Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0008777

Physical Location & Seq

Genomic Coordinates Reverse (-)

11525377 .. 11532180

Gene Structure 6804 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G110800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGCGAAGCATAACGCTCTCAGAGAGCGTTCTAGGGGCGCATTCACTGCCTTCACCATTTCCTAAACCTCTCAAGCCATCATCTTCCTCATGTTACTTGCTTCCTTTCAAATTACGGTCCAAGAAGCTCACTTCGAAGCTTTCTCTTCCAAACCCAAGTTTTGTTTCCTCGAGGTATTCATGTAAGTGGAATGCAAACACCTGTGAGGAATGGTTTCGACGTCTTCTACAAACTTCTGGAAATTTAGATGACCTGGAGCTACACTACCTTAATTACGAGAAATGCAGGGTGACCACAGACCCAATTGACATTGAGGATGATTTTGTTGCTTTAGATAAAGCACTACCAAAGAAGAACTTAAAAAAGAATTGTCACATGGATGGAGAGACCATGGCTCATAATTCATTCTCTCATTTTTGGAAGGCTATTCTGCTGTTTGGATTTCTTGCACTTCAAGGCTCTGAACCGGCTTTTGCTATATCTGATCTTGCTAGTGGCTTACCATCAATTCCTTTTCTGGGGGACCTTGGTGATCTTAGCACAGGTTTTGCTTCAGCATTCTTGCTGATCTTTTTCTCAGAACTAGGGGACAAGACCTTCTTTATTGCGGCACTTTTAGCAGCTAGGAATTCTGCTCCTGTTGTTTTTATTGGGACCTTTGGTGCACTTGCGGCAATGACCATCATATCTGTTGTTCTTGGACGAACTTTTCACTACGTCGATGAAATCCTACCATTCAGGTTTGGTGAGACTGATCTACCCATTGATGATATTGCTGCAGTTCTCCTTTTGGTTTATTTTGGAGTTTCAACTTTGCTTGATGCCACCTCAAGTGACAGTTTGAAAGCAGAAGATGAACAAAGGGAGGCAGAGCTAGCTGTTTCCAAATTTTCAGGAAATGGTGCTGGAATATTAGCTGCTGCTAGCACTGTCATTAGCACCTTCCTCTTAGTTTTTGTTGCTGAATGGGGAGACAAATCATTTTTCTCTACAATAGCACTTGCTGCAGCCTCTTCACCCCTTGGAGTCATCGGAGGAGCACTAGCTGGTCATGGTGTTGCAACTTTGCTTGCTGTTTTAGGAGGTTCCTTACTGGGCACATTCTTATCAGAGAAGGCCATTGCCTACATCGGAGGTGTTCTTTTTCTCGTCTTTGCTGCCGTAACATTGGTTGAGATAGTAACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005384 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006828 GO:0008150 GO:0008152 GO:0008324 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0010207 GO:0010270 GO:0015075 GO:0015095 GO:0015318 GO:0015693 GO:0015979 GO:0016020 GO:0016043 GO:0019684 GO:0022607 GO:0022857 GO:0022890 GO:0030001 GO:0031976 GO:0031984 GO:0034220 GO:0034357 GO:0034622 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0046915 GO:0051179 GO:0051234 GO:0055035 GO:0055085 GO:0065003 GO:0070838 GO:0071421 GO:0071840 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1903830

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UPF0016

Protein Analysis

396

Amino Acids

42.29

Weight (kDa)

5.31

Isoelectric Point (pI)

38.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008777)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64150
fragaria_vesca	FvH4_5g03670 FvH4_5g03670 FvH4_5g03670 FvH4_5g03670 FvH4_5g03670
malus_domestica	MD06G1096200.v1.1
prunus_persica	Prupe.5G110800_v2.0.a1 Prupe.5G110800_v2.0.a1
pyrus_communis	pycom06g09250
rosa_chinensis	RchiOBHm_Chr7g0196061
rosa_laevigata	RLG00000004069
rosa_multiflora	Rmu_sc0001640.1_g000008
rosa_roxburghii	Rroxscaffold_3G00259890
rosa_rugosa	Rorug07G0029500 Rorug07G0029600 Rorug07G0029700 Rorug07G0029700
rosa_samantha	Rh7AG156100 Rh7BG157800 Rh7CG161500 Rh7DG157000
rosa_wichuraiana	Rw7G013340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	223
AbsI	CCTCGAGG	1 cut(s)	169
AciI	CCGC	2 cut(s)	608, 671
AcsI	RAATTY	3 cut(s)	241, 628, 887
AcuI	CTGAAG	1 cut(s)	537
AcyI	GRCGYC	1 cut(s)	220
AfiI	CCNNNNNNNGG	1 cut(s)	518
AgsI	TTSAA	4 cut(s)	109, 455, 810, 844
AjnI	CCWGG	1 cut(s)	252
AjuI	GAANNNNNNNTTGG	2 cut(s)	148, 180
AluBI	AGCT	8 cut(s)	127, 139, 259, 623, 874, 878, 917, 1046
AluI	AGCT	8 cut(s)	127, 139, 259, 623, 874, 878, 917, 1046
Alw21I	GWGCWC	2 cut(s)	667, 1042
Alw26I	GTCTC	3 cut(s)	380, 743, 966
Alw44I	GTGCAC	1 cut(s)	663
Ama87I	CYCGRG	1 cut(s)	169
AoxI	GGCC	1 cut(s)	1116
ApaLI	GTGCAC	1 cut(s)	663
ApeKI	GCWGC	7 cut(s)	620, 776, 917, 920, 1004, 1007, 1157
ApoI	RAATTY	3 cut(s)	241, 628, 887
Asp700I	GAANNNNTTC	1 cut(s)	213
AspLEI	GCGC	1 cut(s)	40
AspS9I	GGNCC	3 cut(s)	117, 523, 654
AsuHPI	GGTGA	5 cut(s)	45, 301, 542, 758, 1008
AsuII	TTCGAA	1 cut(s)	134
AsuNHI	GCTAGC	2 cut(s)	874, 923
AvaI	CYCGRG	1 cut(s)	169
AvaII	GGWCC	3 cut(s)	117, 523, 654
BaeGI	GKGCMC	2 cut(s)	667, 1100
BbsI	GAAGAC	1 cut(s)	215
Bbv12I	GWGCWC	2 cut(s)	667, 1042
BbvI	GCAGC	7 cut(s)	632, 763, 904, 907, 991, 1019, 1144
BccI	CCATC	4 cut(s)	85, 374, 511, 689
BceAI	ACGGC	1 cut(s)	1145
BciT130I	CCWGG	1 cut(s)	254
BcoDI	GTCTC	3 cut(s)	380, 743, 966
BfaI	CTAG	7 cut(s)	32, 492, 584, 624, 875, 924, 1043
BfmI	CTRYAG	2 cut(s)	777, 1005
BisI	GCNGC	9 cut(s)	609, 621, 672, 777, 918, 921, 1005, 1008, 1158
BlsI	GCNGC	9 cut(s)	610, 622, 673, 778, 919, 922, 1006, 1009, 1159
Bme1390I	CCNGG	1 cut(s)	254
Bme18I	GGWCC	3 cut(s)	117, 523, 654
BmeT110I	CYCGRG	1 cut(s)	169
BmgT120I	GGNCC	3 cut(s)	117, 523, 654
BmiI	GGNNCC	3 cut(s)	524, 655, 1087
BmrFI	CCNGG	1 cut(s)	254
BmrI	ACTGGG	1 cut(s)	1103
BmsI	GCATC	1 cut(s)	811
BmtI	GCTAGC	2 cut(s)	878, 927
BmuI	ACTGGG	1 cut(s)	1103
BpiI	GAAGAC	1 cut(s)	215
BpmI	CTGGAG	1 cut(s)	275
Bpu14I	TTCGAA	1 cut(s)	134
BpuEI	CTTGAG	2 cut(s)	56, 814
BsaHI	GRCGYC	1 cut(s)	220
BsaI	GGTCTC	1 cut(s)	380
BsaJI	CCNNGG	3 cut(s)	390, 526, 1021
Bsc4I	CCNNNNNNNGG	1 cut(s)	518
Bse118I	RCCGGY	1 cut(s)	466
Bse1I	ACTGG	1 cut(s)	1098
Bse3DI	GCAATG	2 cut(s)	681, 1119
BseBI	CCWGG	1 cut(s)	254
BseDI	CCNNGG	3 cut(s)	390, 526, 1021
BseGI	GGATG	2 cut(s)	322, 385
BseLI	CCNNNNNNNGG	1 cut(s)	518
BseMI	GCAATG	2 cut(s)	681, 1119
BseMII	CTCAG	2 cut(s)	33, 591
BseNI	ACTGG	1 cut(s)	1098
BseRI	GAGGAG	1 cut(s)	1050
BseSI	GKGCMC	2 cut(s)	667, 1100
BseXI	GCAGC	7 cut(s)	632, 763, 904, 907, 991, 1019, 1144
BshFI	GGCC	1 cut(s)	1118
BsiHKAI	GWGCWC	2 cut(s)	667, 1042
BsiHKCI	CYCGRG	1 cut(s)	169
BsiSI	CCGG	1 cut(s)	467
BslFI	GGGAC	3 cut(s)	536, 602, 667
BslI	CCNNNNNNNGG	1 cut(s)	518
BsmAI	GTCTC	3 cut(s)	380, 743, 966
BsmFI	GGGAC	3 cut(s)	536, 602, 667
BsmI	GAATGC	3 cut(s)	40, 196, 557
BsnI	GGCC	1 cut(s)	1118
Bso31I	GGTCTC	1 cut(s)	380
BsoBI	CYCGRG	1 cut(s)	169
Bsp119I	TTCGAA	1 cut(s)	134
Bsp1286I	GDGCHC	3 cut(s)	667, 1042, 1100
Bsp143I	GATC	4 cut(s)	484, 532, 567, 754
Bsp19I	CCATGG	1 cut(s)	390
BspACI	CCGC	2 cut(s)	608, 671
BspANI	GGCC	1 cut(s)	1118
BspCNI	CTCAG	2 cut(s)	32, 590
BspLI	GGNNCC	3 cut(s)	524, 655, 1087
BspMAI	CTGCAG	2 cut(s)	781, 1009
BspOI	GCTAGC	2 cut(s)	878, 927
BspT104I	TTCGAA	1 cut(s)	134
BspTNI	GGTCTC	1 cut(s)	380
BsrDI	GCAATG	2 cut(s)	681, 1119
BsrFI	RCCGGY	1 cut(s)	466
BsrI	ACTGG	1 cut(s)	1098
BssAI	RCCGGY	1 cut(s)	466
BssECI	CCNNGG	3 cut(s)	390, 526, 1021
BssMI	GATC	4 cut(s)	484, 532, 567, 754
BssNI	GRCGYC	1 cut(s)	220
BssT1I	CCWWGG	3 cut(s)	390, 526, 1021
Bst2UI	CCWGG	1 cut(s)	254
Bst4CI	ACNGT	3 cut(s)	117, 839, 931
Bst6I	CTCTTC	2 cut(s)	150, 1018
BstACI	GRCGYC	1 cut(s)	220
BstAPI	GCANNNNNTGC	2 cut(s)	46, 1004
BstBI	TTCGAA	1 cut(s)	134
BstC8I	GCNNGC	3 cut(s)	876, 925, 1071
BstDEI	CTNAG	4 cut(s)	19, 536, 577, 949
BstDSI	CCRYGG	1 cut(s)	390
BstEII	GGTNACC	1 cut(s)	289
BstF5I	GGATG	2 cut(s)	322, 385
BstHHI	GCGC	1 cut(s)	40
BstKTI	GATC	4 cut(s)	487, 535, 570, 757
BstMAI	GTCTC	3 cut(s)	380, 743, 966
BstMBI	GATC	4 cut(s)	484, 532, 567, 754
BstMWI	GCNNNNNNNGC	5 cut(s)	46, 617, 671, 875, 1004
BstNI	CCWGG	1 cut(s)	254
BstPI	GGTNACC	1 cut(s)	289
BstSCI	CCNGG	1 cut(s)	252
BstSFI	CTRYAG	2 cut(s)	777, 1005
BstSLI	GKGCMC	2 cut(s)	667, 1100
BstV1I	GCAGC	7 cut(s)	632, 763, 904, 907, 991, 1019, 1144
BstV2I	GAAGAC	1 cut(s)	215
BsuRI	GGCC	1 cut(s)	1118
BtgI	CCRYGG	1 cut(s)	390
BtsCI	GGATG	2 cut(s)	322, 385
BtsI	GCAGTG	1 cut(s)	44
BtsIMutI	CAGTG	2 cut(s)	44, 927
Cac8I	GCNNGC	3 cut(s)	876, 925, 1071
CfoI	GCGC	1 cut(s)	40
Cfr10I	RCCGGY	1 cut(s)	466
Cfr13I	GGNCC	3 cut(s)	117, 523, 654
CviAII	CATG	5 cut(s)	90, 180, 376, 391, 1052
DdeI	CTNAG	4 cut(s)	19, 536, 577, 949
DpnI	GATC	4 cut(s)	486, 534, 569, 756
DpnII	GATC	4 cut(s)	484, 532, 567, 754
Eam1104I	CTCTTC	2 cut(s)	150, 1018
EarI	CTCTTC	2 cut(s)	150, 1018
Eco130I	CCWWGG	3 cut(s)	390, 526, 1021
Eco31I	GGTCTC	1 cut(s)	380
Eco47I	GGWCC	3 cut(s)	117, 523, 654
Eco57I	CTGAAG	1 cut(s)	537
Eco88I	CYCGRG	1 cut(s)	169
Eco91I	GGTNACC	1 cut(s)	289
EcoO109I	RGGNCCY	2 cut(s)	523, 654
EcoO65I	GGTNACC	1 cut(s)	289
EcoRI	GAATTC	1 cut(s)	628
EcoRII	CCWGG	1 cut(s)	252
EcoT14I	CCWWGG	3 cut(s)	390, 526, 1021
ErhI	CCWWGG	3 cut(s)	390, 526, 1021
FaeI	CATG	5 cut(s)	93, 183, 379, 394, 1055
FaiI	YATR	9 cut(s)	11, 91, 181, 377, 392, 399, 479, 686, 1053
FalI	AAGNNNNNCTT	4 cut(s)	341, 373, 584, 616
FaqI	GGGAC	3 cut(s)	536, 602, 667
FatI	CATG	5 cut(s)	89, 179, 375, 390, 1051
Fnu4HI	GCNGC	9 cut(s)	609, 621, 672, 777, 918, 921, 1005, 1008, 1158
FokI	GGATG	2 cut(s)	329, 392
Fsp4HI	GCNGC	9 cut(s)	609, 621, 672, 777, 918, 921, 1005, 1008, 1158
FspBI	CTAG	7 cut(s)	32, 492, 584, 624, 875, 924, 1043
GlaI	GCGC	1 cut(s)	39
GluI	GCNGC	9 cut(s)	609, 621, 672, 777, 918, 921, 1005, 1008, 1158
GsuI	CTGGAG	1 cut(s)	275
HaeIII	GGCC	1 cut(s)	1118
HapII	CCGG	1 cut(s)	467
HhaI	GCGC	1 cut(s)	40
Hin1I	GRCGYC	1 cut(s)	220
Hin1II	CATG	5 cut(s)	93, 183, 379, 394, 1055
Hin6I	GCGC	1 cut(s)	38
HinP1I	GCGC	1 cut(s)	38
HindIII	AAGCTT	1 cut(s)	137
HinfI	GANTC	1 cut(s)	1026
HpaII	CCGG	1 cut(s)	467
HphI	GGTGA	5 cut(s)	45, 301, 542, 758, 1008
Hpy166II	GTNNAC	1 cut(s)	665
Hpy188I	TCNGA	7 cut(s)	22, 463, 484, 580, 1034, 1111, 1133
Hpy188III	TCNNGA	2 cut(s)	237, 894
Hpy8I	GTNNAC	1 cut(s)	665
Hpy99I	CGWCG	2 cut(s)	222, 722
HpyAV	CCTTC	5 cut(s)	60, 415, 607, 952, 1108
HpyCH4III	ACNGT	3 cut(s)	117, 839, 931
HpyCH4IV	ACGT	2 cut(s)	220, 717
HpyCH4V	TGCA	7 cut(s)	194, 285, 449, 665, 779, 1007, 1061
HpyF10VI	GCNNNNNNNGC	5 cut(s)	46, 617, 671, 875, 1004
HpyF3I	CTNAG	4 cut(s)	19, 536, 577, 949
HpySE526I	ACGT	2 cut(s)	220, 717
Hsp92I	GRCGYC	1 cut(s)	220
Hsp92II	CATG	5 cut(s)	93, 183, 379, 394, 1055
HspAI	GCGC	1 cut(s)	38
Kzo9I	GATC	4 cut(s)	484, 532, 567, 754
LmnI	GCTCC	3 cut(s)	256, 640, 1037
Lsp1109I	GCAGC	7 cut(s)	632, 763, 904, 907, 991, 1019, 1144
LweI	GCATC	1 cut(s)	811
MaeI	CTAG	7 cut(s)	32, 492, 584, 624, 875, 924, 1043
MaeII	ACGT	2 cut(s)	220, 717
MaeIII	GTNAC	6 cut(s)	92, 289, 371, 833, 1162, 1180
MalI	GATC	4 cut(s)	486, 534, 569, 756
MboI	GATC	4 cut(s)	484, 532, 567, 754
MboII	GAAGA	6 cut(s)	75, 137, 215, 364, 863, 1005
MfeI	CAATTG	1 cut(s)	303
MhlI	GDGCHC	3 cut(s)	667, 1042, 1100
MluCI	AATT	9 cut(s)	110, 241, 271, 303, 367, 400, 507, 628, 887
MlyI	GAGTC	1 cut(s)	1035
MroXI	GAANNNNTTC	1 cut(s)	213
MseI	TTAA	3 cut(s)	270, 359, 1186
MslI	CAYNNNNRTG	2 cut(s)	184, 378
MspI	CCGG	1 cut(s)	467
MspR9I	CCNGG	1 cut(s)	254
MunI	CAATTG	1 cut(s)	303
Mva1269I	GAATGC	3 cut(s)	40, 196, 557
MvaI	CCWGG	1 cut(s)	254
MwoI	GCNNNNNNNGC	5 cut(s)	46, 617, 671, 875, 1004
NcoI	CCATGG	1 cut(s)	390
NdeII	GATC	4 cut(s)	484, 532, 567, 754
NheI	GCTAGC	2 cut(s)	874, 923
NlaIII	CATG	5 cut(s)	93, 183, 379, 394, 1055
NlaIV	GGNNCC	3 cut(s)	524, 655, 1087
NmuCI	GTSAC	3 cut(s)	289, 371, 833
NspV	TTCGAA	1 cut(s)	134
PaeR7I	CTCGAG	1 cut(s)	169
PctI	GAATGC	3 cut(s)	40, 196, 557
PdmI	GAANNNNTTC	1 cut(s)	213
PkrI	GCNGC	9 cut(s)	610, 622, 673, 778, 919, 922, 1006, 1009, 1159
PleI	GAGTC	1 cut(s)	1034
PpsI	GAGTC	1 cut(s)	1034
PpuMI	RGGWCCY	2 cut(s)	523, 654
Psp5II	RGGWCCY	2 cut(s)	523, 654
Psp6I	CCWGG	1 cut(s)	252
PspEI	GGTNACC	1 cut(s)	289
PspGI	CCWGG	1 cut(s)	252
PspN4I	GGNNCC	3 cut(s)	524, 655, 1087
PspPI	GGNCC	3 cut(s)	117, 523, 654
PspPPI	RGGWCCY	2 cut(s)	523, 654
PspXI	VCTCGAGB	1 cut(s)	169
PstI	CTGCAG	2 cut(s)	781, 1009
RseI	CAYNNNNRTG	2 cut(s)	184, 378
SaqAI	TTAA	3 cut(s)	270, 359, 1186
SatI	GCNGC	9 cut(s)	609, 621, 672, 777, 918, 921, 1005, 1008, 1158
Sau3AI	GATC	4 cut(s)	484, 532, 567, 754
Sau96I	GGNCC	3 cut(s)	117, 523, 654
SchI	GAGTC	1 cut(s)	1035
ScrFI	CCNGG	1 cut(s)	254
SduI	GDGCHC	3 cut(s)	667, 1042, 1100
SfaNI	GCATC	1 cut(s)	811
SfcI	CTRYAG	2 cut(s)	777, 1005
Sfr274I	CTCGAG	1 cut(s)	169
SfuI	TTCGAA	1 cut(s)	134
SinI	GGWCC	3 cut(s)	117, 523, 654
SlaI	CTCGAG	1 cut(s)	169
SmiMI	CAYNNNNRTG	2 cut(s)	184, 378
SmlI	CTYRAG	3 cut(s)	71, 169, 829
SmoI	CTYRAG	3 cut(s)	71, 169, 829
Sse9I	AATT	9 cut(s)	110, 241, 271, 303, 367, 400, 507, 628, 887
SsiI	CCGC	2 cut(s)	608, 671
SspI	AATATT	1 cut(s)	912
SspMI	CTAG	7 cut(s)	32, 492, 584, 624, 875, 924, 1043
StyD4I	CCNGG	1 cut(s)	252
StyI	CCWWGG	3 cut(s)	390, 526, 1021
TaaI	ACNGT	3 cut(s)	117, 839, 931
TaiI	ACGT	2 cut(s)	223, 720
TaqI	TCGA	4 cut(s)	134, 170, 217, 720
TasI	AATT	9 cut(s)	110, 241, 271, 303, 367, 400, 507, 628, 887
TauI	GCSGC	2 cut(s)	611, 674
Tru1I	TTAA	3 cut(s)	270, 359, 1186
Tru9I	TTAA	3 cut(s)	270, 359, 1186
TscAI	CASTG	2 cut(s)	51, 934
TseFI	GTSAC	3 cut(s)	289, 371, 833
TseI	GCWGC	7 cut(s)	620, 776, 917, 920, 1004, 1007, 1157
Tsp45I	GTSAC	3 cut(s)	289, 371, 833
TspDTI	ATGAA	4 cut(s)	168, 393, 738, 870
TspRI	CASTG	2 cut(s)	51, 934
VneI	GTGCAC	1 cut(s)	663
VpaK11BI	GGWCC	3 cut(s)	117, 523, 654
XapI	RAATTY	3 cut(s)	241, 628, 887
XhoI	CTCGAG	1 cut(s)	169
XmnI	GAANNNNTTC	1 cut(s)	213
XspI	CTAG	7 cut(s)	32, 492, 584, 624, 875, 924, 1043
ZraI	GACGTC	1 cut(s)	221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.