926, 936, 948, 962, 1055
StyD4I	CCNGG	1 cut(s)	176
StyI	CCWWGG	2 cut(s)	538, 1033
TaaI	ACNGT	3 cut(s)	273, 349, 1067
TaiI	ACGT	3 cut(s)	232, 336, 1143
TaqI	TCGA	3 cut(s)	125, 415, 732
TasI	AATT	4 cut(s)	116, 311, 519, 640
TauI	GCSGC	6 cut(s)	49, 79, 203, 623, 686, 947
TfiI	GAWTC	1 cut(s)	417
Tru1I	TTAA	2 cut(s)	279, 1198
Tru9I	TTAA	2 cut(s)	279, 1198
TscAI	CASTG	1 cut(s)	1185
TseFI	GTSAC	3 cut(s)	298, 380, 1061
TseI	GCWGC	7 cut(s)	632, 788, 929, 932, 1016, 1019, 1169
Tsp45I	GTSAC	3 cut(s)	298, 380, 1061
TspDTI	ATGAA	5 cut(s)	81, 305, 750, 869, 882
TspRI	CASTG	1 cut(s)	1185
VneI	GTGCAC	1 cut(s)	38
VpaK11BI	GGWCC	1 cut(s)	666
XagI	CCTNNNNNAGG	1 cut(s)	356
XapI	RAATTY	1 cut(s)	640
XmnI	GAANNNNTTC	2 cut(s)	312, 913
XspI	CTAG	8 cut(s)	596, 636, 887, 926, 936, 948, 962, 1055
ZraI	GACGTC	1 cut(s)	230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.